Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30829 * 125.96174 * 2 1 4 4 C 1.33241 * 109.82899 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52922 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47082 * 89.99663 * 5 4 3 7 7 C 1.47899 * 110.99641 * 170.00087 * 6 5 4 8 8 C 1.53999 * 107.05575 * 145.84559 * 7 6 5 9 9 H 1.09005 * 110.30511 * 117.78954 * 8 7 6 10 10 N 1.46499 * 110.30843 * 239.85763 * 8 7 6 11 11 C 1.34778 * 120.00278 * 272.20751 * 10 8 7 12 12 O 1.21278 * 119.99748 * 0.02562 * 11 10 8 13 13 C 1.50697 * 120.00209 * 180.02562 * 11 10 8 14 14 S 1.80999 * 109.47181 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99825 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99855 * 179.72221 * 15 14 13 18 18 N 1.31634 * 119.99756 * 0.27728 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 180.27923 * 17 15 14 20 20 H 1.48496 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99999 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00046 * 19 17 15 23 23 C 1.54594 * 105.22662 * 358.82664 * 8 7 6 24 24 H 1.09005 * 110.72383 * 96.34923 * 23 8 7 25 25 O 1.42897 * 110.72105 * 219.63429 * 23 8 7 26 26 C 1.48526 * 111.00214 * 287.39711 * 6 5 4 27 27 N 1.30720 * 108.94842 * 0.26404 * 4 3 2 28 28 N 1.34436 * 125.96120 * 180.02562 * 2 1 3 29 29 H 0.96999 * 126.81914 * 359.97438 * 28 2 1 30 30 H 1.08998 * 109.47094 * 90.00306 * 1 2 3 31 31 H 1.09007 * 109.47040 * 209.99974 * 1 2 3 32 32 H 1.08994 * 109.46941 * 329.99892 * 1 2 3 33 33 H 1.09003 * 109.46553 * 329.99915 * 5 4 3 34 34 H 1.09000 * 109.47038 * 209.99940 * 5 4 3 35 35 H 1.08999 * 109.91877 * 26.49335 * 7 6 5 36 36 H 1.09005 * 109.91905 * 265.19765 * 7 6 5 37 37 H 0.97000 * 119.99972 * 92.21106 * 10 8 7 38 38 H 1.08999 * 109.47278 * 59.99800 * 13 11 10 39 39 H 1.09002 * 109.46837 * 300.00183 * 13 11 10 40 40 H 0.97000 * 119.99219 * 179.97438 * 18 17 15 41 41 H 0.96706 * 113.99599 * 179.97438 * 25 23 8 42 42 H 1.08994 * 110.67335 * 318.71792 * 26 6 5 43 43 H 1.09000 * 110.66464 * 81.84559 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6235 -0.0002 6 7 5.1216 1.9264 1.3849 7 6 6.4145 2.6431 1.4315 8 6 6.3432 3.6269 2.6141 9 1 7.1014 3.3802 3.3575 10 7 6.5228 5.0023 2.1429 11 6 7.7619 5.5215 2.0354 12 8 8.7283 4.8499 2.3283 13 6 7.9466 6.9366 1.5512 14 16 9.7114 7.3368 1.5160 15 6 9.6370 8.9968 0.9299 16 1 8.6813 9.4511 0.7143 17 6 10.8065 9.7227 0.7513 18 7 11.9715 9.1692 1.0146 19 14 10.7273 11.4852 0.1374 20 1 9.3099 11.8692 -0.0835 21 1 11.3338 12.3890 1.1475 22 1 11.4752 11.5983 -1.1405 23 6 4.9284 3.4440 3.2097 24 1 4.9518 2.7573 4.0559 25 8 4.3750 4.7041 3.5943 26 6 4.1336 2.8314 2.0258 27 7 3.6194 -0.6169 -0.0066 28 7 2.2965 -1.0881 -0.0005 29 1 2.0093 -2.0147 -0.0006 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5138 33 1 4.4700 2.5473 -0.5134 34 1 5.5742 1.1512 -0.5145 35 1 6.5692 3.1907 0.5018 36 1 7.2271 1.9335 1.5872 37 1 5.7499 5.5394 1.9083 38 1 7.4317 7.6213 2.2251 39 1 7.5321 7.0342 0.5478 40 1 12.7887 9.6764 0.8894 41 1 3.4875 4.6445 3.9737 42 1 3.8171 3.6093 1.3310 43 1 3.2751 2.2673 2.3903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219216588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -18.136213 kcal Electronic energy + Delta-G solvation = -26597.058457 eV Core-core repulsion = 22611.263275 eV Total energy + Delta-G solvation = -3985.795182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.16506 -41.26714 -39.66733 -37.16148 -35.44368 -34.57747 -34.10976 -33.35467 -31.89197 -30.41401 -29.08762 -28.85993 -27.66599 -26.83908 -23.10702 -22.42512 -22.06310 -21.47958 -21.25144 -19.86769 -18.92906 -18.50383 -18.00041 -17.22553 -17.09561 -16.87397 -16.55366 -16.33437 -16.03387 -15.77385 -15.58803 -15.05846 -14.91375 -14.73405 -14.41813 -14.15639 -13.90312 -13.65660 -13.62369 -13.51792 -13.23222 -13.14683 -12.91048 -12.81967 -12.71417 -12.60616 -12.52029 -12.03919 -11.68561 -11.17278 -11.15152 -11.11803 -11.01490 -10.93627 -10.53605 -10.26790 -10.20489 -9.60760 -8.65452 -8.34166 -6.11823 0.56768 1.26970 1.41827 1.46741 1.58296 1.60010 1.68116 1.74913 2.20972 2.28452 2.76660 2.99858 3.00783 3.26819 3.33483 3.44178 3.50367 3.67031 3.90829 3.99339 4.10411 4.19035 4.28863 4.31168 4.37484 4.39994 4.51652 4.64067 4.71480 4.72328 4.81261 4.86823 4.91952 5.06724 5.25175 5.30186 5.38029 5.42957 5.66140 5.72030 6.20873 6.20919 6.51354 6.84233 7.07205 7.07421 7.25685 8.75319 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.001948 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.306708 B =14373.284082 C =14504.890530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.287 3.713 3 N -0.565 5.565 4 C 0.231 3.769 5 C 0.139 3.861 6 N -0.508 5.508 7 C 0.034 3.966 8 C 0.140 3.860 9 H 0.086 0.914 10 N -0.695 5.695 11 C 0.536 3.464 12 O -0.563 6.563 13 C -0.129 4.129 14 S -0.147 6.147 15 C -0.546 4.546 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.273 1.273 23 C 0.109 3.891 24 H 0.095 0.905 25 O -0.564 6.564 26 C 0.021 3.979 27 N -0.332 5.332 28 N -0.476 5.476 29 H 0.455 0.545 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.416 0.584 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.271 0.729 41 H 0.403 0.597 42 H 0.060 0.940 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.565 -19.825 -0.427 36.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.009 3.991 3 N -0.296 5.296 4 C -0.053 4.053 5 C 0.009 3.991 6 N -0.234 5.234 7 C -0.095 4.095 8 C 0.033 3.967 9 H 0.104 0.896 10 N -0.349 5.349 11 C 0.322 3.678 12 O -0.441 6.441 13 C -0.280 4.280 14 S 0.080 5.920 15 C -0.694 4.694 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.547 5.547 19 Si 0.821 3.179 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.199 1.199 23 C 0.048 3.952 24 H 0.113 0.887 25 O -0.372 6.372 26 C -0.107 4.107 27 N -0.162 5.162 28 N -0.196 5.196 29 H 0.303 0.697 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.253 0.747 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.254 0.746 42 H 0.079 0.921 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -27.641 -21.245 0.114 34.862 hybrid contribution -1.671 1.647 -1.035 2.564 sum -29.312 -19.599 -0.921 35.273 Atomic orbital electron populations 1.20638 0.80180 1.06541 1.05989 1.25241 0.98201 0.82050 0.93632 1.70356 1.01330 1.31088 1.26834 1.23967 0.93312 0.90096 0.97905 1.20419 0.92224 0.95978 0.90485 1.64662 1.02426 1.40629 1.15707 1.23265 0.92602 0.95759 0.97838 1.21836 0.97695 0.81438 0.95710 0.89551 1.45556 1.07340 1.14522 1.67449 1.20049 0.83279 0.87806 0.76645 1.90686 1.40893 1.62232 1.50255 1.23352 1.02763 0.96433 1.05435 1.85531 1.02315 1.16853 1.87267 1.23247 0.96348 0.98584 1.51252 0.90009 1.26138 0.93932 1.04144 0.94991 1.70193 0.98458 1.39175 1.46915 0.84895 0.79025 0.76088 0.77869 1.18089 1.19880 1.19879 1.22858 0.90327 0.85894 0.96120 0.88720 1.86445 1.37952 1.28645 1.84180 1.23901 0.95392 0.95054 0.96329 1.77967 0.98584 1.12706 1.26974 1.47970 1.03323 1.11080 1.57252 0.69679 0.87444 0.87052 0.88085 0.91010 0.88140 0.92653 0.89200 0.74671 0.87569 0.87401 0.91988 0.74571 0.92142 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.12 10.51 71.24 0.75 0.63 16 2 C 0.29 3.49 8.24 138.22 1.14 4.63 16 3 N -0.57 -10.77 11.19 -179.72 -2.01 -12.78 16 4 C 0.23 4.92 7.24 138.63 1.00 5.93 16 5 C 0.14 2.81 5.34 85.56 0.46 3.27 16 6 N -0.51 -10.34 5.23 -887.04 -4.64 -14.99 16 7 C 0.03 0.80 6.46 86.45 0.56 1.36 16 8 C 0.14 3.44 3.27 45.87 0.15 3.59 16 9 H 0.09 2.50 7.60 -2.38 -0.02 2.48 16 10 N -0.69 -19.42 4.63 -438.37 -2.03 -21.45 16 11 C 0.54 20.66 7.85 87.66 0.69 21.35 16 12 O -0.56 -26.52 15.54 -3.02 -0.05 -26.56 16 13 C -0.13 -5.33 6.16 71.23 0.44 -4.89 16 14 S -0.15 -8.32 20.57 -56.49 -1.16 -9.49 16 15 C -0.55 -31.81 9.50 67.96 0.65 -31.16 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.73 5.49 84.86 0.47 1.20 16 18 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 19 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.11 1.89 4.36 31.89 0.14 2.03 16 24 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 25 O -0.56 -9.01 12.08 -148.98 -1.80 -10.81 16 26 C 0.02 0.36 5.86 86.74 0.51 0.87 16 27 N -0.33 -7.10 12.80 -51.33 -0.66 -7.76 16 28 N -0.48 -6.06 7.45 -50.70 -0.38 -6.44 16 29 H 0.45 2.26 8.96 -213.10 -1.91 0.35 16 30 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.11 -0.42 8.14 -2.38 -0.02 -0.44 16 32 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.07 1.39 7.83 -2.39 -0.02 1.37 16 34 H 0.10 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.06 1.37 7.56 -2.39 -0.02 1.35 16 36 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.42 9.81 7.81 -92.71 -0.72 9.08 16 38 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 39 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.40 2.67 9.12 -74.05 -0.68 1.99 16 42 H 0.06 1.07 7.81 -2.39 -0.02 1.05 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -86.19 379.88 -5.70 -91.89 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -2.23 Total: 19.62 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 6.94 Total: 8.79 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -9.43 Total: -119.78 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.85 Total: -37.37 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.49 kcal Total: -86.19 -5.70 -91.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.754 kcal (2) G-P(sol) polarization free energy of solvation -86.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds