Wall clock time and date at job start Sat Apr 11 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86792 * 120.00011 * 2 1 4 4 H 1.48503 * 109.47294 * 239.99629 * 3 2 1 5 5 H 1.48504 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47336 * 119.99689 * 3 2 1 7 7 C 1.38799 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00128 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.81010 * 99.99860 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47115 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00041 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00048 * 179.97438 * 11 10 9 14 14 C 1.46932 * 120.63377 * 179.97438 * 13 11 10 15 15 C 1.53188 * 108.78038 * 233.63799 * 14 13 11 16 16 C 1.53050 * 109.30852 * 305.36261 * 15 14 13 17 17 N 1.46900 * 109.45899 * 181.38443 * 16 15 14 18 18 C 1.46900 * 110.99904 * 155.00037 * 17 16 15 19 19 C 1.50697 * 109.47148 * 179.97438 * 18 17 16 20 20 N 1.30890 * 125.91503 * 274.98110 * 19 18 17 21 21 C 1.33539 * 109.78191 * 180.02562 * 20 19 18 22 22 O 1.35865 * 125.58642 * 180.02562 * 21 20 19 23 23 N 1.31071 * 108.82596 * 0.25685 * 21 20 19 24 24 N 1.34359 * 125.90951 * 95.01362 * 19 18 17 25 25 H 0.96996 * 126.77526 * 359.97267 * 24 19 18 26 26 C 1.53038 * 109.53538 * 61.36806 * 16 15 14 27 27 C 1.46921 * 120.63096 * 0.02927 * 13 11 10 28 28 H 0.96999 * 119.99771 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46898 * 60.00230 * 10 9 7 30 30 H 1.08996 * 109.46995 * 300.00239 * 10 9 7 31 31 H 1.09001 * 109.58408 * 113.84276 * 14 13 11 32 32 H 1.09006 * 109.70178 * 353.49209 * 14 13 11 33 33 H 1.08996 * 109.49845 * 185.41557 * 15 14 13 34 34 H 1.09001 * 109.52442 * 65.32794 * 15 14 13 35 35 H 1.08996 * 109.45752 * 301.35854 * 16 15 14 36 36 H 1.00900 * 111.00040 * 278.95660 * 17 16 15 37 37 H 1.08997 * 109.47217 * 60.00053 * 18 17 16 38 38 H 1.09000 * 109.47002 * 300.00234 * 18 17 16 39 39 H 0.96700 * 114.00317 * 89.99725 * 22 21 20 40 40 H 1.08999 * 109.50436 * 58.58482 * 26 16 15 41 41 H 1.09003 * 109.49632 * 178.68120 * 26 16 15 42 42 H 1.09003 * 109.58987 * 246.15220 * 27 13 11 43 43 H 1.09005 * 109.58543 * 6.43468 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9874 -5.3027 0.0048 12 8 0.7911 -5.5023 0.0050 13 7 2.8441 -6.3431 0.0054 14 6 2.3440 -7.7248 0.0078 15 6 2.9860 -8.4795 1.1761 16 6 4.5089 -8.3625 1.0785 17 7 5.1288 -9.1129 2.1786 18 6 6.4926 -9.5313 1.8277 19 6 7.0952 -10.2959 2.9779 20 7 7.7039 -9.7735 4.0122 21 6 8.1117 -10.7437 4.8342 22 8 8.7774 -10.5607 6.0044 23 7 7.7689 -11.9016 4.3247 24 7 7.1011 -11.6321 3.1190 25 1 6.7223 -12.2823 2.5070 26 6 4.9160 -6.8902 1.1725 27 6 4.2958 -6.1174 0.0047 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7306 0.8928 30 1 3.1244 -3.7322 -0.8871 31 1 2.6090 -8.2109 -0.9312 32 1 1.2603 -7.7231 0.1252 33 1 2.6983 -9.5300 1.1325 34 1 2.6476 -8.0484 2.1182 35 1 4.8441 -8.7716 0.1255 36 1 5.1242 -8.5740 3.0317 37 1 7.1004 -8.6509 1.6190 38 1 6.4610 -10.1686 0.9440 39 1 8.2004 -10.4657 6.7745 40 1 4.5594 -6.4735 2.1145 41 1 6.0021 -6.8095 1.1265 42 1 4.7205 -6.4722 -0.9344 43 1 4.5001 -5.0528 0.1190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199387692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:19 Heat of formation + Delta-G solvation = 21.668445 kcal Electronic energy + Delta-G solvation = -26261.959912 eV Core-core repulsion = 22277.890790 eV Total energy + Delta-G solvation = -3984.069122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.71987 -40.10260 -38.22612 -37.82117 -35.63775 -32.87186 -32.62188 -32.44224 -31.63744 -30.47480 -28.95618 -26.66200 -25.50218 -23.84542 -23.39988 -23.04477 -21.55905 -21.12047 -19.38385 -18.96116 -18.11895 -17.75283 -16.89600 -16.55684 -16.06776 -15.69295 -15.55121 -15.33709 -15.12937 -14.81782 -14.53624 -14.14763 -14.07081 -13.89114 -13.37289 -13.16602 -12.98862 -12.77947 -12.62123 -12.47727 -12.30685 -12.03733 -11.77328 -11.48502 -11.18730 -11.05181 -11.05165 -10.87724 -10.77117 -10.66083 -10.45372 -10.14114 -9.83112 -9.40587 -9.07460 -9.03779 -8.58516 -8.24882 -6.52070 -6.22951 -3.93912 0.89709 1.84720 2.09899 2.87710 2.90448 3.01566 3.22286 3.24471 3.27972 3.55984 3.62112 3.96327 4.14178 4.18723 4.36122 4.48804 4.70311 4.76115 4.83622 4.90976 5.00925 5.06683 5.12048 5.21728 5.32322 5.37161 5.41040 5.50918 5.55125 5.58832 5.66339 5.79207 5.83025 5.88331 5.97779 6.08291 6.33140 6.43556 6.60058 6.72169 6.92299 7.44249 7.50757 7.57693 8.33304 8.52701 9.22136 10.84353 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.001906 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.273717 B =14686.050452 C =15846.211539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.621 5.621 14 C 0.113 3.887 15 C -0.120 4.120 16 C 0.091 3.909 17 N -0.680 5.680 18 C 0.132 3.868 19 C 0.310 3.690 20 N -0.543 5.543 21 C 0.405 3.595 22 O -0.440 6.440 23 N -0.311 5.311 24 N -0.457 5.457 25 H 0.448 0.552 26 C -0.167 4.167 27 C 0.113 3.887 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.354 0.646 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.410 0.590 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.295 -23.629 3.613 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.390 6.390 13 N -0.358 5.358 14 C -0.010 4.010 15 C -0.159 4.159 16 C -0.018 4.018 17 N -0.312 5.312 18 C 0.000 4.000 19 C 0.031 3.969 20 N -0.282 5.282 21 C 0.086 3.914 22 O -0.241 6.241 23 N -0.154 5.154 24 N -0.178 5.178 25 H 0.295 0.705 26 C -0.207 4.207 27 C -0.011 4.011 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.173 0.827 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.267 0.733 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.886 -24.720 3.690 28.592 hybrid contribution 2.015 1.810 0.108 2.711 sum 15.901 -22.910 3.798 28.145 Atomic orbital electron populations 1.70010 1.05941 1.27577 1.46707 1.24993 0.95037 0.99023 0.94525 0.86228 0.79244 0.81248 0.78801 1.19939 1.20807 1.19929 1.22812 0.94830 0.91641 1.59130 0.91007 1.85413 1.04963 0.96339 1.96702 1.23555 1.06489 0.95471 1.04633 1.20333 0.86213 0.86216 0.74896 1.90693 1.15201 1.85218 1.47915 1.48123 1.06199 1.05868 1.75601 1.21518 1.00957 0.81081 0.97449 1.21891 0.93339 1.01106 0.99532 1.21620 0.95223 0.91057 0.93942 1.60663 1.16256 1.47199 1.07119 1.20494 0.90017 0.98383 0.91066 1.24002 0.94344 0.82775 0.95772 1.70283 1.19261 1.33871 1.04780 1.21138 0.94056 0.85685 0.90534 1.84916 1.32246 1.93575 1.13323 1.78240 1.18368 1.21429 0.97341 1.47716 1.43931 1.07543 1.18659 0.70508 1.22676 1.00961 0.96605 1.00449 1.21600 0.80172 1.01634 0.97724 0.92117 0.89322 0.89300 0.91839 0.88581 0.90084 0.91212 0.89783 0.82666 0.90481 0.88090 0.73251 0.90674 0.90638 0.91431 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -2.97 4.50 36.00 0.16 -2.81 16 11 C 0.54 9.76 7.72 -10.99 -0.08 9.67 16 12 O -0.52 -11.48 15.28 5.56 0.08 -11.39 16 13 N -0.62 -7.96 2.97 -172.79 -0.51 -8.47 16 14 C 0.11 1.18 6.43 -3.71 -0.02 1.16 16 15 C -0.12 -0.95 5.69 -26.61 -0.15 -1.10 16 16 C 0.09 0.54 2.43 -67.67 -0.16 0.38 16 17 N -0.68 -3.74 6.24 -107.95 -0.67 -4.41 16 18 C 0.13 0.57 6.11 -4.98 -0.03 0.54 16 19 C 0.31 2.17 7.74 -155.71 -1.21 0.96 16 20 N -0.54 -5.36 11.21 -12.10 -0.14 -5.49 16 21 C 0.41 4.05 9.46 -91.25 -0.86 3.19 16 22 O -0.44 -3.63 13.66 -19.32 -0.26 -3.90 16 23 N -0.31 -2.97 12.81 29.18 0.37 -2.60 16 24 N -0.46 -2.92 7.44 32.62 0.24 -2.67 16 25 H 0.45 1.33 8.96 -182.34 -1.63 -0.31 16 26 C -0.17 -1.18 5.33 -26.63 -0.14 -1.32 16 27 C 0.11 1.05 6.34 -3.73 -0.02 1.02 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.62 7.70 -51.91 -0.40 1.22 16 30 H 0.09 1.61 7.94 -51.92 -0.41 1.20 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.23 7.01 -51.93 -0.36 0.86 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.41 7.80 -51.93 -0.40 0.00 16 36 H 0.35 2.34 8.47 -39.29 -0.33 2.00 16 37 H 0.08 0.33 7.41 -51.93 -0.38 -0.05 16 38 H 0.10 0.21 8.05 -51.93 -0.42 -0.21 16 39 H 0.41 1.20 9.06 45.56 0.41 1.61 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.42 7.42 -51.93 -0.39 0.04 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.92 5.93 -51.93 -0.31 0.61 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -37.99 373.60 -10.38 -48.36 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.29 Total: -1.10 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.33 Total: -1.07 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.03 Total: -48.86 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.18 Total: -15.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.99 -10.38 -48.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199387692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.033 kcal (2) G-P(sol) polarization free energy of solvation -37.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds