Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46983 * 2 1 4 4 C 1.53004 * 109.47486 * 240.00582 * 2 1 3 5 5 O 1.45199 * 109.47274 * 120.00186 * 2 1 3 6 6 C 1.34725 * 117.00216 * 60.00232 * 5 2 1 7 7 O 1.21479 * 119.99647 * 0.02562 * 6 5 2 8 8 C 1.47711 * 120.00323 * 180.27566 * 6 5 2 9 9 C 1.39520 * 120.01293 * 179.44904 * 8 6 5 10 10 N 1.32000 * 119.97496 * 179.70361 * 9 8 6 11 11 C 1.32794 * 119.99566 * 0.57260 * 10 9 8 12 12 N 1.38560 * 119.99086 * 179.72521 * 11 10 9 13 13 C 1.38436 * 120.00176 * 173.70049 * 12 11 10 14 14 C 1.38941 * 119.99948 * 299.75351 * 13 12 11 15 15 H 1.08001 * 119.99499 * 158.76881 * 14 13 12 16 16 C 1.40867 * 120.00185 * 338.77006 * 14 13 12 17 17 N 1.30312 * 119.99697 * 350.89225 * 16 14 13 18 18 Si 1.86800 * 119.99800 * 170.89032 * 16 14 13 19 19 H 1.48500 * 109.47015 * 89.99994 * 18 16 14 20 20 H 1.48501 * 109.46839 * 210.00072 * 18 16 14 21 21 H 1.48501 * 109.47476 * 329.99883 * 18 16 14 22 22 C 1.41133 * 119.99825 * 119.74951 * 13 12 11 23 23 C 1.43205 * 120.00275 * 185.26523 * 22 13 12 24 24 N 9.34172 * 143.92116 * 155.16346 * 5 1 2 25 25 C 1.43201 * 120.00178 * 5.26991 * 22 13 12 26 26 N 8.82265 * 121.59599 * 179.18079 * 5 1 2 27 27 C 1.39838 * 120.01777 * 359.70604 * 11 10 9 28 28 N 1.31468 * 120.02915 * 359.97438 * 27 11 10 29 29 H 1.08996 * 109.47236 * 299.99823 * 1 2 3 30 30 H 1.09007 * 109.46926 * 60.00216 * 1 2 3 31 31 H 1.09000 * 109.46698 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46765 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47343 * 300.00154 * 3 2 1 34 34 H 1.09004 * 109.46422 * 60.00117 * 3 2 1 35 35 H 1.08999 * 109.46638 * 299.99931 * 4 2 1 36 36 H 1.08993 * 109.47179 * 59.99638 * 4 2 1 37 37 H 1.09000 * 109.47448 * 179.97438 * 4 2 1 38 38 H 1.07996 * 120.00962 * 359.97438 * 9 8 6 39 39 H 0.96997 * 120.00291 * 353.70505 * 12 11 10 40 40 H 0.97006 * 119.99759 * 185.05352 * 17 16 14 41 41 H 1.08006 * 119.98478 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6521 -1.9732 1.3384 7 8 0.9517 -2.5104 0.5038 8 6 2.1023 -2.7313 2.5235 9 6 1.7182 -4.0624 2.6878 10 7 2.1258 -4.7409 3.7441 11 6 2.8918 -4.1530 4.6557 12 7 3.3149 -4.8636 5.7674 13 6 4.2174 -4.2953 6.6500 14 6 5.4762 -3.9110 6.2050 15 1 6.0452 -3.1799 6.7602 16 6 6.0103 -4.4748 5.0297 17 7 5.4094 -5.4798 4.4580 18 14 7.5797 -3.7816 4.2910 19 1 8.7520 -4.4887 4.8663 20 1 7.5600 -3.9726 2.8184 21 1 7.6747 -2.3323 4.6008 22 6 3.8586 -4.1062 8.0018 23 6 4.7469 -3.4170 8.8888 24 7 5.4516 -2.8702 9.5922 25 6 2.6063 -4.6035 8.4867 26 7 1.6129 -4.9981 8.8713 27 6 3.2719 -2.8171 4.4938 28 7 2.8716 -2.1424 3.4388 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6765 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1392 37 1 3.1301 -0.7207 -1.2495 38 1 1.0912 -4.5388 1.9487 39 1 2.9788 -5.7594 5.9273 40 1 5.8149 -5.9151 3.6917 41 1 3.8946 -2.3393 5.2358 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = 10.746385 kcal Electronic energy + Delta-G solvation = -28743.415590 eV Core-core repulsion = 24623.428901 eV Total energy + Delta-G solvation = -4119.986690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.37385 -41.45304 -39.32366 -37.95105 -37.13326 -36.57893 -35.78296 -35.06133 -34.73981 -32.80100 -30.85077 -28.94765 -28.32965 -28.26043 -26.26723 -25.67450 -23.70316 -22.85578 -20.94120 -20.86376 -19.45559 -19.08858 -18.77043 -17.93957 -17.83672 -17.45496 -17.10765 -16.64945 -16.16182 -15.83211 -15.53763 -15.31725 -15.11454 -14.61803 -14.53176 -14.48817 -14.39810 -13.94495 -13.50227 -13.42303 -13.36878 -13.32573 -13.21876 -13.12650 -12.88423 -12.88105 -12.82147 -12.75271 -12.61794 -12.56680 -12.36925 -12.24317 -12.11302 -11.64978 -11.52074 -11.35199 -11.21419 -10.26282 -9.99208 -9.41487 -8.74627 -7.22946 -0.54358 0.13725 0.47336 1.33639 1.41359 1.50292 1.51702 1.58578 1.92513 2.02677 2.05432 2.22355 2.50953 2.53448 2.82079 3.11020 3.33077 3.36933 3.47876 3.76566 3.78786 3.83894 3.88835 3.99823 4.06792 4.50279 4.58729 4.59568 4.61470 4.65064 4.80163 4.82845 4.89570 4.90934 5.05590 5.14933 5.29248 5.30385 5.32505 5.45267 5.47614 5.84357 5.94316 6.15930 6.37782 6.45850 6.79821 6.93563 7.14173 7.31586 7.57761 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.003431 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.201224 B = 8159.376868 C = 8965.555576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.342 6.342 6 C 0.546 3.454 7 O -0.514 6.514 8 C -0.078 4.078 9 C 0.181 3.819 10 N -0.518 5.518 11 C 0.421 3.579 12 N -0.608 5.608 13 C 0.362 3.638 14 C -0.360 4.360 15 H 0.122 0.878 16 C 0.046 3.954 17 N -0.722 5.722 18 Si 0.970 3.030 19 H -0.250 1.250 20 H -0.267 1.267 21 H -0.244 1.244 22 C -0.309 4.309 23 C 0.330 3.670 24 N -0.546 5.546 25 C 0.313 3.687 26 N -0.552 5.552 27 C 0.001 3.999 28 N -0.367 5.367 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.198 0.802 39 H 0.412 0.588 40 H 0.315 0.685 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 6.492 -17.031 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.065 3.935 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.258 6.258 6 C 0.390 3.610 7 O -0.404 6.404 8 C -0.216 4.216 9 C 0.018 3.982 10 N -0.240 5.240 11 C 0.179 3.821 12 N -0.229 5.229 13 C 0.259 3.741 14 C -0.386 4.386 15 H 0.140 0.860 16 C -0.186 4.186 17 N -0.340 5.340 18 Si 0.789 3.211 19 H -0.174 1.174 20 H -0.191 1.191 21 H -0.167 1.167 22 C -0.328 4.328 23 C 0.023 3.977 24 N -0.229 5.229 25 C 0.006 3.994 26 N -0.235 5.235 27 C -0.174 4.174 28 N -0.083 5.083 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.215 0.785 39 H 0.250 0.750 40 H 0.128 0.872 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.257 6.520 -15.807 17.145 hybrid contribution 0.480 -0.716 -0.414 0.956 sum -0.777 5.804 -16.222 17.246 Atomic orbital electron populations 1.22462 0.93568 1.03787 1.03799 1.22626 0.95029 0.93442 0.82448 1.21868 1.02254 0.91001 1.04153 1.22461 1.01616 1.02222 0.97290 1.86732 1.69254 1.23883 1.45908 1.20216 0.76410 0.80681 0.83694 1.90724 1.36370 1.70605 1.42654 1.20752 1.08122 0.94730 0.97955 1.23679 0.92066 0.89478 0.92931 1.68152 1.15979 1.36551 1.03293 1.19403 0.87301 0.89508 0.85890 1.41173 1.43128 1.18034 1.20526 1.16726 0.87098 0.85686 0.84632 1.20629 0.97195 1.16306 1.04499 0.86027 1.27064 1.02948 0.93890 0.94681 1.69465 1.36771 1.12156 1.15627 0.85222 0.76531 0.81280 0.78038 1.17431 1.19082 1.16680 1.12734 0.93663 1.34936 0.91445 1.24678 0.91289 0.90424 0.91310 1.81088 1.12492 1.18482 1.10823 1.25307 0.91465 0.90663 0.91938 1.81099 1.14204 1.18670 1.09506 1.23559 1.04234 0.91349 0.98268 1.68207 1.04384 1.36061 0.99635 0.92194 0.88589 0.91720 0.91600 0.87737 0.91632 0.91719 0.88593 0.92181 0.78549 0.74953 0.87237 0.79913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 8.37 71.98 0.60 -2.87 16 2 C 0.10 2.11 1.13 -10.79 -0.01 2.10 16 3 C -0.14 -2.12 8.85 71.98 0.64 -1.48 16 4 C -0.18 -3.45 8.37 71.98 0.60 -2.84 16 5 O -0.34 -9.82 9.71 -56.35 -0.55 -10.36 16 6 C 0.55 16.63 7.25 70.33 0.51 17.14 16 7 O -0.51 -15.48 11.87 19.91 0.24 -15.24 16 8 C -0.08 -2.55 6.74 41.74 0.28 -2.27 16 9 C 0.18 5.57 10.76 84.98 0.91 6.49 16 10 N -0.52 -17.56 10.52 -191.58 -2.02 -19.57 16 11 C 0.42 14.77 6.16 133.27 0.82 15.59 16 12 N -0.61 -21.46 3.32 -184.33 -0.61 -22.07 16 13 C 0.36 13.21 4.95 38.98 0.19 13.40 16 14 C -0.36 -12.57 6.87 23.08 0.16 -12.41 16 15 H 0.12 4.23 7.01 -2.91 -0.02 4.21 16 16 C 0.05 1.50 4.79 85.56 0.41 1.91 16 17 N -0.72 -24.29 11.01 21.98 0.24 -24.05 16 18 Si 0.97 26.56 29.58 68.60 2.03 28.59 16 19 H -0.25 -6.74 7.11 99.48 0.71 -6.03 16 20 H -0.27 -7.35 7.11 99.48 0.71 -6.65 16 21 H -0.24 -6.75 7.11 99.48 0.71 -6.05 16 22 C -0.31 -12.19 5.88 -20.07 -0.12 -12.31 16 23 C 0.33 13.72 13.91 88.33 1.23 14.95 16 24 N -0.55 -23.85 18.54 19.00 0.35 -23.50 16 25 C 0.31 13.18 14.81 88.33 1.31 14.49 16 26 N -0.55 -24.71 18.54 19.00 0.35 -24.36 16 27 C 0.00 0.03 9.74 85.13 0.83 0.86 16 28 N -0.37 -12.76 10.26 -183.83 -1.89 -14.64 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.20 4.99 7.63 -2.91 -0.02 4.97 16 39 H 0.41 14.49 8.92 -92.71 -0.83 13.66 16 40 H 0.31 9.72 8.29 -92.70 -0.77 8.95 16 41 H 0.18 6.21 6.17 -2.91 -0.02 6.19 16 Total: -1.00 -49.04 370.05 6.82 -42.22 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.30 Total: 30.23 kcal Atomic # 6 Polarization: 44.38 SS G_CDS: 8.37 Total: 52.75 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -3.57 Total: -128.19 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.31 Total: -25.61 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: 2.03 Total: 28.59 kcal Total: -49.04 6.82 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.971 kcal (2) G-P(sol) polarization free energy of solvation -49.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds