Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39308 * 119.68723 * 47.12855 * 3 2 1 5 5 C 1.39557 * 118.91924 * 180.02562 * 4 3 2 6 6 C 1.48488 * 120.86592 * 179.97438 * 5 4 3 7 7 N 1.30721 * 126.40629 * 359.96780 * 6 5 4 8 8 O 1.21285 * 110.10799 * 180.02562 * 7 6 5 9 9 C 1.33676 * 110.02055 * 0.02562 * 8 7 6 10 10 C 1.50693 * 126.44328 * 180.02562 * 9 8 7 11 11 O 1.42908 * 109.47081 * 270.01801 * 10 9 8 12 12 C 1.42900 * 113.99997 * 180.02562 * 11 10 9 13 13 C 1.53514 * 114.16934 * 150.00256 * 12 11 10 14 14 N 1.47483 * 87.92777 * 87.81254 * 13 12 11 15 15 C 1.46903 * 110.99717 * 138.70421 * 14 13 12 16 16 C 1.50694 * 109.47066 * 169.99804 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47480 * 87.83900 * 27.00973 * 14 13 12 25 25 N 1.30972 * 107.10664 * 0.26058 * 9 8 7 26 26 C 1.39742 * 118.27561 * 0.24131 * 5 4 3 27 27 C 1.38293 * 119.25001 * 359.52854 * 26 5 4 28 28 N 1.31605 * 121.03051 * 0.48891 * 27 26 5 29 29 H 1.08003 * 120.54199 * 0.02562 * 4 3 2 30 30 H 1.09003 * 109.47110 * 150.02614 * 10 9 8 31 31 H 1.08996 * 109.47699 * 30.01999 * 10 9 8 32 32 H 1.09004 * 113.25466 * 17.04971 * 12 11 10 33 33 H 1.09000 * 113.47331 * 333.04932 * 13 12 11 34 34 H 1.08995 * 113.52785 * 202.58522 * 13 12 11 35 35 H 1.09007 * 109.47052 * 49.99488 * 15 14 13 36 36 H 1.09003 * 109.46808 * 290.00181 * 15 14 13 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.09004 * 113.47132 * 87.75237 * 24 14 13 39 39 H 1.09000 * 113.47538 * 218.21976 * 24 14 13 40 40 H 1.08002 * 120.37514 * 179.75349 * 26 5 4 41 41 H 1.08000 * 119.48301 * 180.20299 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2583 -0.8224 -0.8870 5 6 4.6538 -0.8095 -0.8729 6 6 5.4329 -1.6697 -1.7990 7 7 4.9445 -2.4953 -2.6871 8 8 5.8451 -3.0484 -3.2821 9 6 7.0261 -2.6225 -2.8231 10 6 8.3848 -3.0660 -3.3007 11 8 8.8140 -4.1939 -2.5353 12 6 10.0986 -4.6956 -2.9097 13 6 10.8795 -5.3453 -1.7587 14 7 10.2060 -6.6149 -2.0895 15 6 11.1436 -7.7433 -2.0145 16 6 10.3798 -9.0385 -2.1145 17 1 9.3053 -9.0249 -2.2225 18 6 11.0527 -10.2411 -2.0671 19 7 12.3611 -10.2577 -1.9351 20 14 10.1059 -11.8466 -2.1903 21 1 9.7142 -12.2960 -0.8302 22 1 8.8873 -11.6407 -3.0137 23 1 10.9635 -12.8795 -2.8251 24 6 10.0806 -6.1230 -3.4742 25 7 6.7802 -1.7510 -1.8768 26 6 5.2988 0.0299 0.0394 27 6 4.5404 0.8202 0.8836 28 7 3.2253 0.7854 0.8461 29 1 2.7223 -1.4602 -1.5743 30 1 9.0975 -2.2506 -3.1769 31 1 8.3277 -3.3419 -4.3536 32 1 10.6809 -3.9890 -3.5013 33 1 10.6115 -4.9544 -0.7771 34 1 11.9568 -5.3696 -1.9230 35 1 11.6782 -7.7090 -1.0652 36 1 11.8572 -7.6779 -2.8359 37 1 12.8344 -11.1037 -1.9014 38 1 10.9446 -6.3546 -4.0971 39 1 9.1355 -6.3914 -3.9464 40 1 6.3774 0.0637 0.0821 41 1 5.0350 1.4727 1.5878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222802229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = 125.290969 kcal Electronic energy + Delta-G solvation = -26789.027825 eV Core-core repulsion = 22674.008161 eV Total energy + Delta-G solvation = -4115.019664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.81069 -41.55827 -41.04059 -38.13575 -37.90433 -37.18807 -35.08792 -34.73144 -33.05300 -32.83687 -31.09222 -28.73073 -27.07344 -26.84850 -26.63315 -25.62422 -24.66198 -23.59110 -22.87070 -20.91376 -20.60047 -19.37010 -18.74097 -18.53376 -17.89485 -17.50472 -17.30105 -17.03990 -16.60943 -16.50301 -16.12821 -15.96490 -15.60545 -15.35543 -15.09538 -14.93022 -14.52015 -14.26941 -14.15625 -14.08956 -13.88751 -13.54683 -13.41875 -13.31325 -13.19605 -12.97170 -12.78118 -12.45878 -12.33384 -12.29809 -11.94221 -11.91306 -11.42591 -11.22594 -11.00173 -10.66054 -10.61436 -10.51093 -10.40060 -9.47666 -8.22441 -6.31742 -0.82997 -0.51909 -0.00472 1.06707 1.25540 1.39311 1.40506 1.51886 1.52539 1.69609 1.97576 2.33736 2.39381 2.55277 2.68322 2.83016 3.09647 3.44428 3.47890 3.51645 3.61351 3.66344 3.81386 4.03088 4.07700 4.13432 4.31306 4.37639 4.46220 4.50849 4.52685 4.61311 4.73717 4.75616 4.79841 4.91547 4.93505 5.07384 5.09818 5.27998 5.61137 5.86387 6.09241 6.09642 6.19404 6.51241 6.53812 6.83153 6.84309 7.37754 8.88124 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.001790 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.163565 B =15640.879717 C =16410.208591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.286 3.714 3 C 0.185 3.815 4 C -0.084 4.084 5 C 0.015 3.985 6 C 0.197 3.803 7 N -0.380 5.380 8 O 0.092 5.908 9 C 0.204 3.796 10 C 0.146 3.854 11 O -0.373 6.373 12 C 0.094 3.906 13 C -0.012 4.012 14 N -0.495 5.495 15 C 0.172 3.828 16 C -0.526 4.526 17 H 0.052 0.948 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.966 3.034 21 H -0.275 1.275 22 H -0.268 1.268 23 H -0.277 1.277 24 C -0.016 4.016 25 N -0.460 5.460 26 C -0.084 4.084 27 C 0.126 3.874 28 N -0.456 5.456 29 H 0.154 0.846 30 H 0.136 0.864 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.080 0.920 34 H 0.084 0.916 35 H -0.002 1.002 36 H -0.011 1.011 37 H 0.265 0.735 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.178 0.822 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 26.560 -2.182 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.031 4.031 3 C 0.049 3.951 4 C -0.108 4.108 5 C 0.006 3.994 6 C -0.073 4.073 7 N -0.085 5.085 8 O 0.029 5.971 9 C -0.017 4.017 10 C 0.068 3.932 11 O -0.291 6.291 12 C 0.036 3.964 13 C -0.141 4.141 14 N -0.218 5.218 15 C 0.045 3.955 16 C -0.565 4.565 17 H 0.071 0.929 18 C -0.195 4.195 19 N -0.571 5.571 20 Si 0.790 3.210 21 H -0.201 1.201 22 H -0.192 1.192 23 H -0.203 1.203 24 C -0.146 4.146 25 N -0.194 5.194 26 C -0.106 4.106 27 C -0.033 4.033 28 N -0.168 5.168 29 H 0.172 0.828 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.016 0.984 36 H 0.006 0.994 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.195 0.805 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.737 26.770 -0.892 29.244 hybrid contribution 1.485 -1.892 -1.075 2.634 sum -10.252 24.879 -1.967 26.980 Atomic orbital electron populations 1.81292 1.12498 1.08087 1.07997 1.25048 0.91744 0.93174 0.93164 1.15958 0.85541 0.97381 0.96264 1.21966 0.93200 0.97610 0.98029 1.17558 0.91192 0.95784 0.94915 1.23879 0.87923 0.97963 0.97531 1.74905 1.12810 1.10674 1.10075 1.85318 1.12957 1.50286 1.48559 1.28814 0.91904 0.90641 0.90298 1.21210 0.83629 0.91388 0.96937 1.88004 1.35504 1.46454 1.59095 1.23118 0.83447 0.93986 0.95869 1.24143 0.97908 0.91390 1.00651 1.68968 1.36816 1.02083 1.13889 1.19948 0.90687 0.90417 0.94444 1.21435 0.93924 0.91619 1.49499 0.92940 1.25868 0.95858 1.02913 0.94849 1.70054 1.08260 1.27471 1.51358 0.85439 0.78516 0.78545 0.78460 1.20104 1.19220 1.20262 1.24345 1.02331 0.95361 0.92521 1.71954 1.11729 1.19322 1.16421 1.22840 1.04192 0.91938 0.91646 1.23482 0.86634 0.96346 0.96849 1.67531 1.12366 1.17910 1.18946 0.82789 0.84610 0.85740 0.84392 0.90133 0.89814 0.98354 0.99355 0.92606 0.90502 0.90639 0.80459 0.76426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.81 18.54 19.00 0.35 -9.46 16 2 C 0.29 5.42 15.53 88.33 1.37 6.79 16 3 C 0.19 2.82 6.58 40.50 0.27 3.09 16 4 C -0.08 -1.21 9.47 22.85 0.22 -1.00 16 5 C 0.01 0.22 5.91 -19.86 -0.12 0.10 16 6 C 0.20 3.82 7.83 137.33 1.08 4.90 16 7 N -0.38 -8.39 11.95 -59.21 -0.71 -9.10 16 8 O 0.09 1.93 11.29 74.55 0.84 2.77 16 9 C 0.20 3.66 8.13 88.36 0.72 4.37 16 10 C 0.15 1.80 6.40 71.23 0.46 2.25 16 11 O -0.37 -8.55 10.38 -148.98 -1.55 -10.10 16 12 C 0.09 2.09 4.65 30.94 0.14 2.24 16 13 C -0.01 -0.36 7.52 83.58 0.63 0.27 16 14 N -0.49 -20.93 6.32 -932.86 -5.89 -26.82 16 15 C 0.17 9.00 4.57 85.55 0.39 9.39 16 16 C -0.53 -30.47 9.39 25.60 0.24 -30.23 16 17 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 18 C 0.00 0.19 5.46 84.66 0.46 0.65 16 19 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 20 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 C -0.02 -0.52 7.56 83.58 0.63 0.11 16 25 N -0.46 -8.71 11.35 -302.58 -3.43 -12.14 16 26 C -0.08 -0.75 9.80 22.65 0.22 -0.53 16 27 C 0.13 0.90 11.17 84.74 0.95 1.85 16 28 N -0.46 -6.20 10.26 -189.45 -1.94 -8.14 16 29 H 0.15 2.16 7.95 -2.91 -0.02 2.14 16 30 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.14 1.62 7.88 -2.38 -0.02 1.60 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.08 2.43 7.91 -2.39 -0.02 2.41 16 35 H 0.00 -0.09 8.08 -2.38 -0.02 -0.11 16 36 H -0.01 -0.61 7.30 -2.39 -0.02 -0.62 16 37 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.08 2.43 7.42 -2.39 -0.02 2.41 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.18 1.00 7.96 -2.91 -0.02 0.98 16 41 H 0.22 -0.23 8.06 -2.91 -0.02 -0.25 16 Total: -1.00 -78.50 375.43 -1.28 -79.78 By element: Atomic # 1 Polarization: -3.76 SS G_CDS: 1.09 Total: -2.67 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 7.65 Total: 4.26 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -11.34 Total: -120.82 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.70 Total: -7.33 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -78.50 -1.28 -79.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222802229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.071 kcal (2) G-P(sol) polarization free energy of solvation -78.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds