Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30823 * 125.96477 * 2 1 4 4 C 1.33239 * 109.83132 * 179.86544 * 3 2 1 5 5 C 1.50707 * 125.52868 * 180.12910 * 4 3 2 6 6 N 1.46903 * 109.47045 * 270.29624 * 5 4 3 7 7 C 1.48534 * 110.99626 * 52.60515 * 6 5 4 8 8 C 1.54937 * 103.22475 * 159.72297 * 7 6 5 9 9 H 1.09001 * 110.72924 * 80.94254 * 8 7 6 10 10 O 1.42905 * 110.87634 * 204.15630 * 8 7 6 11 11 C 1.54600 * 102.91890 * 322.58159 * 8 7 6 12 12 H 1.09002 * 110.30788 * 263.04325 * 11 8 7 13 13 N 1.46503 * 110.30891 * 140.87345 * 11 8 7 14 14 C 1.34776 * 119.99741 * 157.82573 * 13 11 8 15 15 O 1.21281 * 120.00318 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99647 * 180.02562 * 14 13 11 17 17 S 1.81008 * 109.47114 * 180.02562 * 16 14 13 18 18 C 1.76195 * 99.99803 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00810 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99613 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46932 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47060 * 120.00550 * 22 20 18 25 25 H 1.48499 * 109.46987 * 240.00093 * 22 20 18 26 26 C 1.47898 * 110.99743 * 170.00016 * 6 5 4 27 27 N 1.30713 * 108.94688 * 0.40381 * 4 3 2 28 28 N 1.34432 * 125.95558 * 180.31384 * 2 1 3 29 29 H 0.96997 * 126.82899 * 359.93425 * 28 2 1 30 30 H 1.08999 * 109.46995 * 269.71347 * 1 2 3 31 31 H 1.08994 * 109.46790 * 29.71034 * 1 2 3 32 32 H 1.08997 * 109.47305 * 149.71475 * 1 2 3 33 33 H 1.09001 * 109.46991 * 30.29522 * 5 4 3 34 34 H 1.09001 * 109.46886 * 150.30041 * 5 4 3 35 35 H 1.09008 * 110.66656 * 278.14818 * 7 6 5 36 36 H 1.08993 * 110.67231 * 41.28464 * 7 6 5 37 37 H 0.96698 * 113.99342 * 293.58341 * 10 8 7 38 38 H 0.97003 * 119.99841 * 337.83657 * 13 11 8 39 39 H 1.09003 * 109.47345 * 300.00178 * 16 14 13 40 40 H 1.09000 * 109.47320 * 60.00381 * 16 14 13 41 41 H 0.96994 * 120.00446 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.91718 * 333.50763 * 26 6 5 43 43 H 1.08996 * 109.92049 * 94.60760 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6886 0.0029 5 6 4.7374 1.6235 0.0067 6 7 5.1205 1.9339 -1.3771 7 6 3.9529 2.4193 -2.1565 8 6 4.6066 3.1691 -3.3443 9 1 4.9184 2.4680 -4.1185 10 8 3.7151 4.1485 -3.8810 11 6 5.8343 3.8458 -2.6924 12 1 5.6040 4.8795 -2.4344 13 7 6.9854 3.7907 -3.5970 14 6 7.9963 4.6708 -3.4556 15 8 7.9533 5.5081 -2.5793 16 6 9.1800 4.6145 -4.3866 17 16 10.3584 5.9151 -3.9435 18 6 11.6042 5.6248 -5.1553 19 1 11.4842 4.8266 -5.8728 20 6 12.7394 6.4228 -5.1883 21 7 12.8856 7.3960 -4.3142 22 14 14.0606 6.1147 -6.4725 23 1 13.6604 4.9699 -7.3296 24 1 14.2272 7.3280 -7.3122 25 1 15.3448 5.8008 -5.7961 26 6 6.1159 3.0270 -1.4189 27 7 3.6195 -0.6169 -0.0038 28 7 2.2964 -1.0882 -0.0060 29 1 2.0093 -2.0147 -0.0101 30 1 -0.3633 -0.0051 1.0276 31 1 -0.3633 0.8925 -0.5093 32 1 -0.3634 -0.8874 -0.5182 33 1 4.4706 2.5444 0.5251 34 1 5.5748 1.1482 0.5176 35 1 3.3535 1.5817 -2.5134 36 1 3.3472 3.1000 -1.5584 37 1 2.9282 3.7756 -4.3014 38 1 7.0198 3.1209 -4.2978 39 1 9.6639 3.6416 -4.3006 40 1 8.8429 4.7633 -5.4124 41 1 13.6787 7.9539 -4.3375 42 1 6.0085 3.6608 -0.5387 43 1 7.1227 2.6112 -1.4563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191162322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = 14.727240 kcal Electronic energy + Delta-G solvation = -26496.169949 eV Core-core repulsion = 22511.799834 eV Total energy + Delta-G solvation = -3984.370115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.60517 -40.11445 -38.46132 -36.40267 -34.52269 -33.35642 -32.80377 -32.39604 -30.75931 -29.29654 -28.52856 -27.85625 -25.98848 -25.40288 -22.54287 -21.55241 -21.17821 -20.60695 -20.15446 -18.36975 -17.89334 -17.68424 -16.88710 -16.23876 -16.04947 -15.51286 -15.25517 -15.03836 -14.77484 -14.70815 -14.37413 -14.09671 -13.79774 -13.59455 -13.43048 -13.24736 -13.08467 -12.84181 -12.69597 -12.49235 -12.30620 -12.08933 -11.91432 -11.69644 -11.04479 -10.99200 -10.94521 -10.72862 -10.54065 -10.47735 -10.36228 -9.94416 -9.77188 -9.36389 -9.04979 -8.93949 -8.76313 -8.19314 -6.46063 -6.18647 -3.88669 1.13226 2.16517 2.34512 3.02509 3.10898 3.24061 3.30084 3.34683 3.41264 3.57614 3.71933 4.05163 4.07807 4.23390 4.28354 4.46123 4.50210 4.74016 4.80341 4.86649 5.10242 5.13226 5.16555 5.17091 5.20530 5.23555 5.26754 5.49214 5.55137 5.63050 5.78617 5.80601 5.88906 5.94148 5.95858 6.18830 6.43716 6.53637 6.58713 6.65271 7.35888 7.63196 7.66028 7.72740 8.38738 8.63942 9.26863 10.88843 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.001855 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.629381 B =15086.778151 C =15385.795339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.536 5.536 4 C 0.235 3.765 5 C 0.138 3.862 6 N -0.505 5.505 7 C 0.013 3.987 8 C 0.094 3.906 9 H 0.076 0.924 10 O -0.553 6.553 11 C 0.148 3.852 12 H 0.107 0.893 13 N -0.728 5.728 14 C 0.535 3.465 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.029 3.971 27 N -0.295 5.295 28 N -0.484 5.484 29 H 0.440 0.560 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.380 0.620 38 H 0.399 0.601 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.063 0.937 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.872 -18.831 6.673 34.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.266 5.266 4 C -0.048 4.048 5 C 0.007 3.993 6 N -0.232 5.232 7 C -0.116 4.116 8 C 0.034 3.966 9 H 0.094 0.906 10 O -0.358 6.358 11 C 0.042 3.958 12 H 0.125 0.875 13 N -0.382 5.382 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.100 4.100 27 N -0.124 5.124 28 N -0.203 5.203 29 H 0.285 0.715 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.227 0.773 38 H 0.234 0.766 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -26.558 -17.345 8.222 32.769 hybrid contribution -0.234 -1.985 -1.964 2.802 sum -26.792 -19.330 6.258 33.625 Atomic orbital electron populations 1.20406 0.83579 1.05099 1.04638 1.24418 0.96648 0.82863 0.95834 1.70394 1.01347 1.29534 1.25286 1.23981 0.92904 0.90112 0.97825 1.20564 0.91826 0.95731 0.91141 1.64885 1.09612 1.38126 1.10556 1.23822 0.93460 0.98909 0.95366 1.22914 0.89793 0.89429 0.94486 0.90623 1.86589 1.36468 1.34758 1.77966 1.21523 0.84197 1.01282 0.88841 0.87468 1.46019 1.20149 1.36325 1.35726 1.20329 0.82928 0.79942 0.84711 1.90704 1.78481 1.35748 1.33979 1.23532 0.98435 1.07087 1.01310 1.85395 1.15717 1.37448 1.44742 1.22917 1.06232 1.20630 1.18501 0.90868 1.24994 0.97709 0.94495 0.96417 1.70027 1.28124 1.17836 1.34315 0.86118 0.80601 0.78269 0.80511 1.19628 1.20589 1.20591 1.23406 0.97501 0.91354 0.97730 1.78095 0.96274 1.12403 1.25655 1.48054 1.04436 1.10092 1.57722 0.71454 0.88933 0.88249 0.89848 0.91138 0.87764 0.90376 0.91301 0.77284 0.76631 0.89118 0.89187 0.92260 0.91871 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.16 10.51 36.01 0.38 0.22 16 2 C 0.28 1.89 8.24 -155.70 -1.28 0.60 16 3 N -0.54 -5.26 10.84 -8.16 -0.09 -5.35 16 4 C 0.23 2.49 6.49 -156.85 -1.02 1.48 16 5 C 0.14 1.38 5.66 -4.97 -0.03 1.35 16 6 N -0.51 -5.39 5.39 -231.89 -1.25 -6.64 16 7 C 0.01 0.13 5.04 -1.90 -0.01 0.12 16 8 C 0.09 0.96 4.14 -24.87 -0.10 0.86 16 9 H 0.08 0.69 7.74 -51.93 -0.40 0.29 16 10 O -0.55 -5.74 13.41 -35.23 -0.47 -6.21 16 11 C 0.15 1.92 3.06 -66.57 -0.20 1.72 16 12 H 0.11 1.68 7.58 -51.93 -0.39 1.28 16 13 N -0.73 -10.23 5.03 -52.49 -0.26 -10.49 16 14 C 0.53 10.15 7.84 -10.99 -0.09 10.06 16 15 O -0.52 -11.79 15.56 5.56 0.09 -11.71 16 16 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.53 -15.39 9.50 30.94 0.29 -15.09 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 22 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.03 0.34 6.48 -2.76 -0.02 0.33 16 27 N -0.30 -3.13 12.80 32.42 0.41 -2.71 16 28 N -0.48 -3.27 7.45 32.62 0.24 -3.03 16 29 H 0.44 1.35 8.96 -182.33 -1.63 -0.28 16 30 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.07 0.67 7.81 -51.93 -0.41 0.27 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.77 7.90 -51.92 -0.41 0.36 16 36 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 37 H 0.38 2.14 9.12 45.56 0.42 2.56 16 38 H 0.40 4.52 8.35 -40.82 -0.34 4.18 16 39 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.06 0.74 7.57 -51.93 -0.39 0.35 16 43 H 0.10 1.24 7.93 -51.93 -0.41 0.82 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -38.94 379.67 -10.53 -49.47 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.47 Total: 3.11 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.95 Total: 0.74 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.21 Total: -53.88 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.39 Total: -17.92 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.94 -10.53 -49.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191162322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.196 kcal (2) G-P(sol) polarization free energy of solvation -38.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds