Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.28949 * 32.86811 * 14 13 11 16 16 C 1.54379 * 110.32150 * 270.63602 * 14 13 11 17 17 N 1.48564 * 104.59414 * 217.24850 * 16 14 13 18 18 C 1.46900 * 111.00199 * 159.04166 * 17 16 14 19 19 C 1.52996 * 109.47113 * 174.71150 * 18 17 16 20 20 N 1.46498 * 109.47188 * 179.97438 * 19 18 17 21 21 C 1.34431 * 126.82599 * 124.99017 * 20 19 18 22 22 N 1.30828 * 108.08073 * 179.97438 * 21 20 19 23 23 C 1.33238 * 109.82689 * 0.02562 * 22 21 20 24 24 N 1.30713 * 108.94616 * 359.75323 * 23 22 21 25 25 C 1.48555 * 104.21936 * 39.48179 * 17 16 14 26 26 C 1.54260 * 110.32595 * 154.99492 * 14 13 11 27 27 H 1.09003 * 110.32199 * 0.02562 * 26 14 13 28 28 O 1.42900 * 110.32585 * 237.89455 * 26 14 13 29 29 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 31 31 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 32 32 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 33 33 H 1.08993 * 110.41240 * 336.02733 * 16 14 13 34 34 H 1.08998 * 110.41295 * 98.47461 * 16 14 13 35 35 H 1.09001 * 109.46538 * 294.70613 * 18 17 16 36 36 H 1.08997 * 109.47204 * 54.70748 * 18 17 16 37 37 H 1.09005 * 109.46939 * 299.99718 * 19 18 17 38 38 H 1.08997 * 109.47413 * 59.99727 * 19 18 17 39 39 H 1.08007 * 125.95561 * 359.93980 * 21 20 19 40 40 H 1.08008 * 125.52609 * 179.97438 * 23 22 21 41 41 H 1.09006 * 110.41511 * 201.73650 * 25 17 16 42 42 H 1.09006 * 110.41392 * 79.29700 * 25 17 16 43 43 H 0.96696 * 113.99952 * 180.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.3937 -7.7651 -0.5892 16 6 2.1265 -8.2188 1.4113 17 7 2.5199 -9.6508 1.3675 18 6 2.8586 -10.1450 2.7087 19 6 3.1297 -11.6494 2.6445 20 7 3.4680 -12.1422 3.9820 21 6 2.8671 -13.1437 4.6475 22 7 3.4611 -13.2754 5.8057 23 6 4.4410 -12.3794 5.9155 24 7 4.4878 -11.6654 4.8216 25 6 3.7075 -9.6757 0.4753 26 6 3.3703 -8.6735 -0.6495 27 1 4.2633 -8.1232 -0.9460 28 8 2.8119 -9.3557 -1.7741 29 1 -0.4849 0.8401 0.0004 30 1 3.1244 -3.7267 -0.9039 31 1 3.1244 -3.7361 0.8761 32 1 3.8007 -6.1835 -0.0260 33 1 2.7684 -7.6692 2.0996 34 1 1.0812 -8.1207 1.7043 35 1 3.7485 -9.6306 3.0714 36 1 2.0269 -9.9543 3.3869 37 1 2.2398 -12.1638 2.2817 38 1 3.9614 -11.8401 1.9663 39 1 2.0382 -13.7360 4.2888 40 1 5.0935 -12.2643 6.7685 41 1 3.8527 -10.6745 0.0635 42 1 4.5969 -9.3540 1.0171 43 1 3.4211 -9.9728 -2.2020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191149200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = -6.649779 kcal Electronic energy + Delta-G solvation = -26222.290791 eV Core-core repulsion = 22236.993698 eV Total energy + Delta-G solvation = -3985.297093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.99129 -41.31426 -39.86204 -37.29441 -35.97785 -34.88840 -34.59213 -32.21485 -32.07622 -30.55732 -29.34681 -28.17981 -27.59760 -24.89575 -22.97978 -22.81130 -22.40337 -21.91642 -21.54525 -19.88180 -18.47232 -18.35957 -17.85272 -17.53338 -16.94529 -16.88988 -16.63437 -16.40895 -16.23315 -15.92579 -15.56157 -15.38952 -14.94363 -14.87037 -14.71028 -14.46121 -14.18303 -13.84023 -13.80381 -13.39429 -13.21683 -13.17513 -13.09686 -12.89611 -12.64653 -12.59927 -12.12771 -11.88277 -11.73268 -11.18008 -11.15324 -11.02920 -10.93231 -10.81814 -10.66783 -10.29821 -10.29072 -9.70755 -8.68226 -8.35746 -6.13995 0.67819 1.23228 1.34479 1.41760 1.45102 1.53769 1.55529 2.00769 2.08293 2.26180 2.84437 2.98490 3.14354 3.29154 3.38574 3.53494 3.57250 3.60122 3.82297 3.91749 3.98755 4.05570 4.11453 4.22952 4.27584 4.29059 4.42076 4.48178 4.51324 4.60585 4.71160 4.74645 4.83408 4.86727 5.22763 5.28718 5.40919 5.45176 5.58657 5.71666 5.93331 6.18740 6.39806 6.92473 7.05587 7.11552 7.16927 8.73405 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.001879 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.600926 B =14898.322636 C =15862.527748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.560 6.560 13 N -0.706 5.706 14 C 0.143 3.857 15 H 0.077 0.923 16 C 0.032 3.968 17 N -0.500 5.500 18 C 0.041 3.959 19 C 0.139 3.861 20 N -0.382 5.382 21 C 0.262 3.738 22 N -0.581 5.581 23 C 0.191 3.809 24 N -0.353 5.353 25 C 0.002 3.998 26 C 0.105 3.895 27 H 0.095 0.905 28 O -0.571 6.571 29 H 0.271 0.729 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.418 0.582 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.138 0.862 38 H 0.101 0.899 39 H 0.259 0.741 40 H 0.236 0.764 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.167 -28.407 3.185 31.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.076 5.924 10 C -0.280 4.280 11 C 0.323 3.677 12 O -0.437 6.437 13 N -0.361 5.361 14 C 0.037 3.963 15 H 0.096 0.904 16 C -0.097 4.097 17 N -0.225 5.225 18 C -0.089 4.089 19 C 0.017 3.983 20 N -0.173 5.173 21 C -0.034 4.034 22 N -0.309 5.309 23 C -0.112 4.112 24 N -0.181 5.181 25 C -0.125 4.125 26 C 0.045 3.955 27 H 0.113 0.887 28 O -0.380 6.380 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.256 0.744 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.156 0.844 38 H 0.119 0.881 39 H 0.275 0.725 40 H 0.252 0.748 41 H 0.135 0.865 42 H 0.088 0.912 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 11.502 -28.288 3.172 30.701 hybrid contribution 2.627 1.680 0.234 3.127 sum 14.130 -26.607 3.406 30.318 Atomic orbital electron populations 1.70188 1.07981 1.28607 1.47971 1.26143 0.95977 1.03362 0.93760 0.84947 0.78197 0.75996 0.78799 1.19291 1.20375 1.18149 1.23206 0.95374 0.91940 1.58875 0.89799 1.85622 1.10484 0.99273 1.97058 1.23367 1.03641 0.94022 1.06996 1.20112 0.86230 0.86664 0.74646 1.90710 1.17447 1.85979 1.49598 1.45718 1.10296 1.04213 1.75891 1.21450 0.98786 0.80410 0.95619 0.90439 1.23365 1.01721 0.88633 0.95987 1.65322 1.31188 1.16607 1.09375 1.22375 1.00531 0.95166 0.90796 1.21857 1.04241 0.94391 0.77769 1.50641 1.24196 1.26559 1.15940 1.26931 0.98339 0.90302 0.87790 1.70573 1.12354 1.27631 1.20345 1.26524 0.96750 0.90414 0.97486 1.77979 1.10637 1.24806 1.04716 1.24062 0.92149 1.01946 0.94386 1.22616 0.94393 0.91940 0.86524 0.88749 1.86570 1.45136 1.61226 1.45065 0.92002 0.86967 0.87004 0.74424 0.92582 0.90945 0.93956 0.91189 0.84441 0.88105 0.72515 0.74783 0.86494 0.91243 0.74746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.94 13.22 21.65 0.29 -55.66 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.39 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.55 -30.95 9.50 67.96 0.65 -30.31 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 11 C 0.54 19.37 7.85 87.66 0.69 20.06 16 12 O -0.56 -25.87 15.51 -3.02 -0.05 -25.92 16 13 N -0.71 -16.88 5.06 -438.30 -2.22 -19.10 16 14 C 0.14 3.25 3.22 45.89 0.15 3.40 16 15 H 0.08 2.42 7.40 -2.39 -0.02 2.40 16 16 C 0.03 0.68 6.20 86.45 0.54 1.22 16 17 N -0.50 -7.32 5.37 -881.50 -4.73 -12.05 16 18 C 0.04 0.53 5.02 86.30 0.43 0.97 16 19 C 0.14 1.11 6.60 86.38 0.57 1.68 16 20 N -0.38 -4.93 3.69 -352.06 -1.30 -6.23 16 21 C 0.26 2.93 12.63 180.36 2.28 5.21 16 22 N -0.58 -9.87 11.19 -203.99 -2.28 -12.16 16 23 C 0.19 3.12 13.03 180.77 2.36 5.48 16 24 N -0.35 -6.41 12.57 -61.24 -0.77 -7.18 16 25 C 0.00 0.02 5.48 86.45 0.47 0.50 16 26 C 0.11 1.42 4.18 31.49 0.13 1.55 16 27 H 0.09 0.86 7.67 -2.39 -0.02 0.84 16 28 O -0.57 -8.64 13.27 -148.98 -1.98 -10.61 16 29 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 30 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 31 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.42 6.67 8.36 -92.71 -0.77 5.89 16 33 H 0.06 1.16 7.91 -2.39 -0.02 1.14 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 0.67 7.88 -2.39 -0.02 0.65 16 36 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 37 H 0.14 0.44 8.09 -2.38 -0.02 0.42 16 38 H 0.10 0.59 7.25 -2.39 -0.02 0.57 16 39 H 0.26 0.30 8.06 -2.91 -0.02 0.27 16 40 H 0.24 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.12 0.56 7.70 -2.38 -0.02 0.54 16 42 H 0.07 0.55 7.82 -2.38 -0.02 0.53 16 43 H 0.40 1.74 9.12 -74.06 -0.68 1.07 16 Total: -1.00 -88.30 380.68 -3.41 -91.71 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.39 Total: 14.95 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 9.16 Total: 6.38 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -11.02 Total: -112.38 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -2.02 Total: -36.53 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -88.30 -3.41 -91.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191149200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.061 kcal (2) G-P(sol) polarization free energy of solvation -88.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds