Wall clock time and date at job start Sat Apr 11 2020 06:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86792 * 120.00507 * 2 1 4 4 H 1.48496 * 109.47217 * 269.99948 * 3 2 1 5 5 H 1.48508 * 109.47079 * 29.99649 * 3 2 1 6 6 H 1.48498 * 109.47467 * 149.99740 * 3 2 1 7 7 C 1.38802 * 119.99438 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00109 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99718 * 180.02562 * 7 2 1 10 10 C 1.81007 * 99.99998 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47197 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99681 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99955 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99820 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46871 * 179.97438 * 14 13 11 16 16 N 1.46901 * 109.46916 * 179.97438 * 15 14 13 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 15 19 19 N 1.30960 * 126.48526 * 90.02620 * 18 17 16 20 20 N 1.29022 * 109.76305 * 179.97438 * 19 18 17 21 21 C 1.29529 * 109.45773 * 359.97243 * 20 19 18 22 22 N 1.34318 * 126.48967 * 269.71602 * 18 17 16 23 23 C 1.46324 * 130.08518 * 0.14800 * 22 18 17 24 24 C 1.53523 * 108.04923 * 163.72067 * 23 22 18 25 25 O 1.43025 * 109.76141 * 48.20798 * 24 23 22 26 26 C 1.43724 * 113.90891 * 289.70068 * 25 24 23 27 27 H 0.97005 * 119.99641 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46946 * 59.99449 * 10 9 7 29 29 H 1.09006 * 109.46691 * 299.99442 * 10 9 7 30 30 H 0.97000 * 120.00338 * 359.97438 * 13 11 10 31 31 H 1.08995 * 109.47316 * 60.00405 * 14 13 11 32 32 H 1.08996 * 109.47008 * 299.99302 * 14 13 11 33 33 H 1.09004 * 109.46889 * 60.00248 * 15 14 13 34 34 H 1.08995 * 109.47384 * 299.99888 * 15 14 13 35 35 H 1.00901 * 111.00067 * 303.95263 * 16 15 14 36 36 H 1.09001 * 109.46798 * 300.00327 * 17 16 15 37 37 H 1.08998 * 109.46961 * 60.00043 * 17 16 15 38 38 H 1.09001 * 109.74872 * 283.36023 * 23 22 18 39 39 H 1.08996 * 109.74818 * 44.03800 * 23 22 18 40 40 H 1.09005 * 109.42096 * 168.29110 * 24 23 22 41 41 H 1.08994 * 109.42524 * 288.17693 * 24 23 22 42 42 H 1.08998 * 110.37369 * 290.05290 * 26 25 24 43 43 H 1.08995 * 109.30772 * 169.11811 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0462 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4701 -2.1373 0.0014 9 16 3.7722 -1.2022 0.0012 10 6 4.0864 -2.9848 0.0025 11 6 5.5728 -3.2329 0.0039 12 8 6.3439 -2.2966 0.0035 13 7 6.0454 -4.4950 0.0045 14 6 7.4904 -4.7361 0.0053 15 6 7.7560 -6.2430 0.0065 16 7 9.2049 -6.4848 0.0067 17 6 9.4984 -7.9242 0.0073 18 6 10.9909 -8.1325 0.0080 19 7 11.7616 -8.2403 1.0614 20 7 12.9855 -8.4116 0.6908 21 6 13.0473 -8.4209 -0.6030 22 7 11.7818 -8.2486 -1.0714 23 6 11.4455 -8.2061 -2.4948 24 6 12.7429 -7.9796 -3.2836 25 8 13.7513 -8.8849 -2.8262 26 6 14.2418 -8.5923 -1.5073 27 1 -0.4850 0.8401 -0.0004 28 1 3.6437 -3.4324 -0.8872 29 1 3.6431 -3.4312 0.8928 30 1 5.4287 -5.2438 0.0045 31 1 7.9329 -4.2889 0.8953 32 1 7.9337 -4.2895 -0.8846 33 1 7.3134 -6.6906 -0.8833 34 1 7.3127 -6.6893 0.8966 35 1 9.6482 -6.0260 -0.7751 36 1 9.0675 -8.3825 0.8974 37 1 9.0676 -8.3832 -0.8826 38 1 10.9925 -9.1512 -2.7946 39 1 10.7506 -7.3881 -2.6848 40 1 12.5569 -8.1502 -4.3441 41 1 13.0830 -6.9547 -3.1355 42 1 14.8324 -7.6762 -1.5167 43 1 14.8538 -9.4237 -1.1577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:40 Heat of formation + Delta-G solvation = 10.572952 kcal Electronic energy + Delta-G solvation = -25648.925257 eV Core-core repulsion = 21664.374998 eV Total energy + Delta-G solvation = -3984.550259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.90301 -39.40026 -39.33753 -37.39435 -35.46296 -34.51712 -32.46488 -32.32516 -31.23752 -30.18719 -28.50964 -26.99662 -25.68903 -25.40620 -24.74645 -22.61704 -21.86707 -20.85847 -20.54742 -18.31012 -17.93528 -17.61461 -16.98141 -16.67249 -16.42470 -16.14907 -16.05986 -15.95358 -15.39258 -15.13010 -15.00057 -14.67908 -14.57746 -14.06536 -13.85271 -13.74159 -13.28895 -13.08014 -12.85959 -12.81535 -12.43850 -12.18356 -12.04494 -11.91885 -11.67145 -11.28980 -11.03086 -11.02865 -10.90568 -10.72179 -10.64017 -9.88578 -9.69584 -9.58612 -9.16545 -9.08530 -9.01320 -8.53147 -6.94833 -6.31336 -4.03394 1.12260 1.67483 2.26671 2.68938 2.78874 2.91600 3.13969 3.31049 3.36710 3.44572 3.48992 3.53381 3.67842 3.90851 4.00300 4.05928 4.21179 4.31087 4.44365 4.47865 4.54401 4.64298 4.68886 4.70784 4.72733 4.82987 5.02502 5.07827 5.10825 5.23391 5.27061 5.52781 5.57404 5.68897 5.73572 5.94946 5.96714 6.12051 6.24072 6.41779 6.59137 7.51440 7.91662 8.19303 8.38946 8.42206 9.14842 10.77837 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.029499 B = 0.001506 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.956395 B =18588.732344 C =18832.321723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.123 3.877 15 C 0.051 3.949 16 N -0.676 5.676 17 C 0.150 3.850 18 C 0.192 3.808 19 N -0.273 5.273 20 N -0.274 5.274 21 C 0.134 3.866 22 N -0.470 5.470 23 C 0.068 3.932 24 C 0.046 3.954 25 O -0.368 6.368 26 C 0.150 3.850 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.400 0.600 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.342 0.658 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.180 -22.430 -8.437 34.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.391 6.391 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.078 4.078 16 N -0.309 5.309 17 C 0.019 3.981 18 C -0.076 4.076 19 N -0.114 5.114 20 N -0.114 5.114 21 C -0.134 4.134 22 N -0.163 5.163 23 C -0.055 4.055 24 C -0.032 4.032 25 O -0.285 6.285 26 C 0.071 3.929 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.233 0.767 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.160 0.840 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 26.832 -20.918 -6.441 34.627 hybrid contribution -1.956 -0.666 -2.120 2.961 sum 24.876 -21.584 -8.561 34.029 Atomic orbital electron populations 1.69939 1.05915 1.27786 1.47990 1.24712 0.94455 0.98973 0.93145 0.86735 0.81927 0.83272 0.79920 1.19225 1.19899 1.15902 1.22314 0.88244 0.97551 1.58891 0.89374 1.84814 1.09317 0.99967 1.97433 1.23275 0.93839 1.04487 1.05855 1.20281 0.90640 0.82134 0.75213 1.90715 1.58782 1.42157 1.47485 1.45834 1.07141 1.08230 1.78030 1.21115 0.81695 0.94139 1.03203 1.22136 0.87337 0.96406 1.01961 1.60207 1.10828 1.09281 1.50577 1.20203 0.84335 0.89971 1.03599 1.24431 0.96589 1.03984 0.82571 1.74670 0.95972 1.17617 1.23156 1.74022 1.12682 1.17174 1.07546 1.25446 0.88136 1.06263 0.93605 1.45967 1.07905 1.53993 1.08406 1.22819 1.00610 1.05276 0.76799 1.23047 0.85808 0.94668 0.99641 1.88270 1.55770 1.53555 1.30878 1.21341 0.88962 1.04513 0.78075 0.91924 0.88490 0.88353 0.76661 0.90360 0.91806 0.94054 0.89404 0.83954 0.86785 0.92904 0.88081 0.87694 0.85647 0.91047 0.88827 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.33 13.97 55.49 0.78 -25.55 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.63 27.74 -169.99 -4.71 16.92 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 11 C 0.53 9.04 7.85 -10.99 -0.09 8.95 16 12 O -0.52 -10.95 15.86 5.55 0.09 -10.87 16 13 N -0.74 -8.43 5.56 -60.29 -0.33 -8.76 16 14 C 0.12 1.21 5.93 -4.04 -0.02 1.19 16 15 C 0.05 0.32 5.80 -3.82 -0.02 0.29 16 16 N -0.68 -4.55 6.49 -115.05 -0.75 -5.30 16 17 C 0.15 0.89 6.12 -4.97 -0.03 0.86 16 18 C 0.19 1.68 7.60 -155.69 -1.18 0.50 16 19 N -0.27 -3.42 12.24 32.65 0.40 -3.02 16 20 N -0.27 -3.29 12.20 32.77 0.40 -2.89 16 21 C 0.13 1.13 7.90 -155.26 -1.23 -0.10 16 22 N -0.47 -3.24 3.12 -110.76 -0.35 -3.59 16 23 C 0.07 0.18 7.14 -3.87 -0.03 0.16 16 24 C 0.05 0.10 6.81 37.43 0.26 0.35 16 25 O -0.37 -1.75 10.80 -35.23 -0.38 -2.13 16 26 C 0.15 0.71 7.29 36.05 0.26 0.98 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 30 H 0.40 3.29 8.47 -40.82 -0.35 2.95 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.34 2.02 8.72 -39.29 -0.34 1.68 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.19 8.09 -51.93 -0.42 -0.23 16 38 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 40 H 0.13 -0.03 8.14 -51.93 -0.42 -0.45 16 41 H 0.07 0.13 8.09 -51.93 -0.42 -0.29 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -39.15 379.04 -8.97 -48.11 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.18 Total: -2.30 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.65 Total: -0.79 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.15 Total: -49.11 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.29 Total: -13.00 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.15 -8.97 -48.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.686 kcal (2) G-P(sol) polarization free energy of solvation -39.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds