Wall clock time and date at job start Sat Apr 11 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47580 * 2 1 4 4 N 1.31242 * 124.05510 * 270.18950 * 3 2 1 5 5 N 1.27335 * 120.03715 * 180.35960 * 4 3 2 6 6 S 1.56637 * 109.74245 * 359.69401 * 5 4 3 7 7 C 1.38247 * 124.05507 * 89.99475 * 3 2 1 8 8 C 1.47167 * 128.47553 * 359.97438 * 7 3 2 9 9 O 1.21626 * 119.99995 * 359.70575 * 8 7 3 10 10 N 1.34783 * 119.99784 * 179.69651 * 8 7 3 11 11 C 1.46500 * 119.99492 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47158 * 324.99952 * 11 10 8 13 13 C 1.52993 * 109.47187 * 85.00558 * 11 10 8 14 14 C 1.53006 * 109.46616 * 205.00467 * 11 10 8 15 15 N 1.46898 * 109.47138 * 55.00041 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00498 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99920 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47208 * 89.99447 * 24 22 20 26 26 H 1.48492 * 109.47264 * 210.00335 * 24 22 20 27 27 H 1.48508 * 109.46806 * 329.99819 * 24 22 20 28 28 H 1.08999 * 109.47071 * 59.99942 * 1 2 3 29 29 H 1.08999 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47105 * 300.00202 * 1 2 3 31 31 H 1.09010 * 109.47299 * 239.99974 * 2 1 3 32 32 H 1.09007 * 109.47338 * 120.00012 * 2 1 3 33 33 H 0.96993 * 119.99811 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47456 * 59.99384 * 13 11 10 35 35 H 1.09002 * 109.47076 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.47314 * 299.99331 * 13 11 10 37 37 H 1.08997 * 109.46770 * 294.99988 * 14 11 10 38 38 H 1.08995 * 109.47019 * 175.00201 * 14 11 10 39 39 H 1.00904 * 110.99913 * 303.95145 * 15 14 11 40 40 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 41 41 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 42 42 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 43 43 H 0.97002 * 120.00283 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2741 2.1149 -1.0873 5 7 2.7044 3.3100 -0.9981 6 16 2.8503 3.7087 0.5096 7 6 2.2905 2.1507 1.1454 8 6 2.1426 1.7344 2.5492 9 8 1.7411 0.6170 2.8131 10 7 2.4522 2.5913 3.5424 11 6 2.3054 2.1767 4.9398 12 1 1.4424 1.5177 5.0345 13 6 3.5661 1.4336 5.3863 14 6 2.1029 3.4119 5.8196 15 7 0.9628 4.1898 5.3166 16 6 0.7383 5.3865 6.1385 17 6 -0.4359 6.1576 5.5930 18 8 -1.0278 5.7501 4.6159 19 7 -0.8282 7.3001 6.1908 20 6 -1.8967 8.0013 5.6948 21 1 -2.4238 7.6384 4.8247 22 6 -2.3016 9.1788 6.3113 23 7 -3.3255 9.8513 5.8356 24 14 -1.3903 9.8061 7.8166 25 1 -0.2857 10.7017 7.3890 26 1 -2.3298 10.5589 8.6859 27 1 -0.8311 8.6560 8.5715 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.7721 3.4825 3.3319 34 1 4.4291 2.0926 5.2915 35 1 3.4571 1.1255 6.4262 36 1 3.7104 0.5536 4.7595 37 1 3.0021 4.0274 5.7943 38 1 1.9053 3.0993 6.8449 39 1 1.0931 4.4367 4.3470 40 1 0.5315 5.0879 7.1663 41 1 1.6282 6.0155 6.1150 42 1 -0.3550 7.6257 6.9724 43 1 -3.6079 10.6736 6.2659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268692547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:50 Heat of formation + Delta-G solvation = 1.030354 kcal Electronic energy + Delta-G solvation = -26877.963465 eV Core-core repulsion = 22892.999408 eV Total energy + Delta-G solvation = -3984.964057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29774 -40.00812 -38.56451 -36.98986 -34.67544 -34.40337 -33.81611 -31.92314 -31.68178 -30.32450 -27.87590 -27.76017 -25.17324 -24.34248 -23.34096 -22.90141 -21.13098 -20.73912 -19.45796 -18.74413 -18.48667 -17.81097 -16.63633 -16.23544 -16.21239 -15.56952 -15.32728 -14.95502 -14.88890 -14.59807 -14.39090 -14.34448 -14.11011 -13.31696 -13.28151 -13.24910 -12.85276 -12.77231 -12.70111 -12.37270 -12.33839 -12.04373 -11.96228 -11.76210 -11.65291 -11.26170 -11.17585 -11.16535 -10.64199 -10.63755 -10.26899 -10.12347 -10.02596 -10.02158 -9.62602 -9.47896 -8.68262 -8.30366 -8.22493 -6.35540 -3.87451 -0.55192 0.52071 1.18488 1.66411 2.60728 2.71239 2.98253 3.02092 3.11298 3.57910 3.67020 3.87988 4.05760 4.23684 4.35124 4.62404 4.70536 4.86055 4.93464 5.02102 5.08019 5.10630 5.16485 5.24727 5.36661 5.41535 5.52032 5.54939 5.69851 5.71040 5.74511 5.84029 5.88215 5.91280 6.06383 6.13364 6.90406 6.98555 7.37579 7.38035 7.52787 7.73482 8.09201 8.54306 8.90013 9.37097 9.76503 10.77470 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.002579 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.018088 B =10854.366345 C =11855.628273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C 0.106 3.894 4 N -0.249 5.249 5 N -0.251 5.251 6 S 0.420 5.580 7 C -0.293 4.293 8 C 0.610 3.390 9 O -0.509 6.509 10 N -0.715 5.715 11 C 0.146 3.854 12 H 0.105 0.895 13 C -0.163 4.163 14 C 0.049 3.951 15 N -0.667 5.667 16 C 0.047 3.953 17 C 0.447 3.553 18 O -0.564 6.564 19 N -0.589 5.589 20 C -0.306 4.306 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.396 0.604 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.092 0.908 39 H 0.347 0.653 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.370 0.630 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.421 -16.046 -3.032 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.042 4.042 4 N -0.115 5.115 5 N -0.231 5.231 6 S 0.557 5.443 7 C -0.434 4.434 8 C 0.393 3.607 9 O -0.385 6.385 10 N -0.367 5.367 11 C 0.042 3.958 12 H 0.123 0.877 13 C -0.222 4.222 14 C -0.081 4.081 15 N -0.300 5.300 16 C -0.086 4.086 17 C 0.233 3.767 18 O -0.446 6.446 19 N -0.228 5.228 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.707 3.293 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.230 0.770 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.110 0.890 39 H 0.167 0.833 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.203 0.797 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.650 -15.753 -4.281 24.042 hybrid contribution 1.027 0.732 1.440 1.914 sum 18.678 -15.021 -2.841 24.136 Atomic orbital electron populations 1.21681 0.93088 1.02770 1.02590 1.20311 0.97155 0.86308 1.04861 1.22994 0.96407 0.99743 0.85017 1.70611 1.13927 0.98990 1.27946 1.78903 1.18175 1.10531 1.15534 1.82613 1.45735 1.14238 1.01736 1.27757 1.15475 1.00155 1.00015 1.16333 0.77535 0.84963 0.81833 1.90814 1.45179 1.19573 1.82945 1.45896 1.67605 1.16668 1.06492 1.21152 0.99651 0.96606 0.78412 0.87750 1.22166 0.96999 1.00810 1.02176 1.22339 0.92244 0.93927 0.99602 1.60014 1.40813 1.22309 1.06880 1.21738 0.97193 0.91111 0.98524 1.19680 0.87445 0.82760 0.86820 1.90576 1.57450 1.68709 1.27874 1.42200 1.30381 1.22102 1.28141 1.19429 1.06405 1.03741 1.13923 0.86290 1.25048 0.96538 0.96360 0.98184 1.69620 1.25239 1.16514 1.40601 0.86666 0.80205 0.79520 0.82954 1.19653 1.20139 1.19462 0.92470 0.91227 0.91864 0.89536 0.87645 0.76970 0.92397 0.90998 0.91670 0.94724 0.89010 0.83275 0.89206 0.93622 0.79682 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.90 37.16 0.37 -1.02 16 2 C -0.05 -0.44 5.94 -27.88 -0.17 -0.60 16 3 C 0.11 1.21 6.25 -82.84 -0.52 0.69 16 4 N -0.25 -3.14 11.54 33.42 0.39 -2.76 16 5 N -0.25 -3.06 12.51 60.35 0.75 -2.31 16 6 S 0.42 3.95 23.05 -107.50 -2.48 1.47 16 7 C -0.29 -3.17 6.81 -35.95 -0.24 -3.42 16 8 C 0.61 6.85 7.77 -12.63 -0.10 6.75 16 9 O -0.51 -6.80 14.56 5.25 0.08 -6.73 16 10 N -0.71 -6.61 4.35 -54.96 -0.24 -6.85 16 11 C 0.15 1.32 2.88 -67.93 -0.20 1.12 16 12 H 0.10 1.18 7.58 -51.93 -0.39 0.78 16 13 C -0.16 -1.14 9.48 37.15 0.35 -0.79 16 14 C 0.05 0.45 5.30 -3.82 -0.02 0.43 16 15 N -0.67 -9.10 6.12 -115.05 -0.70 -9.81 16 16 C 0.05 0.70 6.17 -4.97 -0.03 0.67 16 17 C 0.45 9.69 7.82 -10.99 -0.09 9.60 16 18 O -0.56 -14.69 15.78 5.55 0.09 -14.61 16 19 N -0.59 -13.53 5.09 -10.96 -0.06 -13.58 16 20 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 21 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.40 13.96 55.50 0.77 -24.62 16 24 Si 0.88 18.86 27.74 -169.99 -4.71 14.14 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.11 1.03 6.48 -51.92 -0.34 0.70 16 33 H 0.40 2.99 7.58 -40.82 -0.31 2.68 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.35 4.90 7.28 -39.29 -0.29 4.62 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.37 7.39 5.76 -40.82 -0.24 7.16 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -34.49 379.33 -7.05 -41.54 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.77 Total: 12.57 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.89 Total: 5.82 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.92 Total: -59.93 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.16 Total: -21.33 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.14 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -2.48 Total: 1.47 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.49 -7.05 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268692547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.569 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds