Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41603 * 113.99921 * 2 1 4 4 C 1.46501 * 119.99800 * 270.00116 * 3 2 1 5 5 C 1.34774 * 119.99733 * 89.99917 * 3 2 1 6 6 O 1.21564 * 119.99392 * 179.97438 * 5 3 2 7 7 C 1.47860 * 120.00482 * 0.02562 * 5 3 2 8 8 N 1.32866 * 119.63294 * 5.71944 * 7 5 3 9 9 C 1.31302 * 121.71206 * 179.97438 * 8 7 5 10 10 C 1.39490 * 120.77533 * 0.02562 * 9 8 7 11 11 N 1.39185 * 120.40002 * 180.02562 * 10 9 8 12 12 C 1.38353 * 120.00289 * 356.37490 * 11 10 9 13 13 C 1.38978 * 119.99640 * 61.02088 * 12 11 10 14 14 H 1.08005 * 119.99445 * 204.84367 * 13 12 11 15 15 C 1.40844 * 120.00108 * 24.84049 * 13 12 11 16 16 N 1.30326 * 119.99994 * 5.73834 * 15 13 12 17 17 Si 1.86805 * 119.99836 * 185.73551 * 15 13 12 18 18 H 1.48498 * 109.47039 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46949 * 120.00219 * 17 15 13 20 20 H 1.48497 * 109.46985 * 240.00054 * 17 15 13 21 21 C 1.41146 * 119.99948 * 241.01790 * 12 11 10 22 22 C 1.43202 * 119.99880 * 185.14217 * 21 12 11 23 23 N 8.56803 * 69.63905 * 125.68769 * 2 1 3 24 24 C 1.43200 * 120.00480 * 5.14479 * 21 12 11 25 25 N 8.18985 * 64.40032 * 92.76647 * 2 1 3 26 26 C 1.39406 * 119.19668 * 359.97438 * 10 9 8 27 27 C 1.38281 * 118.42878 * 0.02562 * 26 10 9 28 28 C 1.50700 * 120.41797 * 179.97438 * 27 26 10 29 29 H 1.08993 * 109.47421 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46932 * 300.00083 * 1 2 3 31 31 H 1.09007 * 109.47169 * 59.99859 * 1 2 3 32 32 H 1.09004 * 109.47007 * 270.00366 * 4 3 2 33 33 H 1.08997 * 109.47163 * 29.99748 * 4 3 2 34 34 H 1.08994 * 109.46915 * 150.00120 * 4 3 2 35 35 H 1.08005 * 119.61065 * 180.28048 * 9 8 7 36 36 H 0.97001 * 120.00411 * 176.37588 * 11 10 9 37 37 H 0.97007 * 119.99524 * 184.99488 * 16 15 13 38 38 H 1.07998 * 120.78387 * 180.02562 * 26 10 9 39 39 H 1.09002 * 109.46987 * 97.32013 * 28 27 26 40 40 H 1.08999 * 109.47287 * 217.31429 * 28 27 26 41 41 H 1.08999 * 109.47567 * 337.31935 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9628 -1.2688 5 6 2.2790 1.9092 1.1672 6 8 2.7739 3.0195 1.1671 7 6 1.9789 1.2336 2.4477 8 7 1.5461 -0.0226 2.4421 9 6 1.2679 -0.6617 3.5548 10 6 1.4180 -0.0374 4.7932 11 7 1.1213 -0.7225 5.9679 12 6 0.6034 -2.0041 5.9094 13 6 1.3368 -3.0233 5.3136 14 1 0.8302 -3.8849 4.9044 15 6 2.7406 -2.9325 5.2434 16 7 3.3604 -1.9500 5.8342 17 14 3.7140 -4.2204 4.3035 18 1 2.7818 -5.2228 3.7279 19 1 4.4735 -3.5652 3.2084 20 1 4.6604 -4.8966 5.2266 21 6 -0.6695 -2.2765 6.4548 22 6 -1.1590 -3.6217 6.4936 23 7 -1.5521 -4.6860 6.5242 24 6 -1.4717 -1.2077 6.9694 25 7 -2.1096 -0.3565 7.3773 26 6 1.8699 1.2805 4.8400 27 6 2.1531 1.9221 3.6482 28 6 2.6438 3.3470 3.6465 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.3156 1.7107 -1.5835 33 1 1.5939 1.6336 -2.0284 34 1 2.2208 3.0418 -1.1384 35 1 0.9226 -1.6841 3.5110 36 1 1.2775 -0.3014 6.8276 37 1 4.3188 -1.8462 5.7259 38 1 1.9958 1.7885 5.7847 39 1 3.7307 3.3568 3.5657 40 1 2.2116 3.8791 2.7990 41 1 2.3439 3.8357 4.5735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = 81.921769 kcal Electronic energy + Delta-G solvation = -29489.103049 eV Core-core repulsion = 25372.202755 eV Total energy + Delta-G solvation = -4116.900293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46366 -39.12774 -37.44479 -37.08160 -35.42423 -34.82942 -33.89639 -33.32624 -32.63861 -31.55721 -29.14364 -27.68815 -27.32947 -26.77202 -25.72132 -23.47769 -22.48463 -20.96953 -20.37506 -19.03297 -18.25682 -17.45530 -17.19839 -16.45423 -16.20067 -16.01333 -15.62298 -15.31613 -14.76549 -14.46105 -14.10552 -13.91456 -13.55228 -13.41496 -13.02710 -12.84200 -12.76092 -12.69677 -12.55458 -12.47847 -12.36928 -12.31812 -12.05690 -11.82181 -11.76243 -11.72395 -11.68366 -11.62578 -11.15032 -11.02297 -10.87015 -10.37004 -10.27052 -10.16673 -9.66675 -9.03620 -8.97751 -8.82902 -8.33423 -7.86192 -6.93522 -5.61443 1.22720 1.76238 2.02253 2.09390 2.67350 2.75494 2.79488 3.03725 3.34782 3.66504 3.77122 3.92859 4.08694 4.09799 4.26954 4.39628 4.89712 5.00530 5.12540 5.23393 5.28409 5.32652 5.35521 5.37634 5.45377 5.49787 5.56619 5.62442 5.80068 5.91926 5.96684 6.01113 6.08857 6.16623 6.28699 6.45745 6.54385 6.67651 6.84436 6.96279 7.17021 7.48512 7.55284 7.62445 8.00107 8.11187 8.23942 8.51462 8.81809 8.99642 9.07804 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.004270 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.105042 B = 6556.301812 C = 7163.626519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.109 6.109 3 N -0.479 5.479 4 C 0.089 3.911 5 C 0.592 3.408 6 O -0.533 6.533 7 C -0.030 4.030 8 N -0.392 5.392 9 C 0.028 3.972 10 C 0.245 3.755 11 N -0.640 5.640 12 C 0.373 3.627 13 C -0.380 4.380 14 H 0.115 0.885 15 C 0.073 3.927 16 N -0.721 5.721 17 Si 0.921 3.079 18 H -0.246 1.246 19 H -0.258 1.258 20 H -0.263 1.263 21 C -0.299 4.299 22 C 0.324 3.676 23 N -0.526 5.526 24 C 0.306 3.694 25 N -0.528 5.528 26 C -0.184 4.184 27 C -0.021 4.021 28 C -0.112 4.112 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.172 0.828 36 H 0.406 0.594 37 H 0.304 0.696 38 H 0.132 0.868 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.852 5.981 -10.304 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.113 6.113 3 N -0.257 5.257 4 C -0.052 4.052 5 C 0.384 3.616 6 O -0.410 6.410 7 C -0.167 4.167 8 N -0.101 5.101 9 C -0.141 4.141 10 C 0.134 3.866 11 N -0.257 5.257 12 C 0.269 3.731 13 C -0.407 4.407 14 H 0.133 0.867 15 C -0.158 4.158 16 N -0.339 5.339 17 Si 0.742 3.258 18 H -0.168 1.168 19 H -0.182 1.182 20 H -0.187 1.187 21 C -0.317 4.317 22 C 0.015 3.985 23 N -0.207 5.207 24 C -0.001 4.001 25 N -0.210 5.210 26 C -0.214 4.214 27 C -0.025 4.025 28 C -0.169 4.169 29 H 0.123 0.877 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.189 0.811 36 H 0.243 0.757 37 H 0.116 0.884 38 H 0.150 0.850 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.722 5.644 -10.368 12.714 hybrid contribution 0.865 0.041 0.772 1.161 sum 5.587 5.686 -9.595 12.475 Atomic orbital electron populations 1.23188 0.82175 1.03644 1.00081 1.90773 1.19561 1.04452 1.96519 1.49723 1.58807 1.11196 1.05953 1.21824 1.01349 0.97834 0.84173 1.18062 0.77134 0.83787 0.82572 1.90733 1.45716 1.18785 1.85813 1.20075 1.11998 0.92781 0.91847 1.67617 1.05604 1.06794 1.30122 1.22888 1.04386 1.01280 0.85540 1.18886 0.88867 0.90663 0.88151 1.41536 1.64357 1.14069 1.05752 1.16809 0.86536 0.82557 0.87187 1.20373 0.91153 1.03176 1.26041 0.86749 1.26467 0.98560 0.97364 0.93445 1.69430 1.13405 1.25506 1.25554 0.85924 0.79869 0.80198 0.79794 1.16813 1.18247 1.18747 1.12962 0.98703 0.82273 1.37799 1.24604 0.91619 0.91456 0.90796 1.81036 1.10649 1.11998 1.17040 1.25339 0.91856 0.92248 0.90705 1.81224 1.10909 1.11078 1.17825 1.20733 1.08536 0.93919 0.98212 1.20426 0.93646 0.96702 0.91698 1.20980 1.01673 0.91521 1.02703 0.87712 0.92956 0.94329 0.91925 0.90859 0.89751 0.81078 0.75710 0.88400 0.84991 0.90824 0.89047 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.71 101.05 1.08 1.17 16 2 O -0.11 -1.60 9.51 -11.47 -0.11 -1.71 16 3 N -0.48 -6.91 3.36 -68.04 -0.23 -7.13 16 4 C 0.09 0.93 10.82 59.85 0.65 1.57 16 5 C 0.59 9.72 7.68 -12.32 -0.09 9.62 16 6 O -0.53 -8.99 12.88 5.31 0.07 -8.92 16 7 C -0.03 -0.51 6.71 -83.02 -0.56 -1.07 16 8 N -0.39 -6.84 6.79 -9.63 -0.07 -6.91 16 9 C 0.03 0.49 9.67 -17.31 -0.17 0.32 16 10 C 0.25 4.19 5.54 -83.62 -0.46 3.73 16 11 N -0.64 -11.04 3.25 -8.06 -0.03 -11.07 16 12 C 0.37 6.96 5.17 -83.54 -0.43 6.53 16 13 C -0.38 -7.02 6.30 -38.32 -0.24 -7.26 16 14 H 0.11 2.14 7.21 -52.48 -0.38 1.76 16 15 C 0.07 1.28 4.73 -17.21 -0.08 1.20 16 16 N -0.72 -12.71 11.18 55.60 0.62 -12.09 16 17 Si 0.92 14.34 29.57 -169.99 -5.03 9.31 16 18 H -0.25 -3.88 7.11 56.52 0.40 -3.48 16 19 H -0.26 -4.15 7.11 56.52 0.40 -3.75 16 20 H -0.26 -4.11 7.11 56.52 0.40 -3.71 16 21 C -0.30 -6.01 5.88 -104.94 -0.62 -6.63 16 22 C 0.32 6.92 14.01 -22.51 -0.32 6.60 16 23 N -0.53 -11.81 18.53 41.80 0.77 -11.03 16 24 C 0.31 6.45 14.83 -22.37 -0.33 6.12 16 25 N -0.53 -11.74 18.56 41.96 0.78 -10.96 16 26 C -0.18 -2.93 9.68 -39.13 -0.38 -3.31 16 27 C -0.02 -0.33 5.92 -104.14 -0.62 -0.95 16 28 C -0.11 -1.55 8.70 36.01 0.31 -1.24 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.71 7.58 -51.93 -0.39 0.31 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.86 7.42 -51.93 -0.39 0.47 16 35 H 0.17 3.04 5.70 -52.48 -0.30 2.74 16 36 H 0.41 6.67 8.84 -40.82 -0.36 6.31 16 37 H 0.30 4.99 8.29 -40.82 -0.34 4.66 16 38 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.34 5.89 -51.93 -0.31 1.04 16 41 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -24.83 369.04 -4.12 -28.95 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.21 Total: 9.59 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: -2.25 Total: 16.41 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 1.85 Total: -59.19 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.04 Total: -10.63 kcal Atomic # 14 Polarization: 14.34 SS G_CDS: -5.03 Total: 9.31 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -24.83 -4.12 -28.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.870 kcal (2) G-P(sol) polarization free energy of solvation -24.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds