Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30219 * 126.79120 * 2 1 4 4 O 1.20918 * 111.64196 * 180.28384 * 3 2 1 5 5 C 1.34059 * 111.56017 * 359.70568 * 4 3 2 6 6 Cl 1.73602 * 126.80105 * 180.02562 * 5 4 3 7 7 C 1.35684 * 106.40298 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.01064 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46851 * 90.03011 * 8 7 5 10 10 C 1.50702 * 109.47078 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99936 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99736 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99345 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46688 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.47233 * 179.97438 * 14 13 12 16 16 C 1.36932 * 119.99658 * 270.00254 * 15 14 13 17 17 H 1.08007 * 119.99764 * 140.88669 * 16 15 14 18 18 C 1.38803 * 120.00467 * 320.87870 * 16 15 14 19 19 N 1.31623 * 120.00401 * 156.83307 * 18 16 15 20 20 Si 1.86799 * 119.99971 * 336.83548 * 18 16 15 21 21 H 1.48501 * 109.47564 * 92.01949 * 20 18 16 22 22 H 1.48501 * 109.47267 * 212.02120 * 20 18 16 23 23 H 1.48498 * 109.47067 * 332.01838 * 20 18 16 24 24 C 1.46503 * 119.99803 * 89.99867 * 15 14 13 25 25 C 1.52996 * 117.49592 * 184.01656 * 24 15 14 26 26 C 1.52998 * 117.49526 * 115.39583 * 24 15 14 27 27 H 1.09001 * 109.47285 * 270.19759 * 1 2 3 28 28 H 1.09001 * 109.47310 * 30.20337 * 1 2 3 29 29 H 1.09002 * 109.47239 * 150.20044 * 1 2 3 30 30 H 1.08992 * 109.47826 * 330.02987 * 8 7 5 31 31 H 1.09004 * 109.47023 * 210.02560 * 8 7 5 32 32 H 1.09004 * 109.47079 * 59.99820 * 9 8 7 33 33 H 1.08997 * 109.46948 * 299.99963 * 9 8 7 34 34 H 0.97001 * 120.00005 * 359.73274 * 12 10 9 35 35 H 1.08998 * 109.46993 * 299.99528 * 13 12 10 36 36 H 1.08999 * 109.46979 * 60.00732 * 13 12 10 37 37 H 1.08997 * 109.46948 * 300.00198 * 14 13 12 38 38 H 1.09004 * 109.47079 * 60.00055 * 14 13 12 39 39 H 0.97001 * 120.00424 * 180.02562 * 19 18 16 40 40 H 1.08997 * 115.55139 * 329.72385 * 24 15 14 41 41 H 1.08997 * 117.50169 * 0.02562 * 25 24 15 42 42 H 1.09000 * 117.49517 * 145.02140 * 25 24 15 43 43 H 1.08997 * 117.49450 * 214.97733 * 26 24 15 44 44 H 1.08998 * 117.49995 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7268 -0.0056 5 6 3.6037 -0.6054 -0.0037 6 17 5.1012 -1.4836 -0.0093 7 6 2.3530 -1.1315 0.0046 8 6 1.9580 -2.5858 0.0093 9 6 1.8322 -3.0753 1.4534 10 6 1.4366 -4.5295 1.4582 11 8 1.2720 -5.1166 0.4098 12 7 1.2667 -5.1778 2.6276 13 6 0.8826 -6.5915 2.6321 14 6 0.7566 -7.0811 4.0762 15 7 0.3720 -8.4947 4.0809 16 6 -0.9520 -8.8439 4.0888 17 1 -1.2923 -9.6844 3.5021 18 6 -1.8568 -8.1178 4.8509 19 7 -3.1356 -8.1257 4.5390 20 14 -1.2598 -7.1293 6.3191 21 1 -0.9529 -5.7413 5.8898 22 1 -2.3175 -7.1027 7.3611 23 1 -0.0343 -7.7582 6.8739 24 6 1.4039 -9.5346 4.0771 25 6 0.9400 -10.9898 3.9872 26 6 1.4951 -10.4437 5.3043 27 1 -0.3634 0.0035 1.0277 28 1 -0.3634 0.8882 -0.5170 29 1 -0.3634 -0.8918 -0.5107 30 1 2.7187 -3.1707 -0.5076 31 1 1.0011 -2.7040 -0.4991 32 1 1.0714 -2.4904 1.9704 33 1 2.7890 -2.9571 1.9618 34 1 1.4028 -4.7094 3.4660 35 1 -0.0745 -6.7097 2.1240 36 1 1.6433 -7.1763 2.1149 37 1 1.7135 -6.9628 4.5847 38 1 -0.0042 -6.4962 4.5931 39 1 -3.7678 -7.6180 5.0713 40 1 2.3351 -9.2710 3.5757 41 1 -0.1329 -11.1734 3.9305 42 1 1.5660 -11.6838 3.4264 43 1 2.4863 -10.7786 5.6099 44 1 0.7877 -10.2679 6.1146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267337913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = 46.443830 kcal Electronic energy + Delta-G solvation = -26729.052950 eV Core-core repulsion = 22711.721711 eV Total energy + Delta-G solvation = -4017.331238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.17300 -40.74830 -39.02341 -38.29468 -36.98184 -36.32006 -34.94619 -34.22181 -33.28292 -31.78198 -29.80678 -29.49032 -26.70444 -25.81692 -23.84612 -22.94981 -22.63968 -22.37975 -21.51404 -21.22722 -19.04796 -18.80826 -18.56157 -17.76083 -17.45986 -17.28034 -16.86794 -16.45764 -16.27014 -15.58273 -15.24678 -15.08887 -14.60809 -14.40171 -14.30241 -14.17390 -13.95015 -13.87244 -13.66508 -13.59829 -13.48218 -13.25401 -13.23397 -12.86372 -12.68764 -12.49394 -12.23265 -12.09533 -11.83266 -11.82846 -11.71992 -11.31106 -11.08888 -11.00175 -10.86535 -10.60769 -10.29317 -10.02536 -8.66726 -8.21248 -5.62555 -0.00291 0.08458 0.95228 1.27172 1.43376 1.54227 1.69494 2.17554 2.40618 2.52319 2.96985 3.03601 3.24875 3.34237 3.46667 3.72250 3.74081 4.00790 4.14821 4.18140 4.25781 4.28554 4.31435 4.40157 4.50113 4.54118 4.61438 4.64494 4.67490 4.74897 4.93989 4.96355 4.99193 5.02569 5.05035 5.16521 5.22518 5.31328 5.50167 5.54679 5.93791 6.21084 6.61460 6.95597 6.97080 7.31530 7.60070 7.99812 8.97796 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.002371 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.206998 B =11807.778396 C =12790.479232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.036 3.964 3 N -0.371 5.371 4 O 0.099 5.901 5 C 0.000 4.000 6 Cl 0.063 6.937 7 C -0.164 4.164 8 C -0.025 4.025 9 C -0.125 4.125 10 C 0.509 3.491 11 O -0.586 6.586 12 N -0.718 5.718 13 C 0.118 3.882 14 C 0.129 3.871 15 N -0.583 5.583 16 C -0.259 4.259 17 H 0.041 0.959 18 C -0.017 4.017 19 N -0.945 5.945 20 Si 0.939 3.061 21 H -0.257 1.257 22 H -0.313 1.313 23 H -0.257 1.257 24 C 0.104 3.896 25 C -0.192 4.192 26 C -0.207 4.207 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.414 0.586 35 H 0.031 0.969 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.127 0.873 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.494 16.437 -5.351 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 N -0.079 5.079 4 O 0.034 5.966 5 C -0.090 4.090 6 Cl 0.091 6.909 7 C -0.168 4.168 8 C -0.063 4.063 9 C -0.165 4.165 10 C 0.297 3.703 11 O -0.466 6.466 12 N -0.371 5.371 13 C -0.008 4.008 14 C 0.003 3.997 15 N -0.302 5.302 16 C -0.389 4.389 17 H 0.058 0.942 18 C -0.214 4.214 19 N -0.588 5.588 20 Si 0.766 3.234 21 H -0.183 1.183 22 H -0.241 1.241 23 H -0.181 1.181 24 C -0.003 4.003 25 C -0.230 4.230 26 C -0.248 4.248 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.250 0.750 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.139 17.301 -6.048 24.421 hybrid contribution -0.387 -0.589 0.975 1.203 sum 15.752 16.713 -5.072 23.520 Atomic orbital electron populations 1.20416 0.83464 1.05087 1.05036 1.23804 1.00291 0.87449 1.00706 1.73967 0.88861 1.23789 1.21294 1.84890 1.22102 1.21205 1.68403 1.24780 0.91708 0.84720 1.07791 1.98474 1.27418 1.68439 1.96581 1.20866 0.89756 0.98175 1.08041 1.19629 1.03943 0.86307 0.96457 1.21628 1.05733 0.90341 0.98787 1.21197 0.75995 0.90088 0.82991 1.90703 1.52801 1.70195 1.32926 1.45958 1.69822 1.11897 1.09378 1.21731 0.98715 0.80877 0.99495 1.21432 0.99791 0.84640 0.93809 1.43622 1.01558 1.00373 1.84681 1.18512 0.82885 1.15423 1.22059 0.94175 1.26149 0.94783 1.00352 1.00104 1.70019 1.03884 1.44654 1.40239 0.85967 0.77701 0.79471 0.80224 1.18329 1.24144 1.18092 1.21534 0.93152 0.85832 0.99825 1.23048 1.00727 0.97596 1.01609 1.23341 1.01771 1.07510 0.92158 0.88328 0.89591 0.88520 0.89729 0.89220 0.86485 0.86418 0.74991 0.95065 0.92212 0.89765 0.93499 0.92758 0.85590 0.91503 0.87097 0.86921 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.39 71.23 0.74 -0.28 16 2 C 0.04 0.63 7.32 43.55 0.32 0.95 16 3 N -0.37 -7.75 12.07 -49.43 -0.60 -8.35 16 4 O 0.10 1.96 11.20 71.46 0.80 2.76 16 5 C 0.00 0.00 8.12 67.23 0.55 0.55 16 6 Cl 0.06 0.88 29.23 -2.72 -0.08 0.80 16 7 C -0.16 -2.76 5.58 -19.71 -0.11 -2.87 16 8 C -0.03 -0.43 4.90 29.85 0.15 -0.29 16 9 C -0.13 -2.01 5.68 29.85 0.17 -1.84 16 10 C 0.51 13.29 7.83 87.66 0.69 13.97 16 11 O -0.59 -20.73 15.98 -3.03 -0.05 -20.78 16 12 N -0.72 -18.83 5.56 -463.05 -2.57 -21.40 16 13 C 0.12 4.16 6.00 86.38 0.52 4.68 16 14 C 0.13 4.72 4.68 86.38 0.40 5.12 16 15 N -0.58 -25.46 2.38 -678.03 -1.61 -27.07 16 16 C -0.26 -14.05 8.93 84.03 0.75 -13.30 16 17 H 0.04 2.48 6.85 -2.91 -0.02 2.46 16 18 C -0.02 -0.94 5.28 84.86 0.45 -0.49 16 19 N -0.94 -57.50 13.97 21.65 0.30 -57.20 16 20 Si 0.94 42.80 25.32 68.60 1.74 44.53 16 21 H -0.26 -10.47 6.52 99.48 0.65 -9.82 16 22 H -0.31 -14.84 7.11 99.48 0.71 -14.14 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 C 0.10 3.77 6.57 44.99 0.30 4.06 16 25 C -0.19 -6.91 9.80 30.59 0.30 -6.62 16 26 C -0.21 -7.10 10.35 30.59 0.32 -6.78 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 1.04 7.65 -2.39 -0.02 1.02 16 30 H 0.08 1.58 8.10 -2.39 -0.02 1.56 16 31 H 0.09 1.64 7.60 -2.38 -0.02 1.62 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.41 7.99 8.47 -92.71 -0.79 7.21 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 38 H 0.05 1.88 3.45 -2.39 -0.01 1.87 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.13 3.75 8.14 -2.39 -0.02 3.73 16 41 H 0.07 2.92 6.44 -2.39 -0.02 2.90 16 42 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -71.88 384.23 3.65 -68.23 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.19 Total: 21.60 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 5.53 Total: -3.13 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -4.48 Total: -114.02 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.75 Total: -18.02 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.74 Total: 44.53 kcal Atomic # 17 Polarization: 0.88 SS G_CDS: -0.08 Total: 0.80 kcal Total: -71.88 3.65 -68.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267337913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.675 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds