Wall clock time and date at job start Sat Apr 11 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38324 * 119.90131 * 2 1 4 4 C 1.38291 * 120.38310 * 180.02562 * 3 2 1 5 5 C 1.38243 * 120.18455 * 359.74016 * 4 3 2 6 6 F 1.35104 * 120.09144 * 180.27954 * 5 4 3 7 7 C 1.39880 * 119.81321 * 0.51490 * 5 4 3 8 8 C 1.47537 * 120.19330 * 179.76871 * 7 5 4 9 9 O 1.21593 * 119.99856 * 269.72253 * 8 7 5 10 10 N 1.34777 * 120.00133 * 89.44805 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27865 * 10 8 7 12 12 C 1.53004 * 109.46928 * 179.97438 * 11 10 8 13 13 N 1.46893 * 109.46935 * 179.97438 * 12 11 10 14 14 C 1.46904 * 111.00073 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47182 * 179.97438 * 14 13 12 16 16 O 1.21292 * 120.00205 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99740 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99549 * 179.97438 * 17 15 14 19 19 H 1.07991 * 120.00694 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99500 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00420 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00015 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47318 * 59.99569 * 22 20 18 24 24 H 1.48494 * 109.47374 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46930 * 300.00147 * 22 20 18 26 26 C 1.38206 * 119.90751 * 180.02562 * 2 1 3 27 27 F 1.35101 * 120.09361 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47207 * 269.97442 * 1 2 3 29 29 H 1.08993 * 109.47608 * 29.97964 * 1 2 3 30 30 H 1.09007 * 109.47084 * 149.97746 * 1 2 3 31 31 H 1.07995 * 119.81210 * 0.02562 * 3 2 1 32 32 H 1.07995 * 119.90405 * 180.02562 * 4 3 2 33 33 H 0.97000 * 119.99736 * 0.27139 * 10 8 7 34 34 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 35 35 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 36 36 H 1.09007 * 109.46621 * 299.99773 * 12 11 10 37 37 H 1.08997 * 109.46991 * 59.99522 * 12 11 10 38 38 H 1.00902 * 111.00363 * 56.04521 * 13 12 11 39 39 H 1.08999 * 109.47193 * 300.00002 * 14 13 12 40 40 H 1.09004 * 109.46445 * 59.99751 * 14 13 12 41 41 H 0.97000 * 119.99960 * 0.02562 * 17 15 14 42 42 H 0.97001 * 120.00389 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1991 0.0000 4 6 3.5794 1.2107 -0.0005 5 6 4.2845 0.0216 0.0043 6 9 5.6355 0.0352 0.0095 7 6 3.5953 -1.1956 -0.0011 8 6 4.3394 -2.4696 -0.0011 9 8 4.6457 -2.9947 -1.0541 10 7 4.6845 -3.0484 1.1661 11 6 5.4287 -4.3104 1.1660 12 6 5.6917 -4.7474 2.6085 13 7 6.4373 -6.0130 2.6084 14 6 6.7091 -6.4641 3.9798 15 6 7.4731 -7.7624 3.9395 16 8 7.7624 -8.2631 2.8733 17 7 7.8340 -8.3678 5.0883 18 6 8.5286 -9.5492 5.0516 19 1 8.7862 -9.9950 4.1024 20 6 8.9003 -10.1736 6.2360 21 7 8.5865 -9.6315 7.3913 22 14 9.8473 -11.7830 6.1862 23 1 11.1319 -11.5795 5.4694 24 1 10.1215 -12.2392 7.5724 25 1 9.0420 -12.8094 5.4768 26 6 2.1961 -1.1980 -0.0005 27 9 1.5206 -2.3680 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6519 2.1317 0.0004 32 1 4.1099 2.1514 -0.0001 33 1 4.4401 -2.6295 2.0061 34 1 4.8454 -5.0761 0.6546 35 1 6.3785 -4.1720 0.6497 36 1 6.2752 -3.9815 3.1195 37 1 4.7420 -4.8856 3.1252 38 1 7.2926 -5.9289 2.0797 39 1 7.3002 -5.7103 4.4999 40 1 5.7665 -6.6137 4.5065 41 1 7.6017 -7.9680 5.9410 42 1 8.8456 -10.0676 8.2181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133305295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:07 Heat of formation + Delta-G solvation = -164.386427 kcal Electronic energy + Delta-G solvation = -27834.309518 eV Core-core repulsion = 23256.039313 eV Total energy + Delta-G solvation = -4578.270205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.25118 -50.21217 -41.19655 -40.18601 -39.64806 -37.58335 -36.04381 -35.37193 -33.78300 -33.28219 -32.32078 -30.52384 -27.89260 -27.67011 -26.00395 -24.92277 -23.32757 -23.08933 -21.75994 -21.12675 -19.94040 -19.46155 -18.83669 -18.60001 -17.77487 -17.68797 -17.26075 -16.97865 -16.79449 -16.58032 -16.54579 -16.19081 -16.00885 -15.76064 -15.59304 -15.27690 -15.14404 -14.87529 -14.48113 -14.28794 -14.10985 -14.02352 -13.54070 -13.36983 -13.20845 -12.97465 -12.92446 -12.74141 -12.69734 -12.62593 -12.50505 -12.44082 -12.12849 -11.51782 -11.44002 -10.41219 -10.38757 -10.22182 -10.03096 -9.71470 -9.43563 -8.47762 -5.96620 -0.39748 -0.19016 1.12953 1.39269 1.41380 1.52174 1.73426 2.03561 2.15838 2.29149 2.59875 2.92206 3.19351 3.21965 3.30353 3.54431 3.59503 3.66453 3.79740 3.94555 4.01908 4.28878 4.33082 4.38615 4.47214 4.55624 4.58236 4.74567 4.77486 4.79300 4.80533 4.83259 4.93745 5.08356 5.16711 5.20647 5.39833 5.61106 5.79949 6.03920 6.17094 6.26926 6.58813 6.84384 7.11284 7.54474 8.10192 8.69244 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025967 B = 0.001604 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.047550 B =17452.848966 C =17695.692913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.122 4.122 3 C -0.029 4.029 4 C -0.143 4.143 5 C 0.136 3.864 6 F -0.137 7.137 7 C -0.215 4.215 8 C 0.561 3.439 9 O -0.568 6.568 10 N -0.699 5.699 11 C 0.125 3.875 12 C 0.060 3.940 13 N -0.685 5.685 14 C 0.068 3.932 15 C 0.435 3.565 16 O -0.625 6.625 17 N -0.571 5.571 18 C -0.337 4.337 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.918 5.918 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.273 1.273 26 C 0.137 3.863 27 F -0.135 7.135 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.195 0.805 32 H 0.181 0.819 33 H 0.418 0.582 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.346 0.654 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.398 0.602 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.824 30.721 -8.151 36.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.047 4.047 4 C -0.162 4.162 5 C 0.116 3.884 6 F -0.115 7.115 7 C -0.220 4.220 8 C 0.347 3.653 9 O -0.447 6.447 10 N -0.350 5.350 11 C 0.001 3.999 12 C -0.069 4.069 13 N -0.318 5.318 14 C -0.064 4.064 15 C 0.222 3.778 16 O -0.512 6.512 17 N -0.208 5.208 18 C -0.467 4.467 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.559 5.559 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.193 1.193 25 H -0.198 1.198 26 C 0.117 3.883 27 F -0.113 7.113 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.212 0.788 32 H 0.199 0.801 33 H 0.256 0.744 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.165 0.835 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.232 0.768 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.898 29.482 -9.435 35.757 hybrid contribution 1.469 -0.744 0.943 1.897 sum -16.429 28.738 -8.492 34.174 Atomic orbital electron populations 1.20875 0.87278 1.04714 1.04373 1.20347 0.99091 0.90556 1.02278 1.21475 0.92418 0.98584 0.92217 1.21586 0.95434 0.96954 1.02205 1.17618 0.76811 0.92988 1.01003 1.91550 1.29151 1.97273 1.93527 1.19793 0.93727 0.93490 1.15029 1.18239 0.78743 0.84337 0.84012 1.90826 1.55769 1.65307 1.32837 1.45733 1.56332 1.24424 1.08553 1.21189 0.96257 0.84535 0.97936 1.22044 1.00121 0.89997 0.94728 1.59900 1.28210 1.30624 1.13097 1.21534 1.00659 0.93253 0.90983 1.20907 0.84264 0.88793 0.83821 1.90504 1.60927 1.68677 1.31101 1.41904 1.49870 1.21517 1.07549 1.19634 1.32799 1.00053 0.94168 0.90426 1.26031 0.98451 1.02699 0.93972 1.69657 1.47079 1.41300 0.97882 0.84991 0.78352 0.77321 0.77678 1.19749 1.19327 1.19839 1.17429 0.86935 0.82425 1.01545 1.91527 1.79639 1.46697 1.93483 0.89008 0.87657 0.92057 0.78789 0.80148 0.74446 0.91882 0.92029 0.92280 0.88688 0.83482 0.90811 0.87225 0.76821 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 9.83 71.24 0.70 0.17 16 2 C -0.12 -1.11 5.88 -19.85 -0.12 -1.22 16 3 C -0.03 -0.11 9.68 22.30 0.22 0.11 16 4 C -0.14 -1.03 10.01 22.28 0.22 -0.81 16 5 C 0.14 2.21 7.29 22.67 0.17 2.37 16 6 F -0.14 -2.77 16.83 44.97 0.76 -2.01 16 7 C -0.22 -4.40 5.64 -20.02 -0.11 -4.51 16 8 C 0.56 15.24 6.54 86.70 0.57 15.81 16 9 O -0.57 -20.81 17.11 -4.01 -0.07 -20.88 16 10 N -0.70 -15.12 5.55 -466.26 -2.59 -17.71 16 11 C 0.12 3.09 5.93 86.38 0.51 3.61 16 12 C 0.06 1.32 5.80 86.31 0.50 1.82 16 13 N -0.69 -21.60 6.13 -517.93 -3.17 -24.77 16 14 C 0.07 2.26 6.17 85.56 0.53 2.79 16 15 C 0.43 20.83 7.82 87.66 0.69 21.51 16 16 O -0.63 -35.43 15.78 -3.07 -0.05 -35.47 16 17 N -0.57 -29.39 5.29 -306.99 -1.62 -31.02 16 18 C -0.34 -19.34 9.68 84.04 0.81 -18.52 16 19 H 0.08 4.76 7.16 -2.92 -0.02 4.74 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 22 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 C 0.14 2.37 7.23 22.67 0.16 2.53 16 27 F -0.14 -2.90 16.03 44.97 0.72 -2.18 16 28 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.10 -0.07 8.08 -2.39 -0.02 -0.08 16 30 H 0.06 0.48 7.63 -2.38 -0.02 0.46 16 31 H 0.20 -0.96 8.06 -2.91 -0.02 -0.98 16 32 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 33 H 0.42 6.19 8.46 -92.71 -0.78 5.41 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.35 11.65 8.43 -89.69 -0.76 10.89 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 41 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 42 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -81.16 378.71 0.44 -80.72 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -1.16 Total: 31.73 kcal Atomic # 6 Polarization: 20.18 SS G_CDS: 5.31 Total: 25.49 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -7.10 Total: -122.68 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.12 Total: -56.35 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 1.48 Total: -4.19 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -81.16 0.44 -80.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133305295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.666 kcal (2) G-P(sol) polarization free energy of solvation -81.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds