Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46983 * 2 1 4 4 C 1.53004 * 109.47486 * 240.00582 * 2 1 3 5 5 O 1.45199 * 109.47274 * 120.00186 * 2 1 3 6 6 C 1.34725 * 117.00216 * 60.00232 * 5 2 1 7 7 O 1.21479 * 119.99647 * 0.02562 * 6 5 2 8 8 C 1.47711 * 120.00323 * 180.27566 * 6 5 2 9 9 C 1.39520 * 120.01293 * 179.44904 * 8 6 5 10 10 N 1.32000 * 119.97496 * 179.70361 * 9 8 6 11 11 C 1.32794 * 119.99566 * 0.57260 * 10 9 8 12 12 N 1.38560 * 119.99086 * 179.72521 * 11 10 9 13 13 C 1.38436 * 120.00176 * 173.70049 * 12 11 10 14 14 C 1.38941 * 119.99948 * 299.75351 * 13 12 11 15 15 H 1.08001 * 119.99499 * 158.76881 * 14 13 12 16 16 C 1.40867 * 120.00185 * 338.77006 * 14 13 12 17 17 N 1.30312 * 119.99697 * 350.89225 * 16 14 13 18 18 Si 1.86800 * 119.99800 * 170.89032 * 16 14 13 19 19 H 1.48500 * 109.47015 * 89.99994 * 18 16 14 20 20 H 1.48501 * 109.46839 * 210.00072 * 18 16 14 21 21 H 1.48501 * 109.47476 * 329.99883 * 18 16 14 22 22 C 1.41133 * 119.99825 * 119.74951 * 13 12 11 23 23 C 1.43205 * 120.00275 * 185.26523 * 22 13 12 24 24 N 9.34172 * 143.92116 * 155.16346 * 5 1 2 25 25 C 1.43201 * 120.00178 * 5.26991 * 22 13 12 26 26 N 8.82265 * 121.59599 * 179.18079 * 5 1 2 27 27 C 1.39838 * 120.01777 * 359.70604 * 11 10 9 28 28 N 1.31468 * 120.02915 * 359.97438 * 27 11 10 29 29 H 1.08996 * 109.47236 * 299.99823 * 1 2 3 30 30 H 1.09007 * 109.46926 * 60.00216 * 1 2 3 31 31 H 1.09000 * 109.46698 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46765 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47343 * 300.00154 * 3 2 1 34 34 H 1.09004 * 109.46422 * 60.00117 * 3 2 1 35 35 H 1.08999 * 109.46638 * 299.99931 * 4 2 1 36 36 H 1.08993 * 109.47179 * 59.99638 * 4 2 1 37 37 H 1.09000 * 109.47448 * 179.97438 * 4 2 1 38 38 H 1.07996 * 120.00962 * 359.97438 * 9 8 6 39 39 H 0.96997 * 120.00291 * 353.70505 * 12 11 10 40 40 H 0.97006 * 119.99759 * 185.05352 * 17 16 14 41 41 H 1.08006 * 119.98478 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6521 -1.9732 1.3384 7 8 0.9517 -2.5104 0.5038 8 6 2.1023 -2.7313 2.5235 9 6 1.7182 -4.0624 2.6878 10 7 2.1258 -4.7409 3.7441 11 6 2.8918 -4.1530 4.6557 12 7 3.3149 -4.8636 5.7674 13 6 4.2174 -4.2953 6.6500 14 6 5.4762 -3.9110 6.2050 15 1 6.0452 -3.1799 6.7602 16 6 6.0103 -4.4748 5.0297 17 7 5.4094 -5.4798 4.4580 18 14 7.5797 -3.7816 4.2910 19 1 8.7520 -4.4887 4.8663 20 1 7.5600 -3.9726 2.8184 21 1 7.6747 -2.3323 4.6008 22 6 3.8586 -4.1062 8.0018 23 6 4.7469 -3.4170 8.8888 24 7 5.4516 -2.8702 9.5922 25 6 2.6063 -4.6035 8.4867 26 7 1.6129 -4.9981 8.8713 27 6 3.2719 -2.8171 4.4938 28 7 2.8716 -2.1424 3.4388 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6765 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1392 37 1 3.1301 -0.7207 -1.2495 38 1 1.0912 -4.5388 1.9487 39 1 2.9788 -5.7594 5.9273 40 1 5.8149 -5.9151 3.6917 41 1 3.8946 -2.3393 5.2358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = 21.253125 kcal Electronic energy + Delta-G solvation = -28742.959984 eV Core-core repulsion = 24623.428901 eV Total energy + Delta-G solvation = -4119.531083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09330 -40.27167 -37.90707 -36.83232 -35.53144 -34.91757 -34.45692 -33.92031 -33.46472 -31.36760 -29.47505 -27.51112 -27.50309 -27.44027 -24.96981 -24.32868 -22.43300 -21.50571 -19.83164 -19.39616 -18.15354 -17.61182 -17.49364 -16.64001 -16.49725 -16.26821 -15.96308 -15.29964 -15.00994 -14.63241 -14.31193 -14.18424 -13.86627 -13.67951 -13.24610 -12.98853 -12.78074 -12.57277 -12.49761 -12.32827 -12.00172 -11.98187 -11.95130 -11.91649 -11.83377 -11.72162 -11.62435 -11.34246 -11.32111 -11.23570 -11.11111 -11.10237 -10.80416 -10.39040 -10.32983 -10.15705 -10.12718 -8.90806 -8.55703 -8.04116 -7.33927 -5.69707 0.77716 1.48771 1.88134 2.57809 2.63179 2.67424 2.68841 2.76831 3.24551 3.33927 3.68420 3.89231 3.95013 4.11815 4.18338 4.35325 4.61113 4.66282 4.66334 4.79791 4.82130 4.95960 5.04730 5.33127 5.35458 5.40283 5.41491 5.57977 5.61032 5.71782 5.76442 5.87643 5.88866 5.97455 6.09206 6.13664 6.17540 6.37897 6.54169 6.76672 6.88741 7.29213 7.36088 7.55138 7.75788 7.83049 8.04564 8.31037 8.76674 8.93003 8.95764 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.003431 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.201224 B = 8159.376868 C = 8965.555576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.113 3.887 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.328 6.328 6 C 0.545 3.455 7 O -0.513 6.513 8 C -0.073 4.073 9 C 0.179 3.821 10 N -0.510 5.510 11 C 0.428 3.572 12 N -0.608 5.608 13 C 0.364 3.636 14 C -0.371 4.371 15 H 0.121 0.879 16 C 0.065 3.935 17 N -0.717 5.717 18 Si 0.924 3.076 19 H -0.254 1.254 20 H -0.266 1.266 21 H -0.242 1.242 22 C -0.298 4.298 23 C 0.323 3.677 24 N -0.522 5.522 25 C 0.304 3.696 26 N -0.522 5.522 27 C 0.009 3.991 28 N -0.359 5.359 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.175 0.825 39 H 0.413 0.587 40 H 0.307 0.693 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 5.671 -14.840 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.077 3.923 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.244 6.244 6 C 0.390 3.610 7 O -0.403 6.403 8 C -0.210 4.210 9 C 0.015 3.985 10 N -0.232 5.232 11 C 0.186 3.814 12 N -0.228 5.228 13 C 0.260 3.740 14 C -0.398 4.398 15 H 0.139 0.861 16 C -0.167 4.167 17 N -0.336 5.336 18 Si 0.745 3.255 19 H -0.178 1.178 20 H -0.190 1.190 21 H -0.165 1.165 22 C -0.316 4.316 23 C 0.014 3.986 24 N -0.203 5.203 25 C -0.004 4.004 26 N -0.204 5.204 27 C -0.167 4.167 28 N -0.074 5.074 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.192 0.808 39 H 0.251 0.749 40 H 0.119 0.881 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.738 5.700 -13.617 14.864 hybrid contribution 0.632 -0.483 -0.889 1.192 sum -1.106 5.217 -14.506 15.455 Atomic orbital electron populations 1.22491 0.94159 1.04759 1.02564 1.22185 0.94357 0.92413 0.83326 1.21828 1.02348 0.92619 1.02860 1.22492 1.01750 1.03171 0.96562 1.86750 1.69085 1.24417 1.44144 1.20383 0.76357 0.80224 0.84034 1.90721 1.36384 1.70402 1.42744 1.20445 1.08576 0.94197 0.97801 1.23318 0.92414 0.89628 0.93095 1.68127 1.15936 1.36181 1.02985 1.19357 0.86948 0.89407 0.85737 1.41264 1.43000 1.18088 1.20477 1.16785 0.86769 0.85424 0.85000 1.20428 0.97686 1.17283 1.04380 0.86145 1.26593 1.01254 0.93901 0.94911 1.69465 1.36200 1.12219 1.15675 0.85902 0.78852 0.81946 0.78822 1.17827 1.18982 1.16508 1.12765 0.93995 1.33844 0.90992 1.24567 0.91570 0.90799 0.91629 1.81094 1.11648 1.17293 1.10289 1.25160 0.91501 0.91171 0.92568 1.81108 1.13313 1.17266 1.08728 1.23551 1.03766 0.91324 0.98040 1.68213 1.04040 1.35759 0.99425 0.91960 0.91269 0.89731 0.91405 0.90590 0.91372 0.89728 0.91268 0.92012 0.80848 0.74875 0.88063 0.79993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 2 C 0.11 1.30 1.13 -90.62 -0.10 1.20 16 3 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 4 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 5 O -0.33 -4.87 9.71 -40.56 -0.39 -5.27 16 6 C 0.55 8.54 7.25 34.60 0.25 8.79 16 7 O -0.51 -7.97 11.87 -19.25 -0.23 -8.20 16 8 C -0.07 -1.22 6.74 -82.89 -0.56 -1.78 16 9 C 0.18 2.84 10.76 -17.00 -0.18 2.66 16 10 N -0.51 -8.85 10.52 -11.91 -0.13 -8.97 16 11 C 0.43 7.61 6.16 -154.85 -0.95 6.66 16 12 N -0.61 -10.81 3.32 -9.61 -0.03 -10.84 16 13 C 0.36 6.69 4.95 -83.52 -0.41 6.28 16 14 C -0.37 -6.65 6.87 -38.33 -0.26 -6.91 16 15 H 0.12 2.16 7.01 -52.49 -0.37 1.79 16 16 C 0.07 1.12 4.79 -17.20 -0.08 1.04 16 17 N -0.72 -12.57 11.01 55.60 0.61 -11.96 16 18 Si 0.92 13.77 29.58 -169.99 -5.03 8.75 16 19 H -0.25 -3.79 7.11 56.52 0.40 -3.39 16 20 H -0.27 -4.03 7.11 56.52 0.40 -3.63 16 21 H -0.24 -3.66 7.11 56.52 0.40 -3.25 16 22 C -0.30 -5.87 5.88 -104.95 -0.62 -6.49 16 23 C 0.32 6.71 13.91 -22.47 -0.31 6.40 16 24 N -0.52 -11.41 18.54 41.83 0.78 -10.63 16 25 C 0.30 6.35 14.81 -22.47 -0.33 6.02 16 26 N -0.52 -11.59 18.54 41.84 0.78 -10.81 16 27 C 0.01 0.16 9.74 -17.11 -0.17 -0.01 16 28 N -0.36 -6.34 10.26 -9.46 -0.10 -6.43 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.08 1.05 5.88 -51.93 -0.31 0.74 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.05 5.88 -51.93 -0.31 0.74 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.17 2.34 7.63 -52.49 -0.40 1.94 16 39 H 0.41 7.27 8.92 -40.82 -0.36 6.90 16 40 H 0.31 5.00 8.29 -40.82 -0.34 4.66 16 41 H 0.18 3.11 6.17 -52.48 -0.32 2.79 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -23.49 370.05 -5.11 -28.60 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.16 Total: 10.53 kcal Atomic # 6 Polarization: 22.45 SS G_CDS: -2.79 Total: 19.67 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 1.91 Total: -59.65 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.62 Total: -13.47 kcal Atomic # 14 Polarization: 13.77 SS G_CDS: -5.03 Total: 8.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -23.49 -5.11 -28.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.858 kcal (2) G-P(sol) polarization free energy of solvation -23.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds