Wall clock time and date at job start Sat Apr 11 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30214 * 126.78687 * 2 1 4 4 O 1.20918 * 111.64909 * 180.02562 * 3 2 1 5 5 C 1.34076 * 111.54800 * 359.76437 * 4 3 2 6 6 Cl 1.73592 * 126.79587 * 180.25728 * 5 4 3 7 7 C 1.35677 * 106.40185 * 0.37782 * 5 4 3 8 8 C 1.50698 * 128.00779 * 179.91203 * 7 5 4 9 9 C 1.53001 * 109.47494 * 269.67874 * 8 7 5 10 10 C 1.50698 * 109.47494 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99669 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00191 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00030 * 180.02562 * 12 10 9 14 14 H 1.08995 * 110.88676 * 37.42987 * 13 12 10 15 15 C 1.54913 * 111.00373 * 273.54696 * 13 12 10 16 16 N 1.47422 * 104.83247 * 204.87955 * 15 13 12 17 17 C 1.36932 * 125.64904 * 204.08989 * 16 15 13 18 18 H 1.08001 * 120.00172 * 168.15896 * 17 16 15 19 19 C 1.38810 * 119.99990 * 348.16681 * 17 16 15 20 20 N 1.31624 * 119.99867 * 326.24876 * 19 17 16 21 21 Si 1.86800 * 120.00129 * 145.98140 * 19 17 16 22 22 H 1.48506 * 109.47282 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47535 * 119.99869 * 21 19 17 24 24 H 1.48503 * 109.47098 * 239.99494 * 21 19 17 25 25 C 1.47024 * 108.70201 * 24.35686 * 16 15 13 26 26 C 1.54334 * 107.26646 * 358.58505 * 25 16 15 27 27 H 1.09004 * 110.66854 * 96.52150 * 26 25 16 28 28 C 1.52995 * 110.85086 * 219.67074 * 26 25 16 29 29 H 1.09008 * 109.47098 * 269.97245 * 1 2 3 30 30 H 1.09002 * 109.47305 * 29.97183 * 1 2 3 31 31 H 1.08996 * 109.47147 * 149.97593 * 1 2 3 32 32 H 1.09008 * 109.47409 * 149.67907 * 8 7 5 33 33 H 1.08997 * 109.47611 * 29.68164 * 8 7 5 34 34 H 1.08998 * 109.46662 * 59.99632 * 9 8 7 35 35 H 1.08997 * 109.46928 * 300.00708 * 9 8 7 36 36 H 0.97006 * 119.99702 * 0.02562 * 12 10 9 37 37 H 1.08998 * 110.36702 * 86.04149 * 15 13 12 38 38 H 1.08997 * 110.45893 * 323.76573 * 15 13 12 39 39 H 0.96994 * 119.99575 * 353.97716 * 20 19 17 40 40 H 1.09007 * 109.88319 * 118.13184 * 25 16 15 41 41 H 1.09002 * 109.88170 * 239.29426 * 25 16 15 42 42 H 1.09000 * 109.47522 * 173.69225 * 28 26 25 43 43 H 1.09001 * 109.47262 * 293.69322 * 28 26 25 44 44 H 1.09001 * 109.47218 * 53.69162 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7271 -0.0005 5 6 3.6037 -0.6053 0.0042 6 17 5.1012 -1.4833 0.0116 7 6 2.3531 -1.1313 -0.0006 8 6 1.9581 -2.5856 -0.0002 9 6 1.8231 -3.0780 -1.4425 10 6 1.4275 -4.5322 -1.4420 11 8 1.2687 -5.1170 -0.3915 12 7 1.2492 -5.1825 -2.6090 13 6 0.8641 -6.5959 -2.6085 14 1 0.1656 -6.8080 -1.7991 15 6 2.1109 -7.5111 -2.5201 16 7 1.6863 -8.7867 -3.1249 17 6 2.2426 -10.0127 -2.8749 18 1 1.7467 -10.9101 -3.2143 19 6 3.4438 -10.1021 -2.1849 20 7 4.3590 -9.1678 -2.3331 21 14 3.7584 -11.5446 -1.0404 22 1 2.5786 -12.4466 -1.0449 23 1 4.9552 -12.2919 -1.5033 24 1 3.9912 -11.0416 0.3373 25 6 0.5708 -8.5236 -4.0458 26 6 0.2692 -7.0115 -3.9799 27 1 0.7683 -6.4838 -4.7926 28 6 -1.2386 -6.7549 -4.0160 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.0044 -2.7030 0.5145 33 1 2.7221 -3.1696 0.5131 34 1 2.7768 -2.9606 -1.9571 35 1 1.0591 -2.4941 -1.9557 36 1 1.3759 -4.7145 -3.4492 37 1 2.3980 -7.6616 -1.4795 38 1 2.9395 -7.0815 -3.0832 39 1 4.2319 -8.4642 -2.9886 40 1 0.8540 -8.8033 -5.0606 41 1 -0.3078 -9.0889 -3.7349 42 1 -1.4306 -5.6939 -3.8560 43 1 -1.6349 -7.0534 -4.9865 44 1 -1.7248 -7.3345 -3.2312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211418830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:29 Heat of formation + Delta-G solvation = 32.932042 kcal Electronic energy + Delta-G solvation = -27334.319968 eV Core-core repulsion = 23316.402815 eV Total energy + Delta-G solvation = -4017.917154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -45.39477 -39.80051 -37.88532 -37.50669 -36.09503 -34.13604 -33.41761 -32.82312 -30.91638 -30.40297 -29.14439 -28.04676 -25.63346 -25.43296 -23.49244 -21.93243 -21.65287 -20.61496 -20.22490 -19.56199 -18.20306 -18.02324 -17.53200 -16.90587 -16.08165 -15.96459 -15.22002 -14.64668 -14.35999 -14.04118 -13.78759 -13.69262 -13.49541 -13.32108 -13.18202 -13.05437 -12.99274 -12.88324 -12.70901 -12.53363 -12.44492 -12.10798 -11.81591 -11.52209 -11.49958 -11.05467 -10.87294 -10.69634 -10.64052 -10.43015 -10.31351 -10.09720 -9.99685 -9.75831 -9.66006 -9.44613 -8.69819 -8.31287 -6.96258 -6.14023 -3.07530 0.77394 0.85628 1.68691 2.79937 3.19350 3.37322 3.55054 3.59705 3.67647 3.72317 4.19421 4.45798 4.57547 4.62783 4.77673 4.89542 4.98138 5.03441 5.10806 5.17371 5.21577 5.25544 5.28961 5.32836 5.40657 5.62722 5.63241 5.75414 5.77731 5.84895 5.92807 5.97362 6.03566 6.20331 6.27859 6.56560 6.59856 6.78859 6.98371 7.08233 7.69570 7.70399 7.80466 8.40598 8.50099 9.01009 9.82944 10.37086 11.20351 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.002767 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.726659 B =10116.575816 C =11663.501240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.034 3.966 3 N -0.349 5.349 4 O 0.108 5.892 5 C 0.000 4.000 6 Cl 0.055 6.945 7 C -0.164 4.164 8 C -0.031 4.031 9 C -0.135 4.135 10 C 0.512 3.488 11 O -0.534 6.534 12 N -0.717 5.717 13 C 0.130 3.870 14 H 0.094 0.906 15 C 0.141 3.859 16 N -0.601 5.601 17 C -0.345 4.345 18 H 0.068 0.932 19 C -0.020 4.020 20 N -0.906 5.906 21 Si 1.060 2.940 22 H -0.291 1.291 23 H -0.295 1.295 24 H -0.289 1.289 25 C 0.141 3.859 26 C -0.110 4.110 27 H 0.075 0.925 28 C -0.137 4.137 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.396 0.604 37 H 0.056 0.944 38 H 0.024 0.976 39 H 0.268 0.732 40 H 0.024 0.976 41 H 0.030 0.970 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 20.211 0.731 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 N -0.055 5.055 4 O 0.041 5.959 5 C -0.090 4.090 6 Cl 0.084 6.916 7 C -0.169 4.169 8 C -0.069 4.069 9 C -0.176 4.176 10 C 0.298 3.702 11 O -0.411 6.411 12 N -0.367 5.367 13 C 0.025 3.975 14 H 0.112 0.888 15 C 0.015 3.985 16 N -0.328 5.328 17 C -0.472 4.472 18 H 0.086 0.914 19 C -0.223 4.223 20 N -0.546 5.546 21 Si 0.889 3.111 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.216 1.216 25 C 0.015 3.985 26 C -0.130 4.130 27 H 0.093 0.907 28 C -0.195 4.195 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.230 0.770 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.223 20.257 2.604 21.351 hybrid contribution -0.633 0.022 -1.706 1.820 sum -6.856 20.279 0.898 21.425 Atomic orbital electron populations 1.20248 0.85130 1.04232 1.03968 1.23368 0.99182 0.87855 1.02097 1.73944 0.88590 1.23033 1.19979 1.84914 1.22056 1.20826 1.68078 1.24693 0.91426 0.84825 1.08068 1.98491 1.27898 1.68637 1.96607 1.20916 0.89787 0.98394 1.07764 1.19721 1.04385 0.86406 0.96383 1.21620 1.03983 0.93508 0.98447 1.20450 0.77146 0.88611 0.84022 1.90743 1.50335 1.68910 1.31074 1.45926 1.70580 1.12009 1.08208 1.22376 0.98298 0.79183 0.97630 0.88822 1.21767 0.92625 0.85773 0.98379 1.44476 1.37593 1.03764 1.47013 1.19697 1.05845 0.82751 1.38903 0.91405 1.25659 0.90873 1.03915 1.01834 1.70737 1.31367 1.16270 1.36251 0.83643 0.74968 0.75190 0.77257 1.21762 1.22281 1.21559 1.21360 0.92062 0.91209 0.93828 1.22420 0.95868 0.98169 0.96496 0.90685 1.21735 0.94964 1.00982 1.01776 0.89633 0.90151 0.89470 0.88865 0.88873 0.88670 0.88862 0.77004 0.92525 0.95861 0.92162 0.95785 0.95205 0.93006 0.92661 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.39 36.01 0.37 -0.13 16 2 C 0.03 0.32 7.32 -82.13 -0.60 -0.28 16 3 N -0.35 -3.91 12.07 33.44 0.40 -3.51 16 4 O 0.11 1.19 11.20 17.08 0.19 1.38 16 5 C 0.00 0.00 8.12 29.82 0.24 0.24 16 6 Cl 0.06 0.54 29.23 -51.86 -1.52 -0.98 16 7 C -0.16 -1.61 5.58 -104.39 -0.58 -2.19 16 8 C -0.03 -0.31 4.90 -27.88 -0.14 -0.45 16 9 C -0.14 -1.32 5.68 -27.88 -0.16 -1.48 16 10 C 0.51 7.31 7.83 -10.99 -0.09 7.22 16 11 O -0.53 -10.01 15.73 5.56 0.09 -9.93 16 12 N -0.72 -9.94 5.23 -51.73 -0.27 -10.21 16 13 C 0.13 2.32 2.77 -65.78 -0.18 2.13 16 14 H 0.09 1.83 7.63 -51.93 -0.40 1.43 16 15 C 0.14 3.33 5.03 -2.53 -0.01 3.32 16 16 N -0.60 -15.33 3.33 -170.06 -0.57 -15.90 16 17 C -0.34 -9.88 9.97 -15.06 -0.15 -10.03 16 18 H 0.07 1.94 8.02 -52.49 -0.42 1.52 16 19 C -0.02 -0.59 4.96 -17.43 -0.09 -0.68 16 20 N -0.91 -27.72 12.86 55.49 0.71 -27.01 16 21 Si 1.06 26.00 30.03 -169.99 -5.10 20.89 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.30 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.14 2.88 6.85 -3.06 -0.02 2.86 16 26 C -0.11 -1.72 3.16 -88.78 -0.28 -2.00 16 27 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 28 C -0.14 -1.71 9.16 37.16 0.34 -1.37 16 29 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.92 8.10 -51.92 -0.42 0.50 16 33 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 4.20 8.52 -40.82 -0.35 3.86 16 37 H 0.06 1.56 7.81 -51.93 -0.41 1.16 16 38 H 0.02 0.58 7.02 -51.93 -0.36 0.22 16 39 H 0.27 8.20 6.43 -40.82 -0.26 7.93 16 40 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.03 0.60 7.77 -51.93 -0.40 0.20 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -34.36 383.31 -8.08 -42.44 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.45 Total: -0.11 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.34 Total: -2.85 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.28 Total: -8.54 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.10 Total: 20.89 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -1.52 Total: -0.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.36 -8.08 -42.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211418830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.372 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds