Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 119.99651 * 2 1 4 4 H 1.48507 * 109.47040 * 239.99744 * 3 2 1 5 5 H 1.48498 * 109.47516 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47501 * 119.99745 * 3 2 1 7 7 C 1.38946 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00110 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00426 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99686 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00291 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47249 * 179.97438 * 12 10 9 14 14 C 1.47846 * 110.99775 * 49.15321 * 13 12 10 15 15 C 1.55112 * 104.90379 * 146.24018 * 14 13 12 16 16 H 1.09003 * 110.92371 * 81.17046 * 15 14 13 17 17 O 1.42899 * 111.14844 * 205.05066 * 15 14 13 18 18 C 1.55142 * 101.56325 * 323.16003 * 15 14 13 19 19 H 1.09004 * 110.70726 * 276.96865 * 18 15 14 20 20 N 1.46499 * 110.70850 * 153.90445 * 18 15 14 21 21 C 1.34777 * 119.99665 * 157.68368 * 20 18 15 22 22 O 1.21573 * 120.00276 * 359.72080 * 21 20 18 23 23 C 1.47622 * 119.99785 * 179.72386 * 21 20 18 24 24 N 1.31869 * 126.45662 * 0.02562 * 23 21 20 25 25 N 1.28468 * 110.15264 * 180.02562 * 24 23 21 26 26 H 0.97001 * 124.93522 * 179.97438 * 25 24 23 27 27 C 1.35731 * 110.13553 * 359.97438 * 25 24 23 28 28 C 1.35545 * 107.11225 * 359.73171 * 27 25 24 29 29 F 1.35100 * 127.24034 * 180.25427 * 28 27 25 30 30 C 1.47444 * 111.00220 * 169.99610 * 13 12 10 31 31 H 0.97001 * 120.00381 * 0.02562 * 1 2 3 32 32 H 0.97007 * 120.00087 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47673 * 59.99822 * 12 10 9 34 34 H 1.09004 * 109.46928 * 299.99553 * 12 10 9 35 35 H 1.08995 * 110.37506 * 265.19729 * 14 13 12 36 36 H 1.09007 * 110.37357 * 27.42989 * 14 13 12 37 37 H 0.96702 * 114.00208 * 292.23947 * 17 15 14 38 38 H 0.97001 * 119.99790 * 337.40081 * 20 18 15 39 39 H 1.07997 * 126.44082 * 180.02562 * 27 25 24 40 40 H 1.08999 * 109.88834 * 117.33588 * 30 13 12 41 41 H 1.08999 * 110.01963 * 356.22473 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2440 -4.8628 0.0011 13 7 2.1986 -5.9794 0.0004 14 6 3.2299 -5.7954 1.0437 15 6 3.5634 -7.2293 1.5322 16 1 4.2633 -7.7185 0.8546 17 8 4.0728 -7.2137 2.8672 18 6 2.1698 -7.9087 1.4771 19 1 1.5973 -7.6875 2.3779 20 7 2.3058 -9.3559 1.2944 21 6 1.3027 -10.1784 1.6600 22 8 0.2871 -9.7199 2.1461 23 6 1.4372 -11.6362 1.4703 24 7 2.4761 -12.2673 0.9591 25 7 2.2593 -13.5334 0.9397 26 1 2.8821 -14.1985 0.6070 27 6 1.0323 -13.8052 1.4523 28 6 0.4777 -12.6209 1.8087 29 9 -0.7368 -12.4217 2.3660 30 6 1.5119 -7.2620 0.2400 31 1 -0.4851 0.8400 -0.0004 32 1 0.3534 -2.3907 0.0005 33 1 0.6169 -4.9209 -0.8886 34 1 0.6177 -4.9204 0.8914 35 1 4.1161 -5.3214 0.6219 36 1 2.8356 -5.1979 1.8658 37 1 4.9423 -6.7989 2.9517 38 1 3.1161 -9.7217 0.9065 39 1 0.5844 -14.7819 1.5607 40 1 1.6301 -7.9133 -0.6259 41 1 0.4530 -7.0882 0.4314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195932633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -99.586230 kcal Electronic energy + Delta-G solvation = -29084.611696 eV Core-core repulsion = 24529.071401 eV Total energy + Delta-G solvation = -4555.540296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.72200 -43.73217 -41.38579 -40.35947 -39.24484 -36.95071 -36.02285 -35.46417 -33.33682 -33.07757 -31.69957 -31.24249 -29.26133 -28.12112 -26.22387 -25.14919 -22.98648 -22.73101 -22.02062 -21.47690 -21.05256 -19.94388 -19.86051 -18.71923 -18.30047 -17.89264 -17.48616 -17.40247 -16.96399 -16.72124 -16.26521 -16.26387 -16.07404 -15.93888 -15.77509 -15.51265 -15.34882 -15.06404 -14.45918 -14.34466 -14.13394 -13.76589 -13.62869 -13.49731 -13.35189 -13.12105 -12.96799 -12.60690 -12.43626 -12.20539 -12.12988 -11.80034 -11.53523 -11.49668 -11.08078 -10.74609 -10.40923 -10.18247 -10.04407 -10.01921 -9.32888 -8.46826 -5.95979 0.23837 0.78846 1.39640 1.41654 1.52878 1.63203 1.94074 2.01788 2.07408 2.27750 2.61339 2.96612 3.08784 3.19463 3.24421 3.51272 3.53780 3.73576 3.83135 3.91982 3.96268 4.19496 4.24145 4.27945 4.39413 4.42390 4.49240 4.61351 4.79989 4.84039 5.09122 5.15896 5.27182 5.40370 5.73859 5.86599 5.89154 6.02537 6.28331 6.57997 6.59313 6.75319 6.99360 7.10783 7.53213 8.07348 8.70369 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.002030 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.527335 B =13786.809736 C =14330.243776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.016 4.016 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.083 0.917 9 N -0.572 5.572 10 C 0.440 3.560 11 O -0.611 6.611 12 C 0.047 3.953 13 N -0.508 5.508 14 C 0.037 3.963 15 C 0.100 3.900 16 H 0.105 0.895 17 O -0.569 6.569 18 C 0.137 3.863 19 H 0.081 0.919 20 N -0.685 5.685 21 C 0.599 3.401 22 O -0.566 6.566 23 C -0.058 4.058 24 N -0.231 5.231 25 N -0.340 5.340 26 H 0.479 0.521 27 C 0.008 3.992 28 C -0.010 4.010 29 F -0.121 7.121 30 C 0.038 3.962 31 H 0.278 0.722 32 H 0.395 0.605 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.028 0.972 37 H 0.401 0.599 38 H 0.420 0.580 39 H 0.248 0.752 40 H 0.101 0.899 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 -31.309 0.999 31.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.215 4.215 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.101 0.899 9 N -0.209 5.209 10 C 0.227 3.773 11 O -0.497 6.497 12 C -0.085 4.085 13 N -0.234 5.234 14 C -0.091 4.091 15 C 0.039 3.961 16 H 0.123 0.877 17 O -0.377 6.377 18 C 0.031 3.969 19 H 0.099 0.901 20 N -0.337 5.337 21 C 0.385 3.615 22 O -0.442 6.442 23 C -0.218 4.218 24 N -0.070 5.070 25 N -0.060 5.060 26 H 0.331 0.669 27 C -0.138 4.138 28 C -0.040 4.040 29 F -0.100 7.100 30 C -0.091 4.091 31 H 0.087 0.913 32 H 0.229 0.771 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.047 0.953 37 H 0.252 0.748 38 H 0.258 0.742 39 H 0.265 0.735 40 H 0.119 0.881 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.647 -30.889 0.569 31.406 hybrid contribution -0.756 1.047 0.863 1.554 sum 4.891 -29.842 1.432 30.274 Atomic orbital electron populations 1.69677 1.06950 1.29403 1.50178 1.26099 0.96559 1.02606 0.96261 0.84953 0.77704 0.76450 0.79015 1.19524 1.19678 1.19621 1.19649 0.92793 0.83773 1.49930 0.89895 1.41928 1.09338 1.04758 1.64842 1.20558 0.88334 0.85783 0.82577 1.90455 1.15139 1.87567 1.56568 1.22103 0.94325 0.88638 1.03392 1.63436 1.12247 1.00825 1.46859 1.23568 0.97257 0.95921 0.92379 1.23179 0.94174 0.94075 0.84655 0.87710 1.86448 1.41089 1.83302 1.26904 1.21978 0.96527 0.79746 0.98696 0.90117 1.45486 1.19644 1.05426 1.63164 1.17101 0.82976 0.84217 0.77253 1.90840 1.30686 1.76849 1.45857 1.21850 0.94666 0.94474 1.10812 1.73568 1.22576 0.92951 1.17903 1.43241 1.14347 1.05066 1.43367 0.66913 1.23321 0.87819 1.00477 1.02146 1.17692 0.84595 0.93885 1.07782 1.91490 1.39708 1.95518 1.83238 1.23294 0.97742 0.90655 0.97440 0.91303 0.77116 0.86915 0.91834 0.89182 0.95322 0.74790 0.74162 0.73549 0.88067 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.59 13.05 21.66 0.28 -50.31 16 2 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 1.00 43.21 29.55 68.60 2.03 45.23 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 8 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.57 -29.84 5.29 -306.99 -1.62 -31.47 16 10 C 0.44 21.15 7.31 87.66 0.64 21.79 16 11 O -0.61 -32.61 13.13 -3.09 -0.04 -32.65 16 12 C 0.05 1.72 5.32 85.55 0.45 2.18 16 13 N -0.51 -16.97 5.21 -889.65 -4.64 -21.60 16 14 C 0.04 1.25 4.69 86.84 0.41 1.66 16 15 C 0.10 2.49 4.05 32.05 0.13 2.62 16 16 H 0.11 2.07 8.01 -2.39 -0.02 2.05 16 17 O -0.57 -14.00 13.48 -148.98 -2.01 -16.01 16 18 C 0.14 3.69 2.99 46.17 0.14 3.83 16 19 H 0.08 2.64 7.62 -2.38 -0.02 2.63 16 20 N -0.69 -15.68 5.11 -440.03 -2.25 -17.93 16 21 C 0.60 16.38 7.82 86.72 0.68 17.06 16 22 O -0.57 -20.26 16.36 -3.95 -0.06 -20.33 16 23 C -0.06 -1.23 7.13 42.45 0.30 -0.93 16 24 N -0.23 -3.19 11.91 -48.15 -0.57 -3.77 16 25 N -0.34 -1.61 6.86 -56.99 -0.39 -2.00 16 26 H 0.48 -2.33 8.96 -219.99 -1.97 -4.30 16 27 C 0.01 0.05 12.06 83.47 1.01 1.06 16 28 C -0.01 -0.18 8.03 22.47 0.18 0.00 16 29 F -0.12 -2.99 17.03 44.97 0.77 -2.23 16 30 C 0.04 1.04 6.62 86.65 0.57 1.61 16 31 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.40 19.87 7.90 -92.70 -0.73 19.14 16 33 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.06 2.22 7.96 -2.38 -0.02 2.20 16 35 H 0.09 3.41 6.71 -2.39 -0.02 3.39 16 36 H 0.03 1.10 7.53 -2.38 -0.02 1.09 16 37 H 0.40 6.54 9.12 -74.06 -0.68 5.87 16 38 H 0.42 7.36 8.26 -92.71 -0.77 6.59 16 39 H 0.25 -0.99 8.06 -2.91 -0.02 -1.01 16 40 H 0.10 2.48 8.03 -2.39 -0.02 2.47 16 41 H 0.07 1.88 7.50 -2.39 -0.02 1.86 16 Total: -1.00 -82.96 358.77 -5.70 -88.66 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -2.99 Total: 31.98 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 5.79 Total: 32.41 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -9.19 Total: -127.07 kcal Atomic # 8 Polarization: -66.87 SS G_CDS: -2.11 Total: -68.99 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.77 Total: -2.23 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -82.96 -5.70 -88.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195932633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.928 kcal (2) G-P(sol) polarization free energy of solvation -82.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds