Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47029 * 132.15329 * 3 2 1 5 5 N 1.46506 * 109.47214 * 12.15959 * 3 2 1 6 6 C 1.34774 * 120.00584 * 84.99823 * 5 3 2 7 7 O 1.21603 * 119.99460 * 359.97438 * 6 5 3 8 8 C 1.47424 * 120.00239 * 180.02562 * 6 5 3 9 9 C 1.41290 * 126.41603 * 359.68760 * 8 6 5 10 10 N 1.30444 * 108.02249 * 179.85448 * 9 8 6 11 11 N 1.39929 * 108.89888 * 0.40899 * 10 9 8 12 12 C 1.46504 * 125.75707 * 179.73448 * 11 10 9 13 13 C 1.50695 * 109.47156 * 270.00134 * 12 11 10 14 14 H 1.08002 * 120.00186 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99593 * 179.97438 * 13 12 11 16 16 N 1.31524 * 119.99701 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00298 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47225 * 89.99913 * 17 15 13 19 19 H 1.48500 * 109.47063 * 209.99665 * 17 15 13 20 20 H 1.48493 * 109.47185 * 329.99478 * 17 15 13 21 21 C 1.34257 * 108.49241 * 359.73552 * 11 10 9 22 22 C 1.50697 * 126.29483 * 179.97438 * 21 11 10 23 23 C 1.50698 * 109.47264 * 252.15596 * 3 2 1 24 24 C 1.38244 * 119.97167 * 259.99969 * 23 3 2 25 25 C 1.38205 * 120.02298 * 180.02562 * 24 23 3 26 26 C 1.38459 * 119.97412 * 0.24026 * 25 24 23 27 27 F 1.35099 * 120.02759 * 179.72396 * 26 25 24 28 28 C 1.38466 * 119.94836 * 359.48301 * 26 25 24 29 29 C 1.38196 * 119.97140 * 0.53984 * 28 26 25 30 30 H 4.18742 * 15.03882 * 0.02562 * 4 2 1 31 31 H 0.97006 * 119.99459 * 265.00112 * 5 3 2 32 32 H 1.08004 * 125.98865 * 359.97438 * 9 8 6 33 33 H 1.09003 * 109.46499 * 30.00404 * 12 11 10 34 34 H 1.08997 * 109.46959 * 149.99223 * 12 11 10 35 35 H 0.97001 * 119.99630 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47045 * 270.00118 * 22 21 11 37 37 H 1.09004 * 109.47186 * 29.99810 * 22 21 11 38 38 H 1.08995 * 109.47736 * 149.99925 * 22 21 11 39 39 H 1.07999 * 119.98898 * 0.02589 * 24 23 3 40 40 H 1.08002 * 120.00949 * 179.97438 * 25 24 23 41 41 H 1.07997 * 120.00962 * 180.25357 * 28 26 25 42 42 H 1.08000 * 119.98525 * 179.74601 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.6905 -0.7619 5 7 3.1349 -1.3494 -0.2909 6 6 3.2639 -1.7588 -1.5685 7 8 2.9738 -1.0076 -2.4798 8 6 3.7554 -3.1175 -1.8612 9 6 4.1341 -4.0947 -0.9136 10 7 4.5080 -5.1627 -1.5626 11 7 4.3970 -4.9204 -2.9362 12 6 4.7267 -5.8696 -4.0024 13 6 6.1740 -5.7072 -4.3896 14 1 6.7868 -4.9703 -3.8918 15 6 6.7157 -6.4993 -5.3796 16 7 7.9787 -6.3573 -5.7180 17 14 5.6555 -7.7733 -6.2412 18 1 5.0113 -7.1591 -7.4300 19 1 6.5036 -8.9137 -6.6718 20 1 4.6088 -8.2599 -5.3070 21 6 3.9374 -3.6713 -3.1125 22 6 3.6701 -2.9973 -4.4336 23 6 3.1481 0.4362 1.3524 24 6 3.5738 1.7374 1.5449 25 6 4.0351 2.1378 2.7846 26 6 4.0753 1.2340 3.8327 27 9 4.5312 1.6229 5.0436 28 6 3.6433 -0.0674 3.6403 29 6 3.1829 -0.4656 2.3996 30 1 -1.0500 -0.0002 0.0009 31 1 3.3659 -1.9487 0.4361 32 1 4.1154 -3.9785 0.1600 33 1 4.5570 -6.8865 -3.6486 34 1 4.0946 -5.6763 -4.8691 35 1 8.3597 -6.9144 -6.4147 36 1 4.5706 -2.4819 -4.7674 37 1 3.3851 -3.7463 -5.1725 38 1 2.8611 -2.2763 -4.3166 39 1 3.5460 2.4411 0.7261 40 1 4.3680 3.1543 2.9346 41 1 3.6704 -0.7720 4.4582 42 1 2.8498 -1.4817 2.2482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129717769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = 53.910352 kcal Electronic energy + Delta-G solvation = -27672.019275 eV Core-core repulsion = 23533.984354 eV Total energy + Delta-G solvation = -4138.034921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.128 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.91253 -42.37718 -40.91316 -39.67109 -36.57735 -35.77288 -34.13216 -33.45708 -32.81981 -32.17335 -31.79662 -29.72642 -28.41357 -27.10364 -24.94879 -24.25440 -23.39747 -22.76593 -21.35075 -20.64039 -19.35811 -19.28280 -18.92705 -18.46008 -17.61015 -17.15794 -16.65121 -16.58029 -16.52911 -16.28442 -15.98552 -15.70125 -15.51520 -15.10126 -14.76809 -14.63578 -14.49686 -14.41836 -14.13479 -13.96530 -13.79673 -13.70605 -13.28291 -13.13969 -13.11257 -12.99815 -12.56162 -12.15621 -12.01513 -11.85061 -11.79060 -11.59165 -11.20262 -10.91626 -10.83498 -10.41718 -10.27451 -10.09944 -9.68278 -9.49094 -8.42896 -6.54901 0.01147 0.24074 0.62868 1.29519 1.34047 1.34987 1.44350 1.49494 1.73903 1.87390 2.24787 2.42775 2.54062 2.60222 2.89596 3.25046 3.46233 3.67479 3.70606 3.71336 3.76245 3.95816 4.07382 4.17070 4.22664 4.30004 4.39461 4.48378 4.60760 4.70045 4.73416 4.88859 4.92743 5.04333 5.06151 5.11668 5.12543 5.17908 5.19015 5.28667 5.49205 5.61487 5.82865 5.84542 6.20218 6.48214 6.50639 6.67249 6.78284 7.08991 7.26822 8.73549 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.002274 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.966693 B =12311.565671 C =13026.241267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.231 4.231 3 C 0.308 3.692 4 H 0.109 0.891 5 N -0.709 5.709 6 C 0.611 3.389 7 O -0.574 6.574 8 C -0.330 4.330 9 C 0.081 3.919 10 N -0.332 5.332 11 N -0.338 5.338 12 C 0.233 3.767 13 C -0.553 4.553 14 H 0.027 0.973 15 C 0.023 3.977 16 N -0.935 5.935 17 Si 0.948 3.052 18 H -0.252 1.252 19 H -0.278 1.278 20 H -0.242 1.242 21 C 0.150 3.850 22 C -0.090 4.090 23 C -0.105 4.105 24 C -0.075 4.075 25 C -0.152 4.152 26 C 0.085 3.915 27 F -0.148 7.148 28 C -0.150 4.150 29 C -0.079 4.079 30 H 0.247 0.753 31 H 0.413 0.587 32 H 0.227 0.773 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.274 0.726 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.143 14.299 16.540 26.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.232 4.232 3 C 0.204 3.796 4 H 0.127 0.873 5 N -0.362 5.362 6 C 0.401 3.599 7 O -0.454 6.454 8 C -0.345 4.345 9 C -0.106 4.106 10 N -0.151 5.151 11 N -0.114 5.114 12 C 0.113 3.887 13 C -0.591 4.591 14 H 0.045 0.955 15 C -0.177 4.177 16 N -0.573 5.573 17 Si 0.769 3.231 18 H -0.176 1.176 19 H -0.203 1.203 20 H -0.165 1.165 21 C 0.015 3.985 22 C -0.148 4.148 23 C -0.106 4.106 24 C -0.093 4.093 25 C -0.170 4.170 26 C 0.066 3.934 27 F -0.126 7.126 28 C -0.169 4.169 29 C -0.097 4.097 30 H 0.263 0.737 31 H 0.251 0.749 32 H 0.243 0.757 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.171 0.829 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.665 13.429 15.834 25.418 hybrid contribution 0.201 -0.014 0.000 0.201 sum -14.464 13.415 15.834 25.296 Atomic orbital electron populations 1.25730 0.96722 0.97028 0.99113 1.23432 0.94834 1.03107 1.01841 1.16258 0.83555 0.85029 0.94808 0.87332 1.45661 1.67705 1.15453 1.07332 1.17118 0.75401 0.84797 0.82612 1.90696 1.52685 1.56126 1.45898 1.19877 1.24379 0.97984 0.92269 1.24513 0.95600 0.89239 1.01255 1.77096 1.25053 1.25686 0.87257 1.48764 1.45862 1.11153 1.05647 1.19901 0.95954 0.88798 0.84005 1.21181 0.94709 1.21817 1.21351 0.95504 1.25816 0.96360 0.98912 0.96627 1.70029 1.14798 1.41106 1.31384 0.85712 0.79168 0.78324 0.79877 1.17630 1.20320 1.16536 1.21979 0.92744 0.85551 0.98273 1.20606 1.03862 1.00420 0.89885 1.19700 1.01627 0.95347 0.93934 1.21082 0.95579 0.95225 0.97407 1.21344 1.02571 1.01008 0.92087 1.18048 0.99871 0.94574 0.80949 1.91493 1.86744 1.91639 1.42749 1.21338 1.01185 0.94946 0.99397 1.20999 0.97172 1.00491 0.91087 0.73692 0.74864 0.75693 0.92526 0.91118 0.91659 0.90318 0.90113 0.87782 0.82923 0.82743 0.82707 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 19.25 74.32 1.43 -1.52 16 2 C -0.23 -4.79 12.81 31.12 0.40 -4.39 16 3 C 0.31 6.06 2.62 42.44 0.11 6.17 16 4 H 0.11 2.37 7.44 -2.38 -0.02 2.35 16 5 N -0.71 -15.24 4.98 -458.13 -2.28 -17.52 16 6 C 0.61 18.47 7.76 86.66 0.67 19.14 16 7 O -0.57 -20.38 14.50 -4.04 -0.06 -20.44 16 8 C -0.33 -11.14 6.13 -20.15 -0.12 -11.26 16 9 C 0.08 2.53 11.50 85.65 0.99 3.51 16 10 N -0.33 -13.47 12.50 -56.27 -0.70 -14.18 16 11 N -0.34 -14.61 3.56 -336.70 -1.20 -15.81 16 12 C 0.23 10.65 5.03 85.63 0.43 11.08 16 13 C -0.55 -30.86 9.94 25.60 0.25 -30.61 16 14 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 15 C 0.02 1.27 5.47 84.65 0.46 1.73 16 16 N -0.94 -56.09 13.96 21.45 0.30 -55.79 16 17 Si 0.95 39.89 27.47 68.60 1.88 41.78 16 18 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.24 -9.30 6.54 99.48 0.65 -8.64 16 21 C 0.15 5.83 7.01 42.14 0.30 6.13 16 22 C -0.09 -3.09 9.57 71.24 0.68 -2.41 16 23 C -0.11 -1.64 4.92 -19.86 -0.10 -1.74 16 24 C -0.07 -1.03 9.67 22.26 0.22 -0.81 16 25 C -0.15 -2.06 10.03 22.31 0.22 -1.83 16 26 C 0.08 1.33 7.30 22.38 0.16 1.49 16 27 F -0.15 -2.63 17.27 44.97 0.78 -1.85 16 28 C -0.15 -2.01 10.03 22.31 0.22 -1.78 16 29 C -0.08 -1.05 9.04 22.26 0.20 -0.85 16 30 H 0.25 2.39 7.80 -4.42 -0.03 2.35 16 31 H 0.41 6.56 5.82 -92.70 -0.54 6.02 16 32 H 0.23 4.32 7.50 -2.91 -0.02 4.30 16 33 H 0.06 2.55 7.20 -2.39 -0.02 2.53 16 34 H 0.07 2.88 6.44 -2.39 -0.02 2.87 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.08 2.82 8.14 -2.39 -0.02 2.81 16 37 H 0.08 2.56 7.05 -2.38 -0.02 2.54 16 38 H 0.10 3.37 6.50 -2.39 -0.02 3.35 16 39 H 0.15 1.56 8.04 -2.91 -0.02 1.54 16 40 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 42 H 0.15 1.41 6.91 -2.91 -0.02 1.39 16 Total: -1.00 -75.13 374.39 5.73 -69.40 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.48 Total: 22.36 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 6.53 Total: -7.95 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -3.89 Total: -103.30 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.88 Total: 41.78 kcal Total: -75.13 5.73 -69.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129717769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.308 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds