Wall clock time and date at job start Sat Apr 11 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86792 * 120.00011 * 2 1 4 4 H 1.48503 * 109.47294 * 239.99629 * 3 2 1 5 5 H 1.48504 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47336 * 119.99689 * 3 2 1 7 7 C 1.38799 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00128 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.81010 * 99.99860 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47115 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00041 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00048 * 179.97438 * 11 10 9 14 14 C 1.46932 * 120.63377 * 179.97438 * 13 11 10 15 15 C 1.53188 * 108.78038 * 233.63799 * 14 13 11 16 16 C 1.53050 * 109.30852 * 305.36261 * 15 14 13 17 17 N 1.46900 * 109.45899 * 181.38443 * 16 15 14 18 18 C 1.46900 * 110.99904 * 155.00037 * 17 16 15 19 19 C 1.50697 * 109.47148 * 179.97438 * 18 17 16 20 20 N 1.30890 * 125.91503 * 274.98110 * 19 18 17 21 21 C 1.33539 * 109.78191 * 180.02562 * 20 19 18 22 22 O 1.35865 * 125.58642 * 180.02562 * 21 20 19 23 23 N 1.31071 * 108.82596 * 0.25685 * 21 20 19 24 24 N 1.34359 * 125.90951 * 95.01362 * 19 18 17 25 25 H 0.96996 * 126.77526 * 359.97267 * 24 19 18 26 26 C 1.53038 * 109.53538 * 61.36806 * 16 15 14 27 27 C 1.46921 * 120.63096 * 0.02927 * 13 11 10 28 28 H 0.96999 * 119.99771 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46898 * 60.00230 * 10 9 7 30 30 H 1.08996 * 109.46995 * 300.00239 * 10 9 7 31 31 H 1.09001 * 109.58408 * 113.84276 * 14 13 11 32 32 H 1.09006 * 109.70178 * 353.49209 * 14 13 11 33 33 H 1.08996 * 109.49845 * 185.41557 * 15 14 13 34 34 H 1.09001 * 109.52442 * 65.32794 * 15 14 13 35 35 H 1.08996 * 109.45752 * 301.35854 * 16 15 14 36 36 H 1.00900 * 111.00040 * 278.95660 * 17 16 15 37 37 H 1.08997 * 109.47217 * 60.00053 * 18 17 16 38 38 H 1.09000 * 109.47002 * 300.00234 * 18 17 16 39 39 H 0.96700 * 114.00317 * 89.99725 * 22 21 20 40 40 H 1.08999 * 109.50436 * 58.58482 * 26 16 15 41 41 H 1.09003 * 109.49632 * 178.68120 * 26 16 15 42 42 H 1.09003 * 109.58987 * 246.15220 * 27 13 11 43 43 H 1.09005 * 109.58543 * 6.43468 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9874 -5.3027 0.0048 12 8 0.7911 -5.5023 0.0050 13 7 2.8441 -6.3431 0.0054 14 6 2.3440 -7.7248 0.0078 15 6 2.9860 -8.4795 1.1761 16 6 4.5089 -8.3625 1.0785 17 7 5.1288 -9.1129 2.1786 18 6 6.4926 -9.5313 1.8277 19 6 7.0952 -10.2959 2.9779 20 7 7.7039 -9.7735 4.0122 21 6 8.1117 -10.7437 4.8342 22 8 8.7774 -10.5607 6.0044 23 7 7.7689 -11.9016 4.3247 24 7 7.1011 -11.6321 3.1190 25 1 6.7223 -12.2823 2.5070 26 6 4.9160 -6.8902 1.1725 27 6 4.2958 -6.1174 0.0047 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7306 0.8928 30 1 3.1244 -3.7322 -0.8871 31 1 2.6090 -8.2109 -0.9312 32 1 1.2603 -7.7231 0.1252 33 1 2.6983 -9.5300 1.1325 34 1 2.6476 -8.0484 2.1182 35 1 4.8441 -8.7716 0.1255 36 1 5.1242 -8.5740 3.0317 37 1 7.1004 -8.6509 1.6190 38 1 6.4610 -10.1686 0.9440 39 1 8.2004 -10.4657 6.7745 40 1 4.5594 -6.4735 2.1145 41 1 6.0021 -6.8095 1.1265 42 1 4.7205 -6.4722 -0.9344 43 1 4.5001 -5.0528 0.1190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199387692.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:18 Heat of formation + Delta-G solvation = -12.905162 kcal Electronic energy + Delta-G solvation = -26263.459136 eV Core-core repulsion = 22277.890790 eV Total energy + Delta-G solvation = -3985.568346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.28903 -41.16601 -39.07925 -38.47966 -36.47190 -34.57864 -33.57563 -33.31184 -32.42874 -31.20988 -30.24431 -27.70160 -27.21032 -24.61216 -24.16312 -23.62824 -22.07048 -21.90956 -20.43110 -19.73209 -19.45848 -18.66838 -18.17550 -17.17330 -16.92553 -16.86054 -16.78592 -16.39258 -16.10641 -15.80040 -15.66755 -15.08713 -14.95327 -14.87371 -14.46304 -14.27404 -13.98743 -13.72168 -13.37503 -13.34155 -13.19927 -13.15988 -12.88833 -12.85947 -12.64059 -12.53864 -12.18370 -11.81872 -11.72229 -11.49990 -11.25549 -11.12349 -11.07444 -10.85448 -10.72442 -10.25993 -9.68725 -9.43796 -8.66761 -8.33874 -6.12317 0.34665 1.26848 1.36652 1.44281 1.46851 1.53820 1.56290 1.60828 2.14774 2.28399 2.37974 3.00037 3.14077 3.26773 3.49539 3.67189 3.72275 3.83555 4.00447 4.09170 4.23152 4.27381 4.37980 4.44445 4.48959 4.50583 4.56722 4.71665 4.77994 4.88159 4.93121 4.95802 4.98664 5.07784 5.19475 5.32211 5.41827 5.65095 5.90597 6.05955 6.19957 6.22523 6.32622 6.48853 6.87302 7.07108 7.18175 8.75010 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017213 B = 0.001906 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.273717 B =14686.050452 C =15846.211539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.155 6.155 10 C -0.123 4.123 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.606 5.606 14 C 0.109 3.891 15 C -0.111 4.111 16 C 0.101 3.899 17 N -0.680 5.680 18 C 0.135 3.865 19 C 0.317 3.683 20 N -0.575 5.575 21 C 0.392 3.608 22 O -0.452 6.452 23 N -0.336 5.336 24 N -0.444 5.444 25 H 0.462 0.538 26 C -0.160 4.160 27 C 0.103 3.897 28 H 0.271 0.729 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.112 0.888 36 H 0.347 0.653 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.428 0.572 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.300 -24.610 2.634 30.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.274 4.274 11 C 0.319 3.681 12 O -0.448 6.448 13 N -0.341 5.341 14 C -0.013 4.013 15 C -0.150 4.150 16 C -0.009 4.009 17 N -0.311 5.311 18 C 0.004 3.996 19 C 0.038 3.962 20 N -0.314 5.314 21 C 0.073 3.927 22 O -0.256 6.256 23 N -0.180 5.180 24 N -0.168 5.168 25 H 0.313 0.687 26 C -0.200 4.200 27 C -0.019 4.019 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.165 0.835 37 H 0.103 0.897 38 H 0.152 0.848 39 H 0.289 0.711 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.936 -25.766 2.710 30.953 hybrid contribution 1.137 1.948 0.420 2.294 sum 18.073 -23.818 3.131 30.062 Atomic orbital electron populations 1.70184 1.07972 1.28643 1.47944 1.26138 0.95977 1.03337 0.93767 0.85010 0.77810 0.75685 0.79535 1.18537 1.20482 1.18675 1.23154 0.95306 0.91926 1.58926 0.89889 1.85602 1.10778 0.99334 1.97022 1.23367 1.03255 0.94602 1.06184 1.20111 0.86039 0.86744 0.75238 1.90674 1.17399 1.85812 1.50937 1.48144 1.07337 1.05567 1.73013 1.21723 0.99583 0.79910 1.00074 1.21797 0.94915 1.01236 0.97027 1.21527 0.93540 0.90483 0.95304 1.60607 1.17121 1.46789 1.06631 1.20715 0.89054 0.98959 0.90865 1.24457 0.93302 0.82919 0.95552 1.70276 1.20603 1.34656 1.05870 1.21370 0.94337 0.85956 0.91087 1.84854 1.33303 1.93566 1.13849 1.78153 1.19294 1.21803 0.98719 1.47646 1.43231 1.07936 1.17976 0.68745 1.22643 1.02156 0.96856 0.98345 1.21957 0.77697 1.01930 1.00349 0.92021 0.87774 0.87407 0.88882 0.91619 0.88424 0.93556 0.86990 0.83471 0.89746 0.84792 0.71096 0.92610 0.88149 0.88271 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.55 -30.95 9.50 67.95 0.65 -30.30 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.12 -4.84 4.50 71.23 0.32 -4.51 16 11 C 0.53 19.50 7.72 87.66 0.68 20.18 16 12 O -0.57 -26.44 15.28 -3.03 -0.05 -26.49 16 13 N -0.61 -14.60 2.97 -818.97 -2.43 -17.03 16 14 C 0.11 2.10 6.43 86.36 0.56 2.66 16 15 C -0.11 -1.49 5.69 30.67 0.17 -1.31 16 16 C 0.10 0.80 2.43 44.94 0.11 0.91 16 17 N -0.68 -5.10 6.24 -495.44 -3.09 -8.19 16 18 C 0.14 0.62 6.11 85.56 0.52 1.14 16 19 C 0.32 3.63 7.74 138.23 1.07 4.70 16 20 N -0.57 -10.52 11.21 -304.31 -3.41 -13.93 16 21 C 0.39 7.56 9.46 180.57 1.71 9.26 16 22 O -0.45 -7.31 13.66 -92.03 -1.26 -8.57 16 23 N -0.34 -6.07 12.81 -174.94 -2.24 -8.32 16 24 N -0.44 -4.71 7.44 -50.72 -0.38 -5.08 16 25 H 0.46 1.49 8.96 -213.10 -1.91 -0.42 16 26 C -0.16 -1.70 5.33 30.66 0.16 -1.54 16 27 C 0.10 1.57 6.34 86.35 0.55 2.12 16 28 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.10 3.74 7.70 -2.39 -0.02 3.72 16 30 H 0.11 3.80 7.94 -2.40 -0.02 3.78 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.70 7.01 -2.38 -0.02 1.69 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 0.38 7.80 -2.39 -0.02 0.37 16 36 H 0.35 3.74 8.47 -89.69 -0.76 2.98 16 37 H 0.08 0.34 7.41 -2.39 -0.02 0.32 16 38 H 0.13 -0.22 8.05 -2.39 -0.02 -0.24 16 39 H 0.43 2.40 9.06 -74.06 -0.67 1.73 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 0.65 7.42 -2.39 -0.02 0.63 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.44 5.93 -2.38 -0.01 1.43 16 Total: -1.00 -87.49 373.60 -7.00 -94.49 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -2.25 Total: 8.74 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 6.96 Total: 4.48 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -11.27 Total: -108.18 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.30 Total: -35.06 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -87.49 -7.00 -94.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199387692.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.583 kcal (2) G-P(sol) polarization free energy of solvation -87.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds