Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39308 * 119.68723 * 47.12855 * 3 2 1 5 5 C 1.39557 * 118.91924 * 180.02562 * 4 3 2 6 6 C 1.48488 * 120.86592 * 179.97438 * 5 4 3 7 7 N 1.30721 * 126.40629 * 359.96780 * 6 5 4 8 8 O 1.21285 * 110.10799 * 180.02562 * 7 6 5 9 9 C 1.33676 * 110.02055 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.44328 * 180.02562 * 9 8 7 11 11 O 1.42908 * 109.47081 * 270.01801 * 10 9 8 12 12 C 1.42900 * 113.99997 * 180.02562 * 11 10 9 13 13 C 1.53514 * 114.16934 * 150.00256 * 12 11 10 14 14 N 1.47483 * 87.92777 * 87.81254 * 13 12 11 15 15 C 1.46903 * 110.99717 * 138.70421 * 14 13 12 16 16 C 1.50694 * 109.47066 * 169.99804 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47480 * 87.83900 * 27.00973 * 14 13 12 25 25 N 1.30972 * 107.10664 * 0.26058 * 9 8 7 26 26 C 1.39742 * 118.27561 * 0.24131 * 5 4 3 27 27 C 1.38293 * 119.25001 * 359.52854 * 26 5 4 28 28 N 1.31605 * 121.03051 * 0.48891 * 27 26 5 29 29 H 1.08003 * 120.54199 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.47110 * 150.02614 * 10 9 8 31 31 H 1.08996 * 109.47699 * 30.01999 * 10 9 8 32 32 H 1.09004 * 113.25466 * 17.04971 * 12 11 10 33 33 H 1.09000 * 113.47331 * 333.04932 * 13 12 11 34 34 H 1.08995 * 113.52785 * 202.58522 * 13 12 11 35 35 H 1.09007 * 109.47052 * 49.99488 * 15 14 13 36 36 H 1.09003 * 109.46808 * 290.00181 * 15 14 13 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.09004 * 113.47132 * 87.75237 * 24 14 13 39 39 H 1.09000 * 113.47538 * 218.21976 * 24 14 13 40 40 H 1.08002 * 120.37514 * 179.75349 * 26 5 4 41 41 H 1.08000 * 119.48301 * 180.20299 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2583 -0.8224 -0.8870 5 6 4.6538 -0.8095 -0.8729 6 6 5.4329 -1.6697 -1.7990 7 7 4.9445 -2.4953 -2.6871 8 8 5.8451 -3.0484 -3.2821 9 6 7.0261 -2.6225 -2.8231 10 6 8.3848 -3.0660 -3.3007 11 8 8.8140 -4.1939 -2.5353 12 6 10.0986 -4.6956 -2.9097 13 6 10.8795 -5.3453 -1.7587 14 7 10.2060 -6.6149 -2.0895 15 6 11.1436 -7.7433 -2.0145 16 6 10.3798 -9.0385 -2.1145 17 1 9.3053 -9.0249 -2.2225 18 6 11.0527 -10.2411 -2.0671 19 7 12.3611 -10.2577 -1.9351 20 14 10.1059 -11.8466 -2.1903 21 1 9.7142 -12.2960 -0.8302 22 1 8.8873 -11.6407 -3.0137 23 1 10.9635 -12.8795 -2.8251 24 6 10.0806 -6.1230 -3.4742 25 7 6.7802 -1.7510 -1.8768 26 6 5.2988 0.0299 0.0394 27 6 4.5404 0.8202 0.8836 28 7 3.2253 0.7854 0.8461 29 1 2.7223 -1.4602 -1.5743 30 1 9.0975 -2.2506 -3.1769 31 1 8.3277 -3.3419 -4.3536 32 1 10.6809 -3.9890 -3.5013 33 1 10.6115 -4.9544 -0.7771 34 1 11.9568 -5.3696 -1.9230 35 1 11.6782 -7.7090 -1.0652 36 1 11.8572 -7.6779 -2.8359 37 1 12.8344 -11.1037 -1.9014 38 1 10.9446 -6.3546 -4.0971 39 1 9.1355 -6.3914 -3.9464 40 1 6.3774 0.0637 0.0821 41 1 5.0350 1.4727 1.5878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222802229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = 152.705923 kcal Electronic energy + Delta-G solvation = -26787.839024 eV Core-core repulsion = 22674.008161 eV Total energy + Delta-G solvation = -4113.830862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.05292 -41.01201 -39.79857 -37.17429 -37.08125 -36.43416 -34.15880 -32.88894 -32.42897 -32.19338 -29.45025 -27.84236 -26.21302 -25.54425 -25.15758 -24.99153 -23.97058 -22.24762 -21.80141 -19.93723 -19.71326 -18.56369 -18.00613 -17.20952 -16.77328 -16.72422 -16.31317 -16.03653 -15.79969 -15.34105 -15.32233 -14.90468 -14.53724 -14.19396 -13.96539 -13.83855 -13.55565 -13.50301 -13.35157 -13.06608 -12.66603 -12.61860 -12.48818 -12.25129 -11.95803 -11.60854 -11.35884 -11.30235 -11.09219 -10.87849 -10.54109 -10.46924 -10.31492 -10.00791 -9.87498 -9.73355 -9.49658 -9.29047 -8.45602 -7.88057 -6.06429 -4.07275 -0.23202 0.05049 0.70685 1.74457 1.97250 2.20886 2.37714 2.63641 2.98794 3.26006 3.26607 3.31056 3.36855 3.41427 3.64670 3.97047 4.13511 4.20312 4.38351 4.41198 4.55206 4.57530 4.69968 4.85569 4.86595 4.89548 4.96203 5.10582 5.14885 5.29117 5.36993 5.47148 5.65160 5.71062 5.86172 6.03702 6.13277 6.26436 6.59559 6.80092 7.00540 7.02996 7.13000 7.58697 7.62073 7.83266 8.07010 8.42837 9.00653 9.57099 11.04600 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.001790 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.163565 B =15640.879717 C =16410.208591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C 0.266 3.734 3 C 0.196 3.804 4 C -0.088 4.088 5 C 0.035 3.965 6 C 0.197 3.803 7 N -0.358 5.358 8 O 0.105 5.895 9 C 0.206 3.794 10 C 0.150 3.850 11 O -0.342 6.342 12 C 0.055 3.945 13 C -0.005 4.005 14 N -0.457 5.457 15 C 0.156 3.844 16 C -0.504 4.504 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.287 1.287 24 C -0.008 4.008 25 N -0.452 5.452 26 C -0.101 4.101 27 C 0.115 3.885 28 N -0.441 5.441 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.004 0.996 37 H 0.261 0.739 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.161 0.839 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 24.925 -1.843 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.057 5.057 2 C -0.051 4.051 3 C 0.058 3.942 4 C -0.113 4.113 5 C 0.025 3.975 6 C -0.073 4.073 7 N -0.060 5.060 8 O 0.039 5.961 9 C -0.015 4.015 10 C 0.072 3.928 11 O -0.259 6.259 12 C -0.002 4.002 13 C -0.135 4.135 14 N -0.181 5.181 15 C 0.030 3.970 16 C -0.543 4.543 17 H 0.082 0.918 18 C -0.147 4.147 19 N -0.540 5.540 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.137 4.137 25 N -0.186 5.186 26 C -0.123 4.123 27 C -0.045 4.045 28 N -0.152 5.152 29 H 0.173 0.827 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.178 0.822 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.391 25.125 -0.534 28.020 hybrid contribution 1.645 -1.482 -1.226 2.531 sum -10.747 23.643 -1.760 26.030 Atomic orbital electron populations 1.81288 1.11348 1.06561 1.06499 1.24817 0.91480 0.94424 0.94412 1.16082 0.86349 0.96402 0.95368 1.22026 0.93168 0.97840 0.98237 1.17421 0.91139 0.94837 0.94070 1.23512 0.87683 0.98338 0.97779 1.74914 1.12242 1.09725 1.09141 1.85344 1.12561 1.49987 1.48221 1.28320 0.91483 0.91053 0.90662 1.20729 0.84229 0.91772 0.96099 1.88068 1.35440 1.44600 1.57808 1.23433 0.83308 0.94982 0.98522 1.24047 0.96994 0.93370 0.99046 1.69078 1.37153 1.01457 1.10362 1.20300 0.90689 0.89153 0.96853 1.21103 0.94183 0.89760 1.49208 0.91837 1.25007 0.94916 0.99390 0.95426 1.69951 1.06863 1.26415 1.50817 0.86476 0.79696 0.82839 0.78292 1.20607 1.19810 1.21298 1.24254 1.02596 0.92294 0.94593 1.71954 1.11741 1.18789 1.16105 1.22583 1.03326 0.93388 0.93022 1.22852 0.87688 0.96833 0.97102 1.67501 1.11027 1.17803 1.18891 0.82737 0.88075 0.88810 0.90081 0.89912 0.90729 0.95278 0.97842 0.92922 0.90739 0.89981 0.82157 0.80279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -4.31 18.54 41.84 0.78 -3.53 16 2 C 0.27 2.50 15.53 -22.47 -0.35 2.15 16 3 C 0.20 1.55 6.58 -85.12 -0.56 0.99 16 4 C -0.09 -0.66 9.47 -38.69 -0.37 -1.03 16 5 C 0.03 0.28 5.91 -104.62 -0.62 -0.34 16 6 C 0.20 2.01 7.83 -156.14 -1.22 0.79 16 7 N -0.36 -4.02 11.95 30.96 0.37 -3.65 16 8 O 0.10 1.14 11.29 18.02 0.20 1.34 16 9 C 0.21 2.05 8.13 -13.00 -0.11 1.94 16 10 C 0.15 1.21 6.40 36.00 0.23 1.44 16 11 O -0.34 -4.40 10.38 -35.23 -0.37 -4.77 16 12 C 0.06 0.71 4.65 -26.20 -0.12 0.58 16 13 C -0.01 -0.08 7.52 -7.53 -0.06 -0.14 16 14 N -0.46 -9.60 6.32 -246.08 -1.55 -11.16 16 15 C 0.16 3.96 4.57 -4.98 -0.02 3.93 16 16 C -0.50 -14.24 9.39 -34.44 -0.32 -14.56 16 17 H 0.06 1.82 7.81 -52.49 -0.41 1.40 16 18 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 20 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.01 -0.13 7.56 -7.54 -0.06 -0.19 16 25 N -0.45 -4.71 11.35 -9.89 -0.11 -4.83 16 26 C -0.10 -0.58 9.80 -39.00 -0.38 -0.96 16 27 C 0.11 0.58 11.17 -17.63 -0.20 0.38 16 28 N -0.44 -3.37 10.26 -11.23 -0.12 -3.49 16 29 H 0.15 1.05 7.95 -52.48 -0.42 0.64 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.12 7.91 -51.93 -0.41 0.71 16 35 H 0.03 0.79 8.08 -51.92 -0.42 0.37 16 36 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 1.21 7.42 -51.93 -0.39 0.83 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.16 0.72 7.96 -52.49 -0.42 0.30 16 41 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -34.55 375.43 -8.17 -42.73 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: -4.50 Total: -5.70 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -4.25 Total: -3.58 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.10 Total: -52.34 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.16 Total: -3.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.55 -8.17 -42.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222802229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.431 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds