Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30823 * 125.96477 * 2 1 4 4 C 1.33239 * 109.83132 * 179.86544 * 3 2 1 5 5 C 1.50707 * 125.52868 * 180.12910 * 4 3 2 6 6 N 1.46903 * 109.47045 * 270.29624 * 5 4 3 7 7 C 1.48534 * 110.99626 * 52.60515 * 6 5 4 8 8 C 1.54937 * 103.22475 * 159.72297 * 7 6 5 9 9 H 1.09001 * 110.72924 * 80.94254 * 8 7 6 10 10 O 1.42905 * 110.87634 * 204.15630 * 8 7 6 11 11 C 1.54600 * 102.91890 * 322.58159 * 8 7 6 12 12 H 1.09002 * 110.30788 * 263.04325 * 11 8 7 13 13 N 1.46503 * 110.30891 * 140.87345 * 11 8 7 14 14 C 1.34776 * 119.99741 * 157.82573 * 13 11 8 15 15 O 1.21281 * 120.00318 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99647 * 180.02562 * 14 13 11 17 17 S 1.81008 * 109.47114 * 180.02562 * 16 14 13 18 18 C 1.76195 * 99.99803 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00810 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99613 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46932 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47060 * 120.00550 * 22 20 18 25 25 H 1.48499 * 109.46987 * 240.00093 * 22 20 18 26 26 C 1.47898 * 110.99743 * 170.00016 * 6 5 4 27 27 N 1.30713 * 108.94688 * 0.40381 * 4 3 2 28 28 N 1.34432 * 125.95558 * 180.31384 * 2 1 3 29 29 H 0.96997 * 126.82899 * 359.93425 * 28 2 1 30 30 H 1.08999 * 109.46995 * 269.71347 * 1 2 3 31 31 H 1.08994 * 109.46790 * 29.71034 * 1 2 3 32 32 H 1.08997 * 109.47305 * 149.71475 * 1 2 3 33 33 H 1.09001 * 109.46991 * 30.29522 * 5 4 3 34 34 H 1.09001 * 109.46886 * 150.30041 * 5 4 3 35 35 H 1.09008 * 110.66656 * 278.14818 * 7 6 5 36 36 H 1.08993 * 110.67231 * 41.28464 * 7 6 5 37 37 H 0.96698 * 113.99342 * 293.58341 * 10 8 7 38 38 H 0.97003 * 119.99841 * 337.83657 * 13 11 8 39 39 H 1.09003 * 109.47345 * 300.00178 * 16 14 13 40 40 H 1.09000 * 109.47320 * 60.00381 * 16 14 13 41 41 H 0.96994 * 120.00446 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.91718 * 333.50763 * 26 6 5 43 43 H 1.08996 * 109.92049 * 94.60760 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6886 0.0029 5 6 4.7374 1.6235 0.0067 6 7 5.1205 1.9339 -1.3771 7 6 3.9529 2.4193 -2.1565 8 6 4.6066 3.1691 -3.3443 9 1 4.9184 2.4680 -4.1185 10 8 3.7151 4.1485 -3.8810 11 6 5.8343 3.8458 -2.6924 12 1 5.6040 4.8795 -2.4344 13 7 6.9854 3.7907 -3.5970 14 6 7.9963 4.6708 -3.4556 15 8 7.9533 5.5081 -2.5793 16 6 9.1800 4.6145 -4.3866 17 16 10.3584 5.9151 -3.9435 18 6 11.6042 5.6248 -5.1553 19 1 11.4842 4.8266 -5.8728 20 6 12.7394 6.4228 -5.1883 21 7 12.8856 7.3960 -4.3142 22 14 14.0606 6.1147 -6.4725 23 1 13.6604 4.9699 -7.3296 24 1 14.2272 7.3280 -7.3122 25 1 15.3448 5.8008 -5.7961 26 6 6.1159 3.0270 -1.4189 27 7 3.6195 -0.6169 -0.0038 28 7 2.2964 -1.0882 -0.0060 29 1 2.0093 -2.0147 -0.0101 30 1 -0.3633 -0.0051 1.0276 31 1 -0.3633 0.8925 -0.5093 32 1 -0.3634 -0.8874 -0.5182 33 1 4.4706 2.5444 0.5251 34 1 5.5748 1.1482 0.5176 35 1 3.3535 1.5817 -2.5134 36 1 3.3472 3.1000 -1.5584 37 1 2.9282 3.7756 -4.3014 38 1 7.0198 3.1209 -4.2978 39 1 9.6639 3.6416 -4.3006 40 1 8.8429 4.7633 -5.4124 41 1 13.6787 7.9539 -4.3375 42 1 6.0085 3.6608 -0.5387 43 1 7.1227 2.6112 -1.4563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191162322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -19.545686 kcal Electronic energy + Delta-G solvation = -26497.656135 eV Core-core repulsion = 22511.799834 eV Total energy + Delta-G solvation = -3985.856301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.21716 -41.24508 -39.75090 -37.20802 -35.68507 -34.57232 -34.10787 -33.37572 -31.87932 -30.44175 -29.15625 -28.80528 -27.66250 -26.81289 -23.34062 -22.40949 -22.05691 -21.58100 -21.20341 -19.83827 -18.98360 -18.62058 -17.95505 -17.63351 -16.90767 -16.86629 -16.59451 -16.18809 -16.00011 -15.91740 -15.62116 -15.04714 -14.75171 -14.69391 -14.44254 -14.18833 -13.99277 -13.67506 -13.64122 -13.59523 -13.22779 -13.14546 -13.03533 -12.90313 -12.82896 -12.66011 -12.58091 -11.87609 -11.68608 -11.25584 -11.17700 -11.14721 -11.10583 -10.89417 -10.57409 -10.25751 -10.22267 -9.64688 -8.65015 -8.33594 -6.11291 0.54305 1.27056 1.42283 1.47163 1.58231 1.58645 1.67355 1.71477 2.18896 2.28616 2.69442 2.92811 3.00593 3.21599 3.31709 3.42586 3.57036 3.64980 3.87198 3.97532 4.00761 4.16867 4.28071 4.32324 4.34315 4.41821 4.52486 4.59900 4.69205 4.70851 4.72061 4.81479 4.84677 5.06055 5.22768 5.28656 5.41276 5.43667 5.57682 5.68836 6.19290 6.21426 6.46079 6.80147 7.05042 7.07859 7.21536 8.75897 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.001855 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.629381 B =15086.778151 C =15385.795339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.288 3.712 3 N -0.566 5.566 4 C 0.225 3.775 5 C 0.137 3.863 6 N -0.504 5.504 7 C 0.027 3.973 8 C 0.107 3.893 9 H 0.096 0.904 10 O -0.571 6.571 11 C 0.143 3.857 12 H 0.079 0.921 13 N -0.702 5.702 14 C 0.538 3.462 15 O -0.561 6.561 16 C -0.129 4.129 17 S -0.150 6.150 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.036 3.964 27 N -0.327 5.327 28 N -0.475 5.475 29 H 0.455 0.545 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.401 0.599 38 H 0.417 0.583 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.059 0.941 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.515 -21.371 5.075 36.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.010 3.990 3 N -0.297 5.297 4 C -0.059 4.059 5 C 0.007 3.993 6 N -0.231 5.231 7 C -0.102 4.102 8 C 0.047 3.953 9 H 0.114 0.886 10 O -0.379 6.379 11 C 0.037 3.963 12 H 0.097 0.903 13 N -0.357 5.357 14 C 0.324 3.676 15 O -0.439 6.439 16 C -0.280 4.280 17 S 0.078 5.922 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.093 4.093 27 N -0.158 5.158 28 N -0.195 5.195 29 H 0.304 0.696 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.252 0.748 38 H 0.255 0.745 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.273 -19.965 6.598 35.235 hybrid contribution 0.067 -1.288 -1.419 1.918 sum -28.205 -21.253 5.180 35.694 Atomic orbital electron populations 1.20644 0.80197 1.06559 1.06011 1.25227 0.98182 0.81998 0.93571 1.70390 1.01327 1.31149 1.26841 1.23950 0.93314 0.90189 0.98402 1.20548 0.92182 0.95890 0.90678 1.64885 1.09764 1.37200 1.11211 1.23697 0.92935 0.98701 0.94825 1.22790 0.88552 0.89028 0.94954 0.88622 1.86544 1.37618 1.35459 1.78256 1.21593 0.84873 1.00330 0.89526 0.90290 1.45728 1.19003 1.35099 1.35821 1.20084 0.83427 0.80203 0.83893 1.90696 1.79436 1.37943 1.35816 1.23367 0.97228 1.04965 1.02448 1.85579 1.18663 1.41795 1.46202 1.23248 1.06562 1.20996 1.18538 0.89876 1.26132 1.00346 0.93970 0.98746 1.70189 1.29107 1.19054 1.36452 0.84899 0.76946 0.78654 0.77397 1.18027 1.19945 1.19940 1.23229 0.97544 0.91487 0.97056 1.77985 0.98553 1.12535 1.26696 1.47982 1.03288 1.11099 1.57145 0.69602 0.87440 0.88136 0.86973 0.91147 0.87594 0.89722 0.92203 0.74760 0.74543 0.86966 0.87237 0.92008 0.92300 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.09 10.51 71.24 0.75 0.66 16 2 C 0.29 3.32 8.24 138.23 1.14 4.46 16 3 N -0.57 -10.56 10.84 -179.72 -1.95 -12.50 16 4 C 0.22 4.65 6.49 138.63 0.90 5.55 16 5 C 0.14 2.75 5.66 85.56 0.48 3.23 16 6 N -0.50 -10.44 5.39 -887.56 -4.78 -15.22 16 7 C 0.03 0.50 5.04 86.65 0.44 0.94 16 8 C 0.11 2.00 4.14 31.80 0.13 2.13 16 9 H 0.10 1.45 7.74 -2.39 -0.02 1.43 16 10 O -0.57 -10.85 13.41 -148.98 -2.00 -12.85 16 11 C 0.14 3.66 3.06 45.87 0.14 3.80 16 12 H 0.08 2.54 7.58 -2.39 -0.02 2.52 16 13 N -0.70 -18.95 5.03 -438.36 -2.21 -21.15 16 14 C 0.54 20.38 7.84 87.66 0.69 21.07 16 15 O -0.56 -26.52 15.56 -3.03 -0.05 -26.56 16 16 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 17 S -0.15 -8.41 20.57 -56.49 -1.16 -9.58 16 18 C -0.55 -31.49 9.50 67.96 0.65 -30.84 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.73 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 22 Si 1.00 44.09 29.55 68.60 2.03 46.11 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 C 0.04 0.86 6.48 86.45 0.56 1.42 16 27 N -0.33 -6.67 12.80 -51.33 -0.66 -7.33 16 28 N -0.47 -5.61 7.45 -50.70 -0.38 -5.99 16 29 H 0.46 1.87 8.96 -213.10 -1.91 -0.04 16 30 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.07 1.38 7.81 -2.39 -0.02 1.36 16 34 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 1.50 7.90 -2.38 -0.02 1.48 16 36 H 0.06 1.24 8.02 -2.39 -0.02 1.22 16 37 H 0.40 3.57 9.12 -74.06 -0.68 2.90 16 38 H 0.42 8.38 8.35 -92.71 -0.77 7.61 16 39 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 40 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.06 1.45 7.57 -2.39 -0.02 1.43 16 43 H 0.09 2.25 7.93 -2.39 -0.02 2.23 16 Total: -1.00 -87.17 379.67 -6.37 -93.53 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -2.28 Total: 18.96 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.78 Total: 8.84 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -9.68 Total: -118.46 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -2.04 Total: -39.41 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.58 kcal Total: -87.17 -6.37 -93.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191162322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.989 kcal (2) G-P(sol) polarization free energy of solvation -87.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds