Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30838 * 125.82920 * 2 1 4 4 N 1.40083 * 108.33473 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.06414 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47151 * 90.02166 * 5 4 3 7 7 H 1.07997 * 120.00262 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99675 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99746 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00118 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47344 * 89.99924 * 10 8 6 12 12 H 1.48495 * 109.47066 * 210.00021 * 10 8 6 13 13 H 1.48506 * 109.46933 * 329.99534 * 10 8 6 14 14 C 1.35797 * 107.86597 * 359.73355 * 4 3 2 15 15 C 1.50695 * 126.21073 * 180.28382 * 14 4 3 16 16 C 1.35642 * 107.58130 * 0.42423 * 14 4 3 17 17 O 1.36189 * 126.06177 * 179.83463 * 16 14 4 18 18 C 1.34839 * 117.00132 * 269.71857 * 17 16 14 19 19 O 1.21647 * 120.00383 * 0.02562 * 18 17 16 20 20 C 1.46500 * 119.99881 * 180.02562 * 18 17 16 21 21 C 1.40412 * 126.57406 * 359.97402 * 20 18 17 22 22 N 1.30971 * 108.77061 * 179.97438 * 21 20 18 23 23 N 1.39906 * 109.58521 * 0.02562 * 22 21 20 24 24 N 1.40025 * 132.50265 * 180.02562 * 23 22 21 25 25 C 1.30847 * 120.65358 * 179.97438 * 24 23 22 26 26 C 1.39724 * 120.97008 * 0.27894 * 25 24 23 27 27 C 1.36566 * 119.93666 * 359.43657 * 26 25 24 28 28 C 1.36735 * 107.88601 * 0.02562 * 23 22 21 29 29 H 1.08998 * 109.46960 * 270.00018 * 1 2 3 30 30 H 1.09000 * 109.47145 * 30.00228 * 1 2 3 31 31 H 1.08998 * 109.47087 * 150.00063 * 1 2 3 32 32 H 1.08999 * 109.46563 * 210.01858 * 5 4 3 33 33 H 1.08995 * 109.47054 * 330.01482 * 5 4 3 34 34 H 0.96994 * 119.99632 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47107 * 270.19608 * 15 14 4 36 36 H 1.09001 * 109.47482 * 30.19423 * 15 14 4 37 37 H 1.09001 * 109.47320 * 150.19251 * 15 14 4 38 38 H 1.07993 * 125.61626 * 0.02562 * 21 20 18 39 39 H 1.08002 * 119.50944 * 179.97438 * 25 24 23 40 40 H 1.08003 * 120.02889 * 179.72160 * 26 25 24 41 41 H 1.08007 * 120.44883 * 180.29448 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2729 1.0608 0.0000 4 7 3.6090 0.6397 -0.0006 5 6 4.7875 1.5099 -0.0013 6 6 5.1927 1.8081 1.4193 7 1 4.6285 1.3915 2.2405 8 6 6.2837 2.6129 1.6704 9 7 6.6370 2.8735 2.9101 10 14 7.2592 3.3341 0.2499 11 1 6.6864 4.6517 -0.1253 12 1 8.6755 3.5088 0.6604 13 1 7.1910 2.4149 -0.9145 14 6 3.6178 -0.7182 0.0051 15 6 4.8394 -1.6006 0.0126 16 6 2.3274 -1.1364 -0.0005 17 8 1.9042 -2.4308 -0.0007 18 6 1.7140 -3.0125 -1.2022 19 8 1.9204 -2.3829 -2.2224 20 6 1.2588 -4.4029 -1.2791 21 6 0.9806 -5.2532 -0.1969 22 7 0.5990 -6.4165 -0.6622 23 7 0.6082 -6.3880 -2.0609 24 7 0.2924 -7.3493 -3.0288 25 6 0.3842 -7.0679 -4.3034 26 6 0.8041 -5.8063 -4.7328 27 6 1.1145 -4.8428 -3.8160 28 6 1.0170 -5.1435 -2.4530 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 5.6080 1.0097 -0.5158 33 1 4.5508 2.4416 -0.5149 34 1 7.4043 3.4399 3.0868 35 1 5.1393 -1.8147 -1.0132 36 1 5.6524 -1.0911 0.5299 37 1 4.6103 -2.5341 0.5266 38 1 1.0663 -4.9909 0.8472 39 1 0.1364 -7.8235 -5.0342 40 1 0.8787 -5.5919 -5.7887 41 1 1.4354 -3.8633 -4.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121264710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = 119.370038 kcal Electronic energy + Delta-G solvation = -28575.709050 eV Core-core repulsion = 24460.432635 eV Total energy + Delta-G solvation = -4115.276415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.10351 -42.60170 -40.90668 -39.01662 -37.73227 -35.85397 -34.40746 -34.36824 -32.72846 -32.35998 -31.11452 -30.84269 -28.15990 -27.87312 -25.92374 -25.56623 -24.20195 -23.67797 -22.31710 -20.92798 -20.77773 -19.54820 -19.26520 -18.69676 -18.20573 -17.90296 -17.36571 -17.09894 -16.80360 -16.44717 -16.24137 -15.80407 -15.22644 -15.05572 -14.83957 -14.61493 -14.48482 -14.24335 -14.15781 -13.90103 -13.68945 -13.68158 -13.56760 -13.33973 -13.18619 -12.90461 -12.72097 -12.59764 -12.45176 -12.03347 -12.01778 -11.83220 -11.61898 -11.59800 -11.31119 -10.92236 -10.90315 -10.05248 -9.47981 -9.35303 -8.42877 -6.54782 -0.93612 -0.16157 0.19229 0.72740 0.75096 1.19365 1.33446 1.35898 1.44699 1.60261 1.79311 2.15544 2.20685 2.24308 2.89049 3.06056 3.21057 3.38358 3.53663 3.59029 3.64975 3.84101 3.98603 4.03543 4.23924 4.30664 4.38832 4.47467 4.52365 4.57340 4.70804 4.74802 4.79059 4.82971 4.87949 4.97480 5.02591 5.11248 5.15276 5.17645 5.35065 5.72576 5.86164 6.06415 6.21753 6.25842 6.48221 6.72276 6.88827 7.08970 8.73507 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.002522 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.420631 B =11098.095987 C =11345.305169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.062 3.938 3 N -0.319 5.319 4 N -0.342 5.342 5 C 0.241 3.759 6 C -0.553 4.553 7 H 0.027 0.973 8 C 0.025 3.975 9 N -0.934 5.934 10 Si 0.948 3.052 11 H -0.265 1.265 12 H -0.272 1.272 13 H -0.236 1.236 14 C 0.095 3.905 15 C -0.091 4.091 16 C -0.097 4.097 17 O -0.243 6.243 18 C 0.534 3.466 19 O -0.531 6.531 20 C -0.288 4.288 21 C 0.132 3.868 22 N -0.289 5.289 23 N -0.184 5.184 24 N -0.249 5.249 25 C 0.135 3.865 26 C -0.105 4.105 27 C -0.072 4.072 28 C 0.118 3.882 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.275 0.725 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.239 0.761 39 H 0.267 0.733 40 H 0.214 0.786 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.679 -21.002 -19.316 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 N -0.143 5.143 4 N -0.123 5.123 5 C 0.122 3.878 6 C -0.591 4.591 7 H 0.046 0.954 8 C -0.176 4.176 9 N -0.572 5.572 10 Si 0.769 3.231 11 H -0.190 1.190 12 H -0.197 1.197 13 H -0.159 1.159 14 C -0.036 4.036 15 C -0.149 4.149 16 C -0.151 4.151 17 O -0.154 6.154 18 C 0.381 3.619 19 O -0.421 6.421 20 C -0.303 4.303 21 C -0.049 4.049 22 N -0.113 5.113 23 N -0.047 5.047 24 N -0.062 5.062 25 C -0.056 4.056 26 C -0.130 4.130 27 C -0.099 4.099 28 C -0.010 4.010 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.255 0.745 39 H 0.282 0.718 40 H 0.231 0.769 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.994 -21.387 -18.470 30.699 hybrid contribution 1.109 1.579 -0.188 1.938 sum -10.885 -19.808 -18.659 29.309 Atomic orbital electron populations 1.20210 0.83991 1.03698 1.04131 1.23038 0.98859 0.89356 0.99227 1.77277 0.87430 1.23359 1.26198 1.48748 1.05541 1.04286 1.53702 1.19861 0.80203 0.90352 0.97425 1.21204 1.14150 1.32863 0.90899 0.95432 1.25794 0.97516 0.95247 0.99007 1.70020 1.27858 1.37760 1.21513 0.85717 0.78050 0.80022 0.79290 1.18973 1.19728 1.15877 1.21647 0.97707 0.85552 0.98727 1.20561 0.92265 0.97919 1.04189 1.17593 0.90289 0.82979 1.24219 1.84744 1.76956 1.22616 1.31126 1.20487 0.73494 0.85960 0.81938 1.90799 1.49716 1.65162 1.36379 1.18631 1.25338 0.93543 0.92763 1.24877 0.90750 0.87686 1.01599 1.77685 1.28677 1.22520 0.82378 1.51200 1.41558 1.06557 1.05427 1.76032 1.18052 1.11886 1.00223 1.25477 0.90086 0.99230 0.90796 1.22435 0.95047 0.91165 1.04309 1.21403 0.97094 1.03457 0.87943 1.20038 0.97484 0.87518 0.96007 0.88813 0.89931 0.90116 0.90964 0.92991 0.91618 0.88737 0.90246 0.88182 0.74495 0.71788 0.76932 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.82 10.44 71.24 0.74 -1.08 16 2 C 0.06 2.48 7.22 43.17 0.31 2.79 16 3 N -0.32 -14.99 12.57 -47.20 -0.59 -15.58 16 4 N -0.34 -16.18 3.62 -337.51 -1.22 -17.40 16 5 C 0.24 11.61 4.91 85.63 0.42 12.03 16 6 C -0.55 -31.71 9.94 25.60 0.25 -31.46 16 7 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 8 C 0.02 1.38 5.47 84.66 0.46 1.85 16 9 N -0.93 -56.56 13.96 21.45 0.30 -56.26 16 10 Si 0.95 40.82 27.47 68.60 1.88 42.70 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 H -0.24 -9.02 6.54 99.48 0.65 -8.37 16 14 C 0.10 3.97 6.97 41.34 0.29 4.26 16 15 C -0.09 -3.06 9.89 71.23 0.70 -2.36 16 16 C -0.10 -3.84 5.36 22.13 0.12 -3.72 16 17 O -0.24 -8.12 9.97 -4.25 -0.04 -8.16 16 18 C 0.53 16.63 7.87 69.97 0.55 17.18 16 19 O -0.53 -18.79 15.55 19.36 0.30 -18.49 16 20 C -0.29 -7.48 6.16 -19.95 -0.12 -7.60 16 21 C 0.13 3.02 11.78 85.35 1.01 4.02 16 22 N -0.29 -7.41 12.61 -56.60 -0.71 -8.12 16 23 N -0.18 -4.30 5.25 -51.27 -0.27 -4.57 16 24 N -0.25 -4.19 11.96 -57.11 -0.68 -4.87 16 25 C 0.13 0.67 11.28 85.20 0.96 1.63 16 26 C -0.10 -0.49 10.04 22.24 0.22 -0.26 16 27 C -0.07 -1.08 9.75 22.29 0.22 -0.86 16 28 C 0.12 2.67 6.83 39.44 0.27 2.94 16 29 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 3.13 6.77 -2.39 -0.02 3.12 16 33 H 0.05 2.46 7.57 -2.39 -0.02 2.44 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.08 2.83 7.78 -2.39 -0.02 2.81 16 37 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.24 3.88 8.06 -2.91 -0.02 3.85 16 39 H 0.27 -1.92 8.06 -2.91 -0.02 -1.94 16 40 H 0.21 -1.13 8.06 -2.91 -0.02 -1.15 16 41 H 0.17 2.65 7.18 -2.91 -0.02 2.63 16 Total: -1.00 -86.81 368.16 6.40 -80.41 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 1.03 Total: 10.99 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 6.41 Total: -0.64 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -3.18 Total: -106.81 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: 0.26 Total: -26.65 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.70 kcal Total: -86.81 6.40 -80.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121264710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.781 kcal (2) G-P(sol) polarization free energy of solvation -86.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds