Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38324 * 119.90131 * 2 1 4 4 C 1.38291 * 120.38310 * 180.02562 * 3 2 1 5 5 C 1.38243 * 120.18455 * 359.74016 * 4 3 2 6 6 F 1.35104 * 120.09144 * 180.27954 * 5 4 3 7 7 C 1.39880 * 119.81321 * 0.51490 * 5 4 3 8 8 C 1.47537 * 120.19330 * 179.76871 * 7 5 4 9 9 O 1.21593 * 119.99856 * 269.72253 * 8 7 5 10 10 N 1.34777 * 120.00133 * 89.44805 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27865 * 10 8 7 12 12 C 1.53004 * 109.46928 * 179.97438 * 11 10 8 13 13 N 1.46893 * 109.46935 * 179.97438 * 12 11 10 14 14 C 1.46904 * 111.00073 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47182 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00205 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99740 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99549 * 179.97438 * 17 15 14 19 19 H 1.07991 * 120.00694 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99500 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00420 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00015 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47318 * 59.99569 * 22 20 18 24 24 H 1.48494 * 109.47374 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46930 * 300.00147 * 22 20 18 26 26 C 1.38206 * 119.90751 * 180.02562 * 2 1 3 27 27 F 1.35101 * 120.09361 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47207 * 269.97442 * 1 2 3 29 29 H 1.08993 * 109.47608 * 29.97964 * 1 2 3 30 30 H 1.09007 * 109.47084 * 149.97746 * 1 2 3 31 31 H 1.07995 * 119.81210 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.90405 * 180.02562 * 4 3 2 33 33 H 0.97000 * 119.99736 * 0.27139 * 10 8 7 34 34 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 35 35 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 36 36 H 1.09007 * 109.46621 * 299.99773 * 12 11 10 37 37 H 1.08997 * 109.46991 * 59.99522 * 12 11 10 38 38 H 1.00902 * 111.00363 * 56.04521 * 13 12 11 39 39 H 1.08999 * 109.47193 * 300.00002 * 14 13 12 40 40 H 1.09004 * 109.46445 * 59.99751 * 14 13 12 41 41 H 0.97000 * 119.99960 * 0.02562 * 17 15 14 42 42 H 0.97001 * 120.00389 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1991 0.0000 4 6 3.5794 1.2107 -0.0005 5 6 4.2845 0.0216 0.0043 6 9 5.6355 0.0352 0.0095 7 6 3.5953 -1.1956 -0.0011 8 6 4.3394 -2.4696 -0.0011 9 8 4.6457 -2.9947 -1.0541 10 7 4.6845 -3.0484 1.1661 11 6 5.4287 -4.3104 1.1660 12 6 5.6917 -4.7474 2.6085 13 7 6.4373 -6.0130 2.6084 14 6 6.7091 -6.4641 3.9798 15 6 7.4731 -7.7624 3.9395 16 8 7.7624 -8.2631 2.8733 17 7 7.8340 -8.3678 5.0883 18 6 8.5286 -9.5492 5.0516 19 1 8.7862 -9.9950 4.1024 20 6 8.9003 -10.1736 6.2360 21 7 8.5865 -9.6315 7.3913 22 14 9.8473 -11.7830 6.1862 23 1 11.1319 -11.5795 5.4694 24 1 10.1215 -12.2392 7.5724 25 1 9.0420 -12.8094 5.4768 26 6 2.1961 -1.1980 -0.0005 27 9 1.5206 -2.3680 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6519 2.1317 0.0004 32 1 4.1099 2.1514 -0.0001 33 1 4.4401 -2.6295 2.0061 34 1 4.8454 -5.0761 0.6546 35 1 6.3785 -4.1720 0.6497 36 1 6.2752 -3.9815 3.1195 37 1 4.7420 -4.8856 3.1252 38 1 7.2926 -5.9289 2.0797 39 1 7.3002 -5.7103 4.4999 40 1 5.7665 -6.6137 4.5065 41 1 7.6017 -7.9680 5.9410 42 1 8.8456 -10.0676 8.2181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133305295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = -136.907766 kcal Electronic energy + Delta-G solvation = -27833.117953 eV Core-core repulsion = 23256.039313 eV Total energy + Delta-G solvation = -4577.078640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.57575 -49.54759 -40.31929 -39.04045 -38.31563 -36.35037 -34.44448 -33.77971 -33.26181 -31.75425 -31.23268 -29.36153 -27.36345 -26.24856 -24.75605 -23.71484 -22.70544 -22.14034 -20.89364 -19.29744 -18.80230 -18.12529 -17.96503 -17.83463 -16.84575 -16.30507 -16.13563 -16.10686 -15.86657 -15.83907 -15.39986 -14.99857 -14.94950 -14.57948 -14.44734 -13.97042 -13.95375 -13.82410 -13.61435 -13.43194 -13.20584 -12.76672 -12.48719 -12.39774 -12.29031 -12.22170 -11.93932 -11.53360 -11.48624 -11.44542 -11.01191 -10.45325 -10.43650 -10.21513 -9.66871 -9.50483 -9.38941 -9.21115 -8.51314 -8.14223 -7.96961 -6.42076 -3.82961 0.14278 0.30887 2.09573 2.53161 2.72372 3.17339 3.20619 3.26219 3.30980 3.73984 3.88785 3.91043 4.02854 4.11358 4.18216 4.33696 4.40916 4.73672 4.83873 4.95992 5.00492 5.03622 5.12072 5.16597 5.20965 5.25415 5.30281 5.36049 5.48048 5.54690 5.70993 5.77738 5.86678 5.93050 6.03554 6.06271 6.24119 7.02375 7.11702 7.54865 7.55376 7.76292 8.05437 8.60510 9.17316 9.53212 10.04672 10.75529 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025967 B = 0.001604 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.047550 B =17452.848966 C =17695.692913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.130 4.130 3 C -0.048 4.048 4 C -0.159 4.159 5 C 0.157 3.843 6 F -0.120 7.120 7 C -0.194 4.194 8 C 0.566 3.434 9 O -0.514 6.514 10 N -0.713 5.713 11 C 0.118 3.882 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.932 3.068 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.161 3.839 27 F -0.117 7.117 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.402 0.598 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.353 0.647 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.399 27.795 -9.404 33.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.131 4.131 3 C -0.066 4.066 4 C -0.178 4.178 5 C 0.137 3.863 6 F -0.099 7.099 7 C -0.199 4.199 8 C 0.349 3.651 9 O -0.389 6.389 10 N -0.365 5.365 11 C -0.005 4.005 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.759 3.241 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C 0.141 3.859 27 F -0.096 7.096 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.237 0.763 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.172 0.828 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.226 0.774 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.444 26.514 -10.752 33.000 hybrid contribution 1.099 0.062 1.358 1.748 sum -15.345 26.576 -9.394 32.094 Atomic orbital electron populations 1.20770 0.88922 1.04028 1.03432 1.19981 0.97912 0.91202 1.03993 1.20937 0.92897 0.97694 0.95090 1.21183 0.94840 0.97271 1.04532 1.17296 0.77299 0.92316 0.99394 1.91595 1.27917 1.97185 1.93167 1.19919 0.93204 0.94455 1.12309 1.17680 0.79355 0.83571 0.84485 1.90871 1.53447 1.63535 1.31025 1.45861 1.57335 1.25182 1.08118 1.21390 0.97034 0.84406 0.97657 1.22072 0.99664 0.91241 0.95073 1.59938 1.28170 1.27885 1.13824 1.21674 1.00343 0.96315 0.89697 1.19767 0.85301 0.87347 0.85091 1.90535 1.59445 1.66987 1.29622 1.41846 1.49573 1.21796 1.06729 1.19668 1.30540 0.98218 0.94559 0.87923 1.25267 0.98174 0.99855 0.94623 1.69603 1.46996 1.40254 0.97496 0.85903 0.79841 0.81335 0.77055 1.19908 1.20982 1.19856 1.17115 0.87273 0.81836 0.99658 1.91579 1.79432 1.45466 1.93079 0.90186 0.90359 0.90693 0.83308 0.83152 0.76339 0.89717 0.90898 0.94780 0.90332 0.82751 0.93671 0.89431 0.77449 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 9.83 36.00 0.35 -0.07 16 2 C -0.13 -0.75 5.88 -104.60 -0.62 -1.36 16 3 C -0.05 -0.19 9.68 -39.53 -0.38 -0.57 16 4 C -0.16 -0.83 10.01 -39.56 -0.40 -1.22 16 5 C 0.16 1.34 7.29 -38.97 -0.28 1.05 16 6 F -0.12 -1.22 16.83 2.25 0.04 -1.18 16 7 C -0.19 -1.94 5.64 -104.86 -0.59 -2.53 16 8 C 0.57 7.25 6.54 -12.47 -0.08 7.17 16 9 O -0.51 -8.71 17.11 5.28 0.09 -8.62 16 10 N -0.71 -7.54 5.55 -61.35 -0.34 -7.88 16 11 C 0.12 1.42 5.93 -4.04 -0.02 1.40 16 12 C 0.05 0.58 5.80 -3.83 -0.02 0.56 16 13 N -0.66 -10.66 6.13 -115.06 -0.70 -11.36 16 14 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 15 C 0.44 10.42 7.82 -10.99 -0.09 10.34 16 16 O -0.58 -15.98 15.78 5.55 0.09 -15.90 16 17 N -0.56 -14.30 5.29 -10.97 -0.06 -14.35 16 18 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 C 0.16 1.41 7.23 -38.96 -0.28 1.13 16 27 F -0.12 -1.21 16.03 2.25 0.04 -1.17 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.15 8.08 -51.93 -0.42 -0.27 16 30 H 0.07 0.34 7.63 -51.93 -0.40 -0.06 16 31 H 0.15 0.12 8.06 -52.49 -0.42 -0.30 16 32 H 0.15 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.40 3.09 8.46 -40.82 -0.35 2.75 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.35 5.86 8.43 -39.29 -0.33 5.52 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -35.19 378.71 -7.26 -42.45 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -5.13 Total: 11.29 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -2.68 Total: 8.69 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.38 Total: -57.41 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.18 Total: -24.52 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.07 Total: -2.35 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.19 -7.26 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133305295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.457 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds