Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86792 * 120.00507 * 2 1 4 4 H 1.48496 * 109.47217 * 269.99948 * 3 2 1 5 5 H 1.48508 * 109.47079 * 29.99649 * 3 2 1 6 6 H 1.48498 * 109.47467 * 149.99740 * 3 2 1 7 7 C 1.38802 * 119.99438 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00109 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99718 * 180.02562 * 7 2 1 10 10 C 1.81007 * 99.99998 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47197 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99681 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99955 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99820 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46871 * 179.97438 * 14 13 11 16 16 N 1.46901 * 109.46916 * 179.97438 * 15 14 13 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 15 19 19 N 1.30960 * 126.48526 * 90.02620 * 18 17 16 20 20 N 1.29022 * 109.76305 * 179.97438 * 19 18 17 21 21 C 1.29529 * 109.45773 * 359.97243 * 20 19 18 22 22 N 1.34318 * 126.48967 * 269.71602 * 18 17 16 23 23 C 1.46324 * 130.08518 * 0.14800 * 22 18 17 24 24 C 1.53523 * 108.04923 * 163.72067 * 23 22 18 25 25 O 1.43025 * 109.76141 * 48.20798 * 24 23 22 26 26 C 1.43724 * 113.90891 * 289.70068 * 25 24 23 27 27 H 0.97005 * 119.99641 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46946 * 59.99449 * 10 9 7 29 29 H 1.09006 * 109.46691 * 299.99442 * 10 9 7 30 30 H 0.97000 * 120.00338 * 359.97438 * 13 11 10 31 31 H 1.08995 * 109.47316 * 60.00405 * 14 13 11 32 32 H 1.08996 * 109.47008 * 299.99302 * 14 13 11 33 33 H 1.09004 * 109.46889 * 60.00248 * 15 14 13 34 34 H 1.08995 * 109.47384 * 299.99888 * 15 14 13 35 35 H 1.00901 * 111.00067 * 303.95263 * 16 15 14 36 36 H 1.09001 * 109.46798 * 300.00327 * 17 16 15 37 37 H 1.08998 * 109.46961 * 60.00043 * 17 16 15 38 38 H 1.09001 * 109.74872 * 283.36023 * 23 22 18 39 39 H 1.08996 * 109.74818 * 44.03800 * 23 22 18 40 40 H 1.09005 * 109.42096 * 168.29110 * 24 23 22 41 41 H 1.08994 * 109.42524 * 288.17693 * 24 23 22 42 42 H 1.08998 * 110.37369 * 290.05290 * 26 25 24 43 43 H 1.08995 * 109.30772 * 169.11811 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0462 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4701 -2.1373 0.0014 9 16 3.7722 -1.2022 0.0012 10 6 4.0864 -2.9848 0.0025 11 6 5.5728 -3.2329 0.0039 12 8 6.3439 -2.2966 0.0035 13 7 6.0454 -4.4950 0.0045 14 6 7.4904 -4.7361 0.0053 15 6 7.7560 -6.2430 0.0065 16 7 9.2049 -6.4848 0.0067 17 6 9.4984 -7.9242 0.0073 18 6 10.9909 -8.1325 0.0080 19 7 11.7616 -8.2403 1.0614 20 7 12.9855 -8.4116 0.6908 21 6 13.0473 -8.4209 -0.6030 22 7 11.7818 -8.2486 -1.0714 23 6 11.4455 -8.2061 -2.4948 24 6 12.7429 -7.9796 -3.2836 25 8 13.7513 -8.8849 -2.8262 26 6 14.2418 -8.5923 -1.5073 27 1 -0.4850 0.8401 -0.0004 28 1 3.6437 -3.4324 -0.8872 29 1 3.6431 -3.4312 0.8928 30 1 5.4287 -5.2438 0.0045 31 1 7.9329 -4.2889 0.8953 32 1 7.9337 -4.2895 -0.8846 33 1 7.3134 -6.6906 -0.8833 34 1 7.3127 -6.6893 0.8966 35 1 9.6482 -6.0260 -0.7751 36 1 9.0675 -8.3825 0.8974 37 1 9.0676 -8.3832 -0.8826 38 1 10.9925 -9.1512 -2.7946 39 1 10.7506 -7.3881 -2.6848 40 1 12.5569 -8.1502 -4.3441 41 1 13.0830 -6.9547 -3.1355 42 1 14.8324 -7.6762 -1.5167 43 1 14.8538 -9.4237 -1.1577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = -21.521779 kcal Electronic energy + Delta-G solvation = -25650.316989 eV Core-core repulsion = 21664.374998 eV Total energy + Delta-G solvation = -3985.941991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.48400 -40.66794 -39.66203 -38.03237 -36.06494 -35.39724 -34.66778 -32.97202 -31.82246 -31.14643 -29.34303 -27.86785 -27.49883 -26.07455 -25.11826 -23.26285 -22.41292 -21.82854 -21.29121 -19.90254 -18.68588 -18.07179 -17.91748 -17.55196 -17.21879 -17.08504 -16.90374 -16.71358 -16.33896 -16.25021 -15.84653 -15.58918 -15.25758 -15.09413 -14.86082 -14.65779 -14.48426 -14.28689 -13.66838 -13.54695 -13.34253 -13.21961 -13.01754 -12.81213 -12.64266 -12.55443 -12.46686 -12.37665 -11.86828 -11.54725 -11.37992 -11.16814 -11.12158 -11.06122 -10.52751 -10.30408 -10.16515 -9.60146 -8.99287 -8.51372 -6.22026 0.57568 0.99461 1.25518 1.31282 1.46949 1.54457 1.56308 1.62541 2.16714 2.25549 2.55498 2.70649 2.87086 2.90464 3.09170 3.25567 3.38175 3.69613 3.81970 3.89768 3.95529 3.97527 4.08929 4.19596 4.25376 4.27820 4.42519 4.48626 4.48989 4.50818 4.59622 4.69776 4.72685 4.89627 4.90998 4.96886 5.35567 5.62865 5.71005 5.71231 5.81765 6.11853 6.14815 6.46447 6.94130 7.19686 7.54567 8.60857 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.029499 B = 0.001506 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.956395 B =18588.732344 C =18832.321723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.238 1.238 7 C -0.529 4.529 8 H 0.064 0.936 9 S -0.180 6.180 10 C -0.110 4.110 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.709 5.709 14 C 0.124 3.876 15 C 0.065 3.935 16 N -0.693 5.693 17 C 0.156 3.844 18 C 0.194 3.806 19 N -0.329 5.329 20 N -0.323 5.323 21 C 0.134 3.866 22 N -0.467 5.467 23 C 0.061 3.939 24 C 0.041 3.959 25 O -0.380 6.380 26 C 0.152 3.848 27 H 0.277 0.723 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.419 0.581 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.347 0.653 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.819 -23.583 -10.253 36.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.047 5.953 10 C -0.261 4.261 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.363 5.363 14 C 0.000 4.000 15 C -0.064 4.064 16 N -0.326 5.326 17 C 0.025 3.975 18 C -0.075 4.075 19 N -0.170 5.170 20 N -0.163 5.163 21 C -0.135 4.135 22 N -0.159 5.159 23 C -0.060 4.060 24 C -0.036 4.036 25 O -0.297 6.297 26 C 0.073 3.927 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.257 0.743 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.166 0.834 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 27.460 -22.137 -8.275 36.229 hybrid contribution -2.118 -0.478 -1.618 2.708 sum 25.342 -22.615 -9.893 35.377 Atomic orbital electron populations 1.70016 1.07270 1.28987 1.49152 1.25547 0.95254 1.02204 0.92922 0.85879 0.80657 0.79699 0.80215 1.18630 1.18443 1.16188 1.22464 0.90222 0.96720 1.58212 0.91799 1.84765 1.06472 1.06493 1.97602 1.23268 0.95758 0.99436 1.07678 1.19958 0.89420 0.83345 0.75238 1.90706 1.59400 1.43984 1.50214 1.45536 1.08501 1.06888 1.75414 1.21182 0.79946 0.96855 1.02026 1.21988 0.87345 0.93422 1.03641 1.60097 1.11147 1.10004 1.51369 1.20272 0.82578 0.89594 1.05039 1.24856 0.97547 1.02678 0.82455 1.74534 0.96781 1.20044 1.25592 1.73885 1.13138 1.19495 1.09742 1.26048 0.89741 1.04560 0.93182 1.46201 1.07074 1.52918 1.09707 1.23225 1.01531 1.07027 0.74266 1.23311 0.84927 0.94454 1.00893 1.88257 1.56538 1.54520 1.30351 1.21526 0.87821 1.05665 0.77692 0.91395 0.86468 0.86722 0.74306 0.92688 0.91999 0.91178 0.88823 0.83396 0.87133 0.89503 0.86708 0.85310 0.82923 0.90728 0.87248 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.22 13.97 21.65 0.30 -54.92 16 2 C 0.05 2.68 5.50 84.86 0.47 3.15 16 3 Si 0.91 44.63 27.74 68.60 1.90 46.53 16 4 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 7 C -0.53 -30.30 10.04 67.95 0.68 -29.61 16 8 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 9 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 10 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 11 C 0.54 17.23 7.85 87.66 0.69 17.91 16 12 O -0.56 -23.51 15.86 -3.05 -0.05 -23.56 16 13 N -0.71 -14.17 5.56 -463.06 -2.57 -16.74 16 14 C 0.12 2.16 5.93 86.38 0.51 2.67 16 15 C 0.06 0.58 5.80 86.30 0.50 1.08 16 16 N -0.69 -7.59 6.49 -517.92 -3.36 -10.95 16 17 C 0.16 1.47 6.12 85.55 0.52 1.99 16 18 C 0.19 3.21 7.60 138.22 1.05 4.26 16 19 N -0.33 -8.45 12.24 -50.62 -0.62 -9.07 16 20 N -0.32 -8.04 12.20 -50.24 -0.61 -8.65 16 21 C 0.13 2.21 7.90 138.12 1.09 3.30 16 22 N -0.47 -5.73 3.12 -504.32 -1.57 -7.30 16 23 C 0.06 0.14 7.14 86.59 0.62 0.76 16 24 C 0.04 0.06 6.81 72.16 0.49 0.55 16 25 O -0.38 -2.86 10.80 -148.98 -1.61 -4.47 16 26 C 0.15 1.29 7.29 71.27 0.52 1.81 16 27 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 28 H 0.12 3.72 8.14 -2.40 -0.02 3.70 16 29 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 30 H 0.42 5.24 8.47 -92.71 -0.79 4.45 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.35 3.18 8.72 -89.69 -0.78 2.40 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 0.24 8.09 -2.39 -0.02 0.22 16 38 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.15 -0.62 8.14 -2.38 -0.02 -0.64 16 41 H 0.07 0.08 8.09 -2.39 -0.02 0.06 16 42 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -88.46 379.04 -2.21 -90.67 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -0.55 Total: 4.01 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 7.58 Total: 4.40 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -8.44 Total: -107.63 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.66 Total: -28.02 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -88.46 -2.21 -90.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.152 kcal (2) G-P(sol) polarization free energy of solvation -88.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds