Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30219 * 126.79120 * 2 1 4 4 O 1.20918 * 111.64196 * 180.28384 * 3 2 1 5 5 C 1.34059 * 111.56017 * 359.70568 * 4 3 2 6 6 Cl 1.73602 * 126.80105 * 180.02562 * 5 4 3 7 7 C 1.35684 * 106.40298 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.01064 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46851 * 90.03011 * 8 7 5 10 10 C 1.50702 * 109.47078 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99936 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99736 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99345 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46688 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.47233 * 179.97438 * 14 13 12 16 16 C 1.36932 * 119.99658 * 270.00254 * 15 14 13 17 17 H 1.08007 * 119.99764 * 140.88669 * 16 15 14 18 18 C 1.38803 * 120.00467 * 320.87870 * 16 15 14 19 19 N 1.31623 * 120.00401 * 156.83307 * 18 16 15 20 20 Si 1.86799 * 119.99971 * 336.83548 * 18 16 15 21 21 H 1.48501 * 109.47564 * 92.01949 * 20 18 16 22 22 H 1.48501 * 109.47267 * 212.02120 * 20 18 16 23 23 H 1.48498 * 109.47067 * 332.01838 * 20 18 16 24 24 C 1.46503 * 119.99803 * 89.99867 * 15 14 13 25 25 C 1.52996 * 117.49592 * 184.01656 * 24 15 14 26 26 C 1.52998 * 117.49526 * 115.39583 * 24 15 14 27 27 H 1.09001 * 109.47285 * 270.19759 * 1 2 3 28 28 H 1.09001 * 109.47310 * 30.20337 * 1 2 3 29 29 H 1.09002 * 109.47239 * 150.20044 * 1 2 3 30 30 H 1.08992 * 109.47826 * 330.02987 * 8 7 5 31 31 H 1.09004 * 109.47023 * 210.02560 * 8 7 5 32 32 H 1.09004 * 109.47079 * 59.99820 * 9 8 7 33 33 H 1.08997 * 109.46948 * 299.99963 * 9 8 7 34 34 H 0.97001 * 120.00005 * 359.73274 * 12 10 9 35 35 H 1.08998 * 109.46993 * 299.99528 * 13 12 10 36 36 H 1.08999 * 109.46979 * 60.00732 * 13 12 10 37 37 H 1.08997 * 109.46948 * 300.00198 * 14 13 12 38 38 H 1.09004 * 109.47079 * 60.00055 * 14 13 12 39 39 H 0.97001 * 120.00424 * 180.02562 * 19 18 16 40 40 H 1.08997 * 115.55139 * 329.72385 * 24 15 14 41 41 H 1.08997 * 117.50169 * 0.02562 * 25 24 15 42 42 H 1.09000 * 117.49517 * 145.02140 * 25 24 15 43 43 H 1.08997 * 117.49450 * 214.97733 * 26 24 15 44 44 H 1.08998 * 117.49995 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7268 -0.0056 5 6 3.6037 -0.6054 -0.0037 6 17 5.1012 -1.4836 -0.0093 7 6 2.3530 -1.1315 0.0046 8 6 1.9580 -2.5858 0.0093 9 6 1.8322 -3.0753 1.4534 10 6 1.4366 -4.5295 1.4582 11 8 1.2720 -5.1166 0.4098 12 7 1.2667 -5.1778 2.6276 13 6 0.8826 -6.5915 2.6321 14 6 0.7566 -7.0811 4.0762 15 7 0.3720 -8.4947 4.0809 16 6 -0.9520 -8.8439 4.0888 17 1 -1.2923 -9.6844 3.5021 18 6 -1.8568 -8.1178 4.8509 19 7 -3.1356 -8.1257 4.5390 20 14 -1.2598 -7.1293 6.3191 21 1 -0.9529 -5.7413 5.8898 22 1 -2.3175 -7.1027 7.3611 23 1 -0.0343 -7.7582 6.8739 24 6 1.4039 -9.5346 4.0771 25 6 0.9400 -10.9898 3.9872 26 6 1.4951 -10.4437 5.3043 27 1 -0.3634 0.0035 1.0277 28 1 -0.3634 0.8882 -0.5170 29 1 -0.3634 -0.8918 -0.5107 30 1 2.7187 -3.1707 -0.5076 31 1 1.0011 -2.7040 -0.4991 32 1 1.0714 -2.4904 1.9704 33 1 2.7890 -2.9571 1.9618 34 1 1.4028 -4.7094 3.4660 35 1 -0.0745 -6.7097 2.1240 36 1 1.6433 -7.1763 2.1149 37 1 1.7135 -6.9628 4.5847 38 1 -0.0042 -6.4962 4.5931 39 1 -3.7678 -7.6180 5.0713 40 1 2.3351 -9.2710 3.5757 41 1 -0.1329 -11.1734 3.9305 42 1 1.5660 -11.6838 3.4264 43 1 2.4863 -10.7786 5.6099 44 1 0.7877 -10.2679 6.1146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267337913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = 66.237079 kcal Electronic energy + Delta-G solvation = -26728.194650 eV Core-core repulsion = 22711.721711 eV Total energy + Delta-G solvation = -4016.472939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -45.43083 -39.56755 -37.62847 -37.41251 -36.18859 -34.96331 -33.44956 -33.24733 -31.51427 -30.87807 -29.13078 -28.05793 -25.52011 -24.18498 -22.44977 -21.90220 -21.60390 -21.38403 -20.23692 -19.67790 -18.25414 -18.06732 -17.17091 -16.24230 -16.08939 -15.88152 -15.60673 -15.31430 -15.01010 -14.31676 -13.96130 -13.80117 -13.72161 -13.51162 -13.20351 -13.01068 -12.88373 -12.84190 -12.62385 -12.48271 -12.26839 -12.14363 -11.91243 -11.71435 -11.49212 -11.10606 -10.93627 -10.78482 -10.48242 -10.33054 -10.10979 -9.98237 -9.79393 -9.58184 -9.53455 -9.44147 -8.75160 -8.57619 -6.85459 -6.12864 -3.56879 0.68986 0.81606 1.66928 2.80170 3.14732 3.18146 3.36013 3.39886 3.41869 3.66899 4.17841 4.38558 4.42352 4.56187 4.73499 4.76441 4.85534 4.96988 5.04645 5.15256 5.16460 5.24902 5.31058 5.37990 5.64266 5.69043 5.72625 5.73334 5.75315 5.89708 5.93959 6.02032 6.12581 6.38121 6.40456 6.55268 6.64845 6.79409 6.88628 7.06586 7.68118 7.71138 7.92630 8.29878 8.41140 8.85338 9.56569 9.95648 11.01636 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.002371 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.206998 B =11807.778396 C =12790.479232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.035 3.965 3 N -0.348 5.348 4 O 0.109 5.891 5 C -0.002 4.002 6 Cl 0.050 6.950 7 C -0.162 4.162 8 C -0.030 4.030 9 C -0.137 4.137 10 C 0.510 3.490 11 O -0.542 6.542 12 N -0.725 5.725 13 C 0.100 3.900 14 C 0.129 3.871 15 N -0.568 5.568 16 C -0.274 4.274 17 H 0.084 0.916 18 C 0.042 3.958 19 N -0.891 5.891 20 Si 0.873 3.127 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.266 1.266 24 C 0.118 3.882 25 C -0.187 4.187 26 C -0.222 4.222 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.396 0.604 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.265 0.735 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.661 15.053 -6.436 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 N -0.054 5.054 4 O 0.042 5.958 5 C -0.092 4.092 6 Cl 0.078 6.922 7 C -0.167 4.167 8 C -0.068 4.068 9 C -0.177 4.177 10 C 0.295 3.705 11 O -0.420 6.420 12 N -0.376 5.376 13 C -0.025 4.025 14 C 0.002 3.998 15 N -0.286 5.286 16 C -0.402 4.402 17 H 0.102 0.898 18 C -0.160 4.160 19 N -0.530 5.530 20 Si 0.703 3.297 21 H -0.213 1.213 22 H -0.227 1.227 23 H -0.191 1.191 24 C 0.010 3.990 25 C -0.225 4.225 26 C -0.263 4.263 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.229 0.771 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.235 15.891 -7.150 21.882 hybrid contribution 0.452 -0.054 1.429 1.500 sum 13.687 15.837 -5.720 21.700 Atomic orbital electron populations 1.20279 0.84992 1.04432 1.04088 1.23399 0.99274 0.87787 1.01871 1.73961 0.88536 1.22976 1.19956 1.84912 1.22130 1.20741 1.68047 1.24621 0.91099 0.84915 1.08542 1.98467 1.28146 1.68867 1.96697 1.20935 0.89761 0.98464 1.07550 1.19717 1.04316 0.86319 0.96440 1.21639 1.03935 0.93861 0.98312 1.20444 0.77385 0.88594 0.84046 1.90713 1.51024 1.68866 1.31380 1.46118 1.70068 1.13348 1.08106 1.22246 1.00980 0.78430 1.00849 1.21373 0.98693 0.86578 0.93139 1.43516 1.02488 0.98371 1.84272 1.18729 0.80638 1.17225 1.23646 0.89827 1.25521 0.94871 0.98188 0.97444 1.69876 1.02322 1.42105 1.38721 0.87043 0.78599 0.79457 0.84633 1.21253 1.22714 1.19082 1.21186 0.92795 0.86437 0.98617 1.23069 1.02204 0.96902 1.00356 1.23369 1.00714 1.08678 0.93541 0.89519 0.90118 0.89263 0.89101 0.88774 0.88665 0.88867 0.77062 0.90505 0.92171 0.93561 0.91932 0.92497 0.88978 0.87817 0.90381 0.90759 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.39 36.00 0.37 -0.20 16 2 C 0.04 0.34 7.32 -82.12 -0.60 -0.26 16 3 N -0.35 -3.86 12.07 33.44 0.40 -3.46 16 4 O 0.11 1.15 11.20 17.13 0.19 1.34 16 5 C 0.00 -0.02 8.12 29.82 0.24 0.22 16 6 Cl 0.05 0.40 29.23 -51.86 -1.52 -1.12 16 7 C -0.16 -1.53 5.58 -104.38 -0.58 -2.11 16 8 C -0.03 -0.29 4.90 -27.88 -0.14 -0.42 16 9 C -0.14 -1.31 5.68 -27.88 -0.16 -1.47 16 10 C 0.51 7.15 7.83 -10.98 -0.09 7.06 16 11 O -0.54 -9.75 15.98 5.56 0.09 -9.66 16 12 N -0.73 -10.38 5.56 -60.29 -0.33 -10.72 16 13 C 0.10 1.81 6.00 -4.04 -0.02 1.79 16 14 C 0.13 2.50 4.68 -4.04 -0.02 2.48 16 15 N -0.57 -12.62 2.38 -165.66 -0.39 -13.02 16 16 C -0.27 -7.20 8.93 -15.06 -0.13 -7.34 16 17 H 0.08 2.40 6.85 -52.48 -0.36 2.04 16 18 C 0.04 1.13 5.28 -17.43 -0.09 1.04 16 19 N -0.89 -25.98 13.97 55.49 0.78 -25.21 16 20 Si 0.87 20.73 25.32 -169.99 -4.30 16.43 16 21 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 22 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.12 2.28 6.57 -67.93 -0.45 1.83 16 25 C -0.19 -3.47 9.80 -26.73 -0.26 -3.73 16 26 C -0.22 -4.08 10.35 -26.73 -0.28 -4.36 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.56 7.65 -51.93 -0.40 0.16 16 30 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.09 0.93 7.60 -51.93 -0.39 0.53 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 4.57 8.47 -40.82 -0.35 4.22 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.06 1.33 3.45 -51.93 -0.18 1.15 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.10 2.18 6.44 -51.93 -0.33 1.84 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -31.38 384.23 -7.75 -39.13 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.25 Total: 5.96 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.20 Total: -5.47 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.45 Total: -52.40 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.28 Total: -8.32 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.30 Total: 16.43 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -1.52 Total: -1.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.38 -7.75 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267337913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.364 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds