Wall clock time and date at job start Sat Apr 11 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30214 * 126.78687 * 2 1 4 4 O 1.20918 * 111.64909 * 180.02562 * 3 2 1 5 5 C 1.34076 * 111.54800 * 359.76437 * 4 3 2 6 6 Cl 1.73592 * 126.79587 * 180.25728 * 5 4 3 7 7 C 1.35677 * 106.40185 * 0.37782 * 5 4 3 8 8 C 1.50698 * 128.00779 * 179.91203 * 7 5 4 9 9 C 1.53001 * 109.47494 * 269.67874 * 8 7 5 10 10 C 1.50698 * 109.47494 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99669 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00191 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00030 * 180.02562 * 12 10 9 14 14 H 1.08995 * 110.88676 * 37.42987 * 13 12 10 15 15 C 1.54913 * 111.00373 * 273.54696 * 13 12 10 16 16 N 1.47422 * 104.83247 * 204.87955 * 15 13 12 17 17 C 1.36932 * 125.64904 * 204.08989 * 16 15 13 18 18 H 1.08001 * 120.00172 * 168.15896 * 17 16 15 19 19 C 1.38810 * 119.99990 * 348.16681 * 17 16 15 20 20 N 1.31624 * 119.99867 * 326.24876 * 19 17 16 21 21 Si 1.86800 * 120.00129 * 145.98140 * 19 17 16 22 22 H 1.48506 * 109.47282 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47535 * 119.99869 * 21 19 17 24 24 H 1.48503 * 109.47098 * 239.99494 * 21 19 17 25 25 C 1.47024 * 108.70201 * 24.35686 * 16 15 13 26 26 C 1.54334 * 107.26646 * 358.58505 * 25 16 15 27 27 H 1.09004 * 110.66854 * 96.52150 * 26 25 16 28 28 C 1.52995 * 110.85086 * 219.67074 * 26 25 16 29 29 H 1.09008 * 109.47098 * 269.97245 * 1 2 3 30 30 H 1.09002 * 109.47305 * 29.97183 * 1 2 3 31 31 H 1.08996 * 109.47147 * 149.97593 * 1 2 3 32 32 H 1.09008 * 109.47409 * 149.67907 * 8 7 5 33 33 H 1.08997 * 109.47611 * 29.68164 * 8 7 5 34 34 H 1.08998 * 109.46662 * 59.99632 * 9 8 7 35 35 H 1.08997 * 109.46928 * 300.00708 * 9 8 7 36 36 H 0.97006 * 119.99702 * 0.02562 * 12 10 9 37 37 H 1.08998 * 110.36702 * 86.04149 * 15 13 12 38 38 H 1.08997 * 110.45893 * 323.76573 * 15 13 12 39 39 H 0.96994 * 119.99575 * 353.97716 * 20 19 17 40 40 H 1.09007 * 109.88319 * 118.13184 * 25 16 15 41 41 H 1.09002 * 109.88170 * 239.29426 * 25 16 15 42 42 H 1.09000 * 109.47522 * 173.69225 * 28 26 25 43 43 H 1.09001 * 109.47262 * 293.69322 * 28 26 25 44 44 H 1.09001 * 109.47218 * 53.69162 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7271 -0.0005 5 6 3.6037 -0.6053 0.0042 6 17 5.1012 -1.4833 0.0116 7 6 2.3531 -1.1313 -0.0006 8 6 1.9581 -2.5856 -0.0002 9 6 1.8231 -3.0780 -1.4425 10 6 1.4275 -4.5322 -1.4420 11 8 1.2687 -5.1170 -0.3915 12 7 1.2492 -5.1825 -2.6090 13 6 0.8641 -6.5959 -2.6085 14 1 0.1656 -6.8080 -1.7991 15 6 2.1109 -7.5111 -2.5201 16 7 1.6863 -8.7867 -3.1249 17 6 2.2426 -10.0127 -2.8749 18 1 1.7467 -10.9101 -3.2143 19 6 3.4438 -10.1021 -2.1849 20 7 4.3590 -9.1678 -2.3331 21 14 3.7584 -11.5446 -1.0404 22 1 2.5786 -12.4466 -1.0449 23 1 4.9552 -12.2919 -1.5033 24 1 3.9912 -11.0416 0.3373 25 6 0.5708 -8.5236 -4.0458 26 6 0.2692 -7.0115 -3.9799 27 1 0.7683 -6.4838 -4.7926 28 6 -1.2386 -6.7549 -4.0160 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.0044 -2.7030 0.5145 33 1 2.7221 -3.1696 0.5131 34 1 2.7768 -2.9606 -1.9571 35 1 1.0591 -2.4941 -1.9557 36 1 1.3759 -4.7145 -3.4492 37 1 2.3980 -7.6616 -1.4795 38 1 2.9395 -7.0815 -3.0832 39 1 4.2319 -8.4642 -2.9886 40 1 0.8540 -8.8033 -5.0606 41 1 -0.3078 -9.0889 -3.7349 42 1 -1.4306 -5.6939 -3.8560 43 1 -1.6349 -7.0534 -4.9865 44 1 -1.7248 -7.3345 -3.2312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211418830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:29 Heat of formation + Delta-G solvation = 10.341161 kcal Electronic energy + Delta-G solvation = -27335.299582 eV Core-core repulsion = 23316.402815 eV Total energy + Delta-G solvation = -4018.896768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.16614 -41.09053 -39.38945 -38.31092 -36.91024 -35.82693 -34.44898 -34.15190 -32.17392 -31.78071 -29.81073 -29.55982 -27.27344 -26.56769 -25.07330 -22.85157 -22.52740 -22.07614 -21.65202 -20.87063 -19.59722 -19.00595 -18.79600 -18.01458 -17.46634 -16.88613 -16.40597 -16.15755 -15.75773 -15.55971 -15.35460 -14.74453 -14.53949 -14.51323 -14.29100 -14.10152 -13.94325 -13.83576 -13.69781 -13.55352 -13.39476 -13.22645 -13.00278 -12.89635 -12.70013 -12.51713 -12.28254 -12.15218 -12.08171 -11.89514 -11.82432 -11.68214 -11.56998 -11.07237 -10.89395 -10.48244 -10.30907 -10.08233 -9.06706 -8.42390 -5.31280 -0.00860 0.06353 0.95430 1.53646 1.61634 1.65389 1.78633 2.11942 2.50052 2.61394 2.98220 3.11932 3.43180 3.50853 3.55000 3.71235 3.75113 3.88837 3.96683 4.00154 4.20649 4.26187 4.35765 4.47666 4.52632 4.54761 4.67061 4.68700 4.79530 4.80613 4.95069 4.96014 4.98230 5.03111 5.05557 5.08546 5.19359 5.23280 5.38766 5.55122 5.65534 6.26321 6.58307 6.84494 6.93649 7.29962 7.67326 8.25146 8.91934 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.002767 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.726659 B =10116.575816 C =11663.501240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.041 3.959 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.003 4.003 6 Cl 0.055 6.945 7 C -0.163 4.163 8 C -0.027 4.027 9 C -0.123 4.123 10 C 0.510 3.490 11 O -0.583 6.583 12 N -0.704 5.704 13 C 0.150 3.850 14 H 0.076 0.924 15 C 0.150 3.850 16 N -0.626 5.626 17 C -0.354 4.354 18 H 0.064 0.936 19 C -0.076 4.076 20 N -0.934 5.934 21 Si 1.110 2.890 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.292 1.292 25 C 0.132 3.868 26 C -0.091 4.091 27 H 0.098 0.902 28 C -0.129 4.129 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.417 0.583 37 H 0.002 0.998 38 H 0.006 0.994 39 H 0.254 0.746 40 H 0.024 0.976 41 H 0.033 0.967 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 21.515 -0.354 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 N -0.079 5.079 4 O 0.031 5.969 5 C -0.093 4.093 6 Cl 0.084 6.916 7 C -0.168 4.168 8 C -0.065 4.065 9 C -0.162 4.162 10 C 0.298 3.702 11 O -0.463 6.463 12 N -0.357 5.357 13 C 0.043 3.957 14 H 0.095 0.905 15 C 0.023 3.977 16 N -0.353 5.353 17 C -0.482 4.482 18 H 0.081 0.919 19 C -0.272 4.272 20 N -0.576 5.576 21 Si 0.934 3.066 22 H -0.196 1.196 23 H -0.213 1.213 24 H -0.219 1.219 25 C 0.007 3.993 26 C -0.110 4.110 27 H 0.116 0.884 28 C -0.186 4.186 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.254 0.746 37 H 0.020 0.980 38 H 0.024 0.976 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.327 21.592 1.462 23.188 hybrid contribution 0.000 -0.399 -1.382 1.439 sum -8.327 21.193 0.080 22.770 Atomic orbital electron populations 1.20446 0.82852 1.05508 1.05001 1.23857 1.00491 0.87037 1.00350 1.73955 0.88768 1.23852 1.21327 1.84900 1.22292 1.21016 1.68646 1.24822 0.91695 0.84838 1.07939 1.98492 1.28000 1.68558 1.96591 1.20869 0.89712 0.98202 1.07997 1.19629 1.03990 0.86275 0.96595 1.21617 1.05666 0.90221 0.98728 1.21275 0.75665 0.90204 0.83076 1.90733 1.52332 1.70358 1.32871 1.45752 1.70179 1.10252 1.09470 1.21878 0.94825 0.80366 0.98645 0.90541 1.21609 0.94897 0.86604 0.94569 1.44749 1.38395 1.03512 1.48645 1.19964 1.05570 0.84185 1.38462 0.91862 1.27016 0.91120 1.05985 1.03114 1.70853 1.32463 1.17179 1.37125 0.82974 0.75894 0.72812 0.74907 1.19562 1.21301 1.21927 1.21626 0.90231 0.94946 0.92520 1.22359 0.98638 0.94574 0.95418 0.88387 1.21695 0.91648 1.02603 1.02686 0.88656 0.89235 0.87809 0.88382 0.90919 0.87507 0.84970 0.74551 0.97957 0.97607 0.93654 0.95815 0.94864 0.90402 0.90580 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.39 71.24 0.74 -0.05 16 2 C 0.04 0.70 7.32 43.54 0.32 1.02 16 3 N -0.37 -7.80 12.07 -49.43 -0.60 -8.40 16 4 O 0.10 2.04 11.20 71.30 0.80 2.83 16 5 C 0.00 -0.06 8.12 67.23 0.55 0.48 16 6 Cl 0.06 1.06 29.23 -2.72 -0.08 0.98 16 7 C -0.16 -2.95 5.58 -19.71 -0.11 -3.06 16 8 C -0.03 -0.50 4.90 29.85 0.15 -0.36 16 9 C -0.12 -2.08 5.68 29.85 0.17 -1.91 16 10 C 0.51 13.90 7.83 87.66 0.69 14.58 16 11 O -0.58 -22.09 15.73 -3.03 -0.05 -22.14 16 12 N -0.70 -18.25 5.23 -435.97 -2.28 -20.53 16 13 C 0.15 5.23 2.77 46.38 0.13 5.36 16 14 H 0.08 2.99 7.63 -2.39 -0.02 2.97 16 15 C 0.15 7.35 5.03 86.86 0.44 7.78 16 16 N -0.63 -32.67 3.33 -691.96 -2.30 -34.98 16 17 C -0.35 -20.77 9.97 84.03 0.84 -19.93 16 18 H 0.06 3.68 8.02 -2.91 -0.02 3.66 16 19 C -0.08 -4.51 4.96 84.86 0.42 -4.09 16 20 N -0.93 -59.32 12.86 21.65 0.28 -59.04 16 21 Si 1.11 53.55 30.03 68.60 2.06 55.61 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 C 0.13 5.27 6.85 86.73 0.59 5.86 16 26 C -0.09 -2.62 3.16 -9.60 -0.03 -2.65 16 27 H 0.10 2.43 8.00 -2.38 -0.02 2.41 16 28 C -0.13 -2.71 9.16 71.98 0.66 -2.05 16 29 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 1.77 8.10 -2.38 -0.02 1.75 16 33 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.42 7.42 8.52 -92.70 -0.79 6.64 16 37 H 0.00 0.11 7.81 -2.39 -0.02 0.10 16 38 H 0.01 0.32 7.02 -2.39 -0.02 0.30 16 39 H 0.25 16.29 6.43 -92.71 -0.60 15.70 16 40 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.03 1.31 7.77 -2.39 -0.02 1.29 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.05 1.13 8.07 -2.39 -0.02 1.11 16 Total: -1.00 -79.65 383.31 3.78 -75.87 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.41 Total: 8.80 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.54 Total: 0.99 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -4.90 Total: -122.94 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.75 Total: -19.30 kcal Atomic # 14 Polarization: 53.55 SS G_CDS: 2.06 Total: 55.61 kcal Atomic # 17 Polarization: 1.06 SS G_CDS: -0.08 Total: 0.98 kcal Total: -79.65 3.78 -75.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211418830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.207 kcal (2) G-P(sol) polarization free energy of solvation -79.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds