Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31238 * 124.05831 * 2 1 4 4 N 1.27330 * 120.04260 * 180.34438 * 3 2 1 5 5 S 1.56639 * 109.73977 * 359.71696 * 4 3 2 6 6 C 1.38248 * 124.05884 * 179.83779 * 2 1 3 7 7 C 1.47177 * 128.47252 * 359.97438 * 6 2 1 8 8 O 1.21617 * 120.00037 * 7.56260 * 7 6 2 9 9 N 1.34772 * 119.99987 * 187.56062 * 7 6 2 10 10 C 1.46501 * 119.99945 * 357.60458 * 9 7 6 11 11 C 1.46494 * 120.00193 * 177.60077 * 9 7 6 12 12 H 1.09003 * 109.46871 * 359.97438 * 11 9 7 13 13 C 1.53001 * 109.47369 * 240.00287 * 11 9 7 14 14 C 1.52995 * 109.47248 * 120.00271 * 11 9 7 15 15 N 1.46908 * 109.47084 * 304.99922 * 14 11 9 16 16 C 1.46902 * 110.99887 * 179.97438 * 15 14 11 17 17 C 1.50702 * 109.46735 * 180.02562 * 16 15 14 18 18 O 1.21286 * 120.00045 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99758 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99989 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99778 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00063 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00064 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47553 * 89.99577 * 24 22 20 26 26 H 1.48506 * 109.47361 * 209.99755 * 24 22 20 27 27 H 1.48504 * 109.47090 * 329.99519 * 24 22 20 28 28 H 1.09002 * 109.46864 * 270.16283 * 1 2 3 29 29 H 1.08993 * 109.47105 * 30.16585 * 1 2 3 30 30 H 1.09001 * 109.46881 * 150.16937 * 1 2 3 31 31 H 1.09001 * 109.46899 * 276.13657 * 10 9 7 32 32 H 1.08997 * 109.47275 * 36.13157 * 10 9 7 33 33 H 1.09000 * 109.47413 * 156.13470 * 10 9 7 34 34 H 1.09002 * 109.47024 * 60.00074 * 13 11 9 35 35 H 1.08997 * 109.47367 * 179.97438 * 13 11 9 36 36 H 1.09000 * 109.47123 * 300.00114 * 13 11 9 37 37 H 1.09001 * 109.47356 * 185.00516 * 14 11 9 38 38 H 1.08994 * 109.47251 * 65.00500 * 14 11 9 39 39 H 1.00903 * 110.99625 * 303.95624 * 15 14 11 40 40 H 1.08991 * 109.47377 * 300.00360 * 16 15 14 41 41 H 1.08999 * 109.46691 * 60.00416 * 16 15 14 42 42 H 0.97002 * 119.99856 * 359.97438 * 19 17 16 43 43 H 0.97002 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5121 0.9981 -0.0066 5 16 3.9366 -0.5097 -0.0065 6 6 2.2812 -1.1453 0.0032 7 6 1.8394 -2.5492 0.0077 8 8 0.6609 -2.8163 -0.1296 9 7 2.7409 -3.5388 0.1640 10 6 4.1663 -3.2201 0.2768 11 6 2.2953 -4.9332 0.2212 12 1 1.2106 -4.9724 0.1214 13 6 2.7060 -5.5453 1.5620 14 6 2.9418 -5.7224 -0.9190 15 7 2.6458 -5.0649 -2.1990 16 6 3.2526 -5.7963 -3.3192 17 6 2.9287 -5.0933 -4.6122 18 8 2.2587 -4.0823 -4.6016 19 7 3.3835 -5.5881 -5.7805 20 6 3.0892 -4.9484 -6.9568 21 1 2.4926 -4.0481 -6.9473 22 6 3.5576 -5.4587 -8.1612 23 7 4.2831 -6.5544 -8.1728 24 14 3.1561 -4.5874 -9.7641 25 1 4.2128 -3.5876 -10.0623 26 1 3.0906 -5.5818 -10.8651 27 1 1.8456 -3.9003 -9.6391 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8884 -0.5164 30 1 -0.3633 -0.8915 -0.5112 31 1 4.5932 -3.1065 -0.7197 32 1 4.2879 -2.2902 0.8322 33 1 4.6786 -4.0265 0.8017 34 1 2.2453 -4.9831 2.3743 35 1 2.3741 -6.5826 1.6047 36 1 3.7906 -5.5061 1.6623 37 1 2.5428 -6.7367 -0.9308 38 1 4.0209 -5.7582 -0.7699 39 1 1.6508 -4.9615 -2.3307 40 1 4.3338 -5.8322 -3.1865 41 1 2.8561 -6.8112 -3.3477 42 1 3.9196 -6.3965 -5.7889 43 1 4.6098 -6.9109 -9.0137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268048029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = 13.223562 kcal Electronic energy + Delta-G solvation = -27550.694934 eV Core-core repulsion = 23566.259614 eV Total energy + Delta-G solvation = -3984.435320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.02505 -40.05659 -38.29989 -36.95717 -34.85715 -33.85420 -33.40287 -31.95363 -31.20423 -28.45936 -27.68293 -27.40490 -26.88037 -25.05582 -23.58000 -22.94033 -20.91646 -19.50942 -19.10975 -18.87550 -17.89385 -17.26514 -16.78421 -16.36413 -15.98718 -15.36525 -15.33810 -14.68620 -14.58106 -14.35706 -14.12583 -14.02546 -13.57297 -13.47222 -13.30673 -13.17957 -13.00145 -12.89480 -12.74853 -12.51843 -12.28447 -12.06188 -11.78815 -11.65291 -11.54574 -11.47820 -11.05714 -11.03284 -10.39994 -10.22895 -10.20643 -10.00086 -9.84170 -9.79339 -9.51908 -8.86636 -8.46666 -8.09610 -7.97060 -6.43001 -3.83711 -0.33790 0.70488 1.40462 1.87044 2.63425 2.91188 3.17296 3.26029 3.32209 3.80419 3.89537 4.00681 4.19524 4.33272 4.50495 4.64923 4.69571 4.86449 5.02105 5.08729 5.14893 5.21255 5.23637 5.33666 5.37773 5.46071 5.47261 5.50297 5.62530 5.72379 5.77855 5.85519 5.92975 6.06896 6.22650 6.28561 7.05839 7.15088 7.54254 7.59457 7.60089 7.90891 8.05244 8.60180 9.17101 9.53039 10.04764 10.74748 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011399 B = 0.002989 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.740127 B = 9365.849383 C =10700.449288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.098 3.902 3 N -0.253 5.253 4 N -0.282 5.282 5 S 0.435 5.565 6 C -0.289 4.289 7 C 0.611 3.389 8 O -0.517 6.517 9 N -0.583 5.583 10 C 0.067 3.933 11 C 0.141 3.859 12 H 0.106 0.894 13 C -0.160 4.160 14 C 0.047 3.953 15 N -0.665 5.665 16 C 0.052 3.948 17 C 0.440 3.560 18 O -0.581 6.581 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.352 0.648 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 2.011 22.399 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 N -0.119 5.119 4 N -0.261 5.261 5 S 0.573 5.427 6 C -0.430 4.430 7 C 0.397 3.603 8 O -0.393 6.393 9 N -0.315 5.315 10 C -0.078 4.078 11 C 0.038 3.962 12 H 0.124 0.876 13 C -0.219 4.219 14 C -0.084 4.084 15 N -0.298 5.298 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.465 6.465 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.172 0.828 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.138 4.073 22.192 22.663 hybrid contribution -1.316 -1.498 -1.075 2.265 sum 0.822 2.575 21.117 21.289 Atomic orbital electron populations 1.20536 0.83943 1.05394 1.03915 1.22924 1.00173 0.85382 0.96401 1.70727 0.97141 1.28133 1.15914 1.78616 1.09423 1.19100 1.18950 1.82881 1.09900 0.98978 1.50978 1.27664 0.98022 0.99969 1.17312 1.16325 0.85510 0.81894 0.76605 1.90781 1.16338 1.82544 1.49661 1.47305 1.06627 1.06082 1.71506 1.22063 0.81791 1.00780 1.03206 1.21195 1.01416 0.79173 0.94444 0.87650 1.22125 1.02097 1.01413 0.96259 1.22378 1.01010 0.95239 0.89783 1.60030 1.19367 1.50768 0.99633 1.21661 1.00347 0.95058 0.91011 1.19816 0.85553 0.87511 0.84627 1.90543 1.42734 1.26476 1.86708 1.41859 1.47197 1.25964 1.05058 1.19698 1.31050 1.09231 0.82862 0.87982 1.25245 0.96649 0.96352 0.99631 1.69610 1.35720 1.21014 1.28051 0.85870 0.79128 0.78705 0.80682 1.20388 1.20908 1.19408 0.89712 0.89908 0.87732 0.90288 0.92269 0.89041 0.91889 0.90903 0.91938 0.94074 0.90679 0.82821 0.89748 0.93922 0.77513 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.98 36.00 0.36 -0.50 16 2 C 0.10 1.31 7.00 -82.84 -0.58 0.73 16 3 N -0.25 -3.63 11.54 33.42 0.39 -3.24 16 4 N -0.28 -3.83 12.51 60.35 0.75 -3.08 16 5 S 0.43 4.63 19.07 -107.50 -2.05 2.58 16 6 C -0.29 -3.71 6.50 -35.95 -0.23 -3.94 16 7 C 0.61 8.18 7.66 -12.63 -0.10 8.08 16 8 O -0.52 -8.13 14.20 5.26 0.07 -8.05 16 9 N -0.58 -6.19 2.48 -175.30 -0.44 -6.63 16 10 C 0.07 0.53 8.23 59.85 0.49 1.02 16 11 C 0.14 1.34 2.87 -67.94 -0.20 1.15 16 12 H 0.11 1.19 6.90 -51.93 -0.36 0.83 16 13 C -0.16 -1.02 9.18 37.16 0.34 -0.68 16 14 C 0.05 0.48 4.98 -3.82 -0.02 0.46 16 15 N -0.67 -10.10 5.85 -115.06 -0.67 -10.78 16 16 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 17 C 0.44 10.26 7.82 -10.98 -0.09 10.18 16 18 O -0.58 -15.86 15.78 5.55 0.09 -15.78 16 19 N -0.56 -14.19 5.29 -10.97 -0.06 -14.24 16 20 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 24 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 1.30 6.35 -51.93 -0.33 0.97 16 31 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 32 H 0.06 0.41 4.47 -24.58 -0.11 0.30 16 33 H 0.09 0.47 6.44 -51.93 -0.33 0.14 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.32 6.67 -51.93 -0.35 -0.03 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 39 H 0.35 6.04 8.43 -39.29 -0.33 5.71 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -34.50 371.70 -6.33 -40.83 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.43 Total: 11.03 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.29 Total: 9.34 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.70 Total: -61.71 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.16 Total: -23.83 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -2.05 Total: 2.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.50 -6.33 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268048029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.053 kcal (2) G-P(sol) polarization free energy of solvation -34.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds