Wall clock time and date at job start Sat Apr 11 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47580 * 2 1 4 4 N 1.31242 * 124.05510 * 270.18950 * 3 2 1 5 5 N 1.27335 * 120.03715 * 180.35960 * 4 3 2 6 6 S 1.56637 * 109.74245 * 359.69401 * 5 4 3 7 7 C 1.38247 * 124.05507 * 89.99475 * 3 2 1 8 8 C 1.47167 * 128.47553 * 359.97438 * 7 3 2 9 9 O 1.21626 * 119.99995 * 359.70575 * 8 7 3 10 10 N 1.34783 * 119.99784 * 179.69651 * 8 7 3 11 11 C 1.46500 * 119.99492 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47158 * 324.99952 * 11 10 8 13 13 C 1.52993 * 109.47187 * 85.00558 * 11 10 8 14 14 C 1.53006 * 109.46616 * 205.00467 * 11 10 8 15 15 N 1.46898 * 109.47138 * 55.00041 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00498 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99920 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47208 * 89.99447 * 24 22 20 26 26 H 1.48492 * 109.47264 * 210.00335 * 24 22 20 27 27 H 1.48508 * 109.46806 * 329.99819 * 24 22 20 28 28 H 1.08999 * 109.47071 * 59.99942 * 1 2 3 29 29 H 1.08999 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47105 * 300.00202 * 1 2 3 31 31 H 1.09010 * 109.47299 * 239.99974 * 2 1 3 32 32 H 1.09007 * 109.47338 * 120.00012 * 2 1 3 33 33 H 0.96993 * 119.99811 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47456 * 59.99384 * 13 11 10 35 35 H 1.09002 * 109.47076 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.47314 * 299.99331 * 13 11 10 37 37 H 1.08997 * 109.46770 * 294.99988 * 14 11 10 38 38 H 1.08995 * 109.47019 * 175.00201 * 14 11 10 39 39 H 1.00904 * 110.99913 * 303.95145 * 15 14 11 40 40 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 41 41 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 42 42 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 43 43 H 0.97002 * 120.00283 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2741 2.1149 -1.0873 5 7 2.7044 3.3100 -0.9981 6 16 2.8503 3.7087 0.5096 7 6 2.2905 2.1507 1.1454 8 6 2.1426 1.7344 2.5492 9 8 1.7411 0.6170 2.8131 10 7 2.4522 2.5913 3.5424 11 6 2.3054 2.1767 4.9398 12 1 1.4424 1.5177 5.0345 13 6 3.5661 1.4336 5.3863 14 6 2.1029 3.4119 5.8196 15 7 0.9628 4.1898 5.3166 16 6 0.7383 5.3865 6.1385 17 6 -0.4359 6.1576 5.5930 18 8 -1.0278 5.7501 4.6159 19 7 -0.8282 7.3001 6.1908 20 6 -1.8967 8.0013 5.6948 21 1 -2.4238 7.6384 4.8247 22 6 -2.3016 9.1788 6.3113 23 7 -3.3255 9.8513 5.8356 24 14 -1.3903 9.8061 7.8166 25 1 -0.2857 10.7017 7.3890 26 1 -2.3298 10.5589 8.6859 27 1 -0.8311 8.6560 8.5715 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.7721 3.4825 3.3319 34 1 4.4291 2.0926 5.2915 35 1 3.4571 1.1255 6.4262 36 1 3.7104 0.5536 4.7595 37 1 3.0021 4.0274 5.7943 38 1 1.9053 3.0993 6.8449 39 1 1.0931 4.4367 4.3470 40 1 0.5315 5.0879 7.1663 41 1 1.6282 6.0155 6.1150 42 1 -0.3550 7.6257 6.9724 43 1 -3.6079 10.6736 6.2659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268692547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:49 Heat of formation + Delta-G solvation = -27.943064 kcal Electronic energy + Delta-G solvation = -26879.219847 eV Core-core repulsion = 22892.999408 eV Total energy + Delta-G solvation = -3986.220439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.16608 -40.87667 -40.24169 -37.94772 -36.07933 -35.45684 -35.14032 -33.73472 -32.70861 -31.13520 -29.09639 -28.62272 -26.62684 -25.22486 -24.53232 -23.76241 -21.90964 -21.58944 -21.25569 -20.27458 -19.55944 -18.78308 -17.72931 -17.42490 -17.12867 -16.96359 -16.52849 -16.15048 -15.83072 -15.64040 -15.50606 -15.33782 -15.16029 -14.92781 -14.47215 -14.18310 -14.14645 -13.99701 -13.59297 -13.40267 -13.19200 -13.12643 -13.02807 -12.78914 -12.68058 -12.43034 -12.40052 -11.99132 -11.97111 -11.91254 -11.51692 -11.49730 -11.13498 -10.98353 -10.87013 -10.44881 -10.24146 -10.22908 -9.31154 -8.40460 -6.01714 -1.41691 -0.30418 0.33983 0.77904 1.31427 1.37013 1.46298 1.77739 1.88868 1.97962 2.24368 2.71150 2.74946 3.16546 3.36234 3.41843 3.59262 3.88027 4.04859 4.15103 4.23714 4.29467 4.31972 4.36369 4.47632 4.59943 4.72483 4.74543 4.78395 4.81706 4.96672 5.05924 5.10766 5.26732 5.33178 5.40523 5.53364 5.90077 6.03625 6.21191 6.35735 6.51932 6.60718 6.89558 6.92063 7.41387 7.98678 8.77339 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.002579 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.018088 B =10854.366345 C =11855.628273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C 0.097 3.903 4 N -0.271 5.271 5 N -0.284 5.284 6 S 0.488 5.512 7 C -0.308 4.308 8 C 0.608 3.392 9 O -0.536 6.536 10 N -0.706 5.706 11 C 0.146 3.854 12 H 0.077 0.923 13 C -0.154 4.154 14 C 0.054 3.946 15 N -0.693 5.693 16 C 0.062 3.938 17 C 0.445 3.555 18 O -0.617 6.617 19 N -0.590 5.590 20 C -0.329 4.329 21 H 0.052 0.948 22 C -0.017 4.017 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.256 1.256 26 H -0.279 1.279 27 H -0.228 1.228 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.406 0.594 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.341 0.659 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.391 0.609 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.803 -15.929 -0.012 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.084 4.084 3 C -0.052 4.052 4 N -0.135 5.135 5 N -0.265 5.265 6 S 0.625 5.375 7 C -0.449 4.449 8 C 0.391 3.609 9 O -0.414 6.414 10 N -0.358 5.358 11 C 0.042 3.958 12 H 0.095 0.905 13 C -0.212 4.212 14 C -0.075 4.075 15 N -0.326 5.326 16 C -0.070 4.070 17 C 0.234 3.766 18 O -0.501 6.501 19 N -0.232 5.232 20 C -0.458 4.458 21 H 0.070 0.930 22 C -0.215 4.215 23 N -0.578 5.578 24 Si 0.787 3.213 25 H -0.180 1.180 26 H -0.204 1.204 27 H -0.151 1.151 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.241 0.759 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.160 0.840 40 H 0.135 0.865 41 H 0.104 0.896 42 H 0.226 0.774 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.076 -15.646 -1.250 26.279 hybrid contribution -0.072 0.664 0.426 0.792 sum 21.003 -14.983 -0.824 25.813 Atomic orbital electron populations 1.21646 0.93302 1.03571 1.01196 1.20348 0.96863 0.85704 1.05490 1.23273 0.96405 1.00443 0.85037 1.70646 1.14854 0.99297 1.28712 1.78678 1.19292 1.10812 1.17696 1.82253 1.43457 1.12244 0.99569 1.27874 1.15819 1.01222 0.99950 1.16416 0.77349 0.84884 0.82207 1.90796 1.46513 1.20742 1.83337 1.45879 1.66719 1.16771 1.06441 1.21179 0.99821 0.96612 0.78160 0.90459 1.22089 0.96282 1.00212 1.02661 1.22429 0.91794 0.93334 0.99898 1.59986 1.43786 1.22208 1.06618 1.21667 0.94925 0.91280 0.99135 1.21117 0.88149 0.81956 0.85422 1.90558 1.59509 1.69807 1.30246 1.42022 1.29586 1.22518 1.29083 1.18988 1.08353 1.05308 1.13146 0.92950 1.26159 0.97285 0.95772 1.02329 1.69814 1.27611 1.17329 1.43000 0.85341 0.78707 0.79985 0.77314 1.17991 1.20387 1.15092 0.92833 0.89371 0.94122 0.87900 0.87894 0.75860 0.90645 0.89442 0.93169 0.91620 0.87431 0.84006 0.86481 0.89594 0.77358 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.90 71.98 0.71 -2.06 16 2 C -0.04 -0.84 5.94 29.85 0.18 -0.67 16 3 C 0.10 2.23 6.25 42.65 0.27 2.50 16 4 N -0.27 -6.91 11.54 -48.18 -0.56 -7.46 16 5 N -0.28 -6.92 12.51 37.02 0.46 -6.45 16 6 S 0.49 8.78 23.05 -56.49 -1.30 7.48 16 7 C -0.31 -6.62 6.81 24.62 0.17 -6.45 16 8 C 0.61 13.50 7.77 86.59 0.67 14.17 16 9 O -0.54 -14.55 14.56 -4.11 -0.06 -14.61 16 10 N -0.71 -12.03 4.35 -446.05 -1.94 -13.97 16 11 C 0.15 2.32 2.88 44.99 0.13 2.45 16 12 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 13 C -0.15 -1.71 9.48 71.98 0.68 -1.03 16 14 C 0.05 0.77 5.30 86.31 0.46 1.23 16 15 N -0.69 -17.00 6.12 -517.92 -3.17 -20.17 16 16 C 0.06 1.60 6.17 85.56 0.53 2.13 16 17 C 0.45 18.87 7.82 87.66 0.69 19.56 16 18 O -0.62 -33.04 15.78 -3.06 -0.05 -33.09 16 19 N -0.59 -26.49 5.09 -306.99 -1.56 -28.05 16 20 C -0.33 -18.87 10.16 84.04 0.85 -18.01 16 21 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 22 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 23 N -0.94 -56.05 13.96 21.66 0.30 -55.75 16 24 Si 0.97 37.42 27.74 68.60 1.90 39.33 16 25 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 26 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.10 2.06 6.48 -2.38 -0.02 2.04 16 33 H 0.41 5.23 7.58 -92.71 -0.70 4.53 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.34 9.01 7.28 -89.69 -0.65 8.36 16 40 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.39 14.17 5.76 -92.71 -0.53 13.64 16 43 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -82.54 379.33 -1.04 -83.58 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.87 Total: 35.80 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.80 Total: 13.36 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -6.46 Total: -131.85 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -0.11 Total: -47.70 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 1.90 Total: 39.33 kcal Atomic # 16 Polarization: 8.78 SS G_CDS: -1.30 Total: 7.48 kcal Total: -82.54 -1.04 -83.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268692547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.638 kcal (2) G-P(sol) polarization free energy of solvation -82.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds