Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47493 * 270.00581 * 3 2 1 5 5 H 1.48500 * 109.47022 * 30.00621 * 3 2 1 6 6 H 1.48498 * 109.46980 * 150.00138 * 3 2 1 7 7 C 1.37875 * 120.00753 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99568 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00422 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47056 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47169 * 179.97438 * 10 9 7 12 12 C 1.46701 * 124.33269 * 89.99858 * 11 10 9 13 13 C 1.54412 * 105.65031 * 162.91250 * 12 11 10 14 14 F 1.39899 * 113.63088 * 148.03091 * 13 12 11 15 15 C 1.53983 * 108.80994 * 276.57672 * 13 12 11 16 16 N 1.47151 * 106.71665 * 135.48252 * 15 13 12 17 17 C 1.46906 * 110.99668 * 218.89395 * 16 15 13 18 18 C 1.50700 * 109.47059 * 191.53214 * 17 16 15 19 19 C 1.41377 * 128.00812 * 89.99758 * 18 17 16 20 20 N 1.30183 * 106.39184 * 179.97438 * 19 18 17 21 21 O 1.20917 * 111.60524 * 0.02562 * 20 19 18 22 22 C 1.34036 * 111.56952 * 359.76210 * 21 20 19 23 23 C 1.47050 * 109.20879 * 341.59197 * 16 15 13 24 24 C 1.53589 * 107.99780 * 0.82414 * 23 16 15 25 25 F 1.39894 * 112.43591 * 139.08570 * 24 23 16 26 26 C 1.35514 * 124.15667 * 270.47520 * 11 10 9 27 27 O 1.21278 * 125.49104 * 0.41908 * 26 11 10 28 28 H 0.96993 * 120.00290 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47241 * 59.99616 * 9 7 2 30 30 H 1.08999 * 109.46858 * 299.99247 * 9 7 2 31 31 H 1.09003 * 109.47479 * 59.99584 * 10 9 7 32 32 H 1.09001 * 109.47097 * 299.99869 * 10 9 7 33 33 H 1.08993 * 110.21568 * 43.86403 * 12 11 10 34 34 H 1.08998 * 110.28026 * 281.98696 * 12 11 10 35 35 H 1.08994 * 110.01035 * 16.16947 * 15 13 12 36 36 H 1.08997 * 110.00765 * 254.79402 * 15 13 12 37 37 H 1.09003 * 109.46997 * 311.52784 * 17 16 15 38 38 H 1.08999 * 109.47193 * 71.52748 * 17 16 15 39 39 H 1.07997 * 126.80671 * 359.94281 * 19 18 17 40 40 H 1.08001 * 126.77922 * 180.28505 * 22 21 20 41 41 H 1.09001 * 109.76656 * 120.45868 * 23 16 15 42 42 H 1.08998 * 109.76698 * 241.17968 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 0.0000 10 6 4.0217 -2.6363 -0.0001 11 7 5.4867 -2.6363 -0.0001 12 6 6.3141 -2.6363 1.2113 13 6 7.7227 -3.0731 0.7536 14 9 8.7579 -2.4970 1.4977 15 6 7.7692 -4.6109 0.6893 16 7 8.4434 -4.9617 -0.5707 17 6 7.8113 -6.1299 -1.1984 18 6 8.6845 -6.6315 -2.3196 19 6 9.7198 -7.5920 -2.2537 20 7 10.1921 -7.7066 -3.4614 21 8 9.6157 -6.9784 -4.2358 22 6 8.6557 -6.2701 -3.6247 23 6 8.4178 -3.8005 -1.4727 24 6 7.7104 -2.6487 -0.7434 25 9 8.3362 -1.4162 -0.9586 26 6 6.2475 -2.6269 -1.1215 27 8 5.8257 -2.6101 -2.2584 28 1 -0.4850 0.8400 0.0004 29 1 3.8746 -0.6806 0.8904 30 1 3.8753 -0.6795 -0.8895 31 1 3.6587 -3.1501 -0.8903 32 1 3.6581 -3.1504 0.8897 33 1 5.9177 -3.3451 1.9382 34 1 6.3518 -1.6362 1.6431 35 1 6.7570 -5.0152 0.6959 36 1 8.3333 -5.0026 1.5357 37 1 7.6854 -6.9177 -0.4557 38 1 6.8369 -5.8460 -1.5958 39 1 10.0533 -8.1247 -1.3754 40 1 7.9913 -5.5521 -4.0823 41 1 9.4368 -3.5067 -1.7243 42 1 7.8716 -4.0519 -2.3818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272709979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = -35.625433 kcal Electronic energy + Delta-G solvation = -30714.783200 eV Core-core repulsion = 26142.096491 eV Total energy + Delta-G solvation = -4572.686709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.63872 -47.63280 -45.23340 -40.96453 -38.37605 -36.59165 -34.80717 -33.59449 -32.46673 -31.66802 -30.23015 -29.72926 -27.33807 -26.21846 -25.08023 -23.37525 -22.52911 -21.74735 -21.39767 -20.92012 -19.86314 -18.17583 -17.98807 -17.80359 -17.13962 -16.77300 -16.60096 -16.07108 -15.80609 -15.53954 -15.30187 -15.06654 -14.76965 -14.63693 -14.39712 -14.11771 -14.02614 -13.88244 -13.48124 -13.25323 -13.22149 -12.90292 -12.80253 -12.75758 -12.50565 -12.14007 -11.87371 -11.55194 -11.52733 -11.17848 -10.95661 -10.72711 -10.63355 -10.30765 -9.98863 -9.89279 -9.79475 -9.41723 -8.98299 -8.67276 -8.66248 -6.18183 -4.18936 1.15712 1.89026 2.13494 2.67300 2.90345 3.08923 3.24098 3.26140 3.31551 3.34292 3.35883 3.59681 3.74958 3.97253 4.08489 4.23337 4.32233 4.34140 4.46340 4.74211 4.77818 4.89291 4.98729 5.07006 5.15292 5.16636 5.21072 5.21986 5.33939 5.41059 5.51979 5.56442 5.67791 5.99188 6.17124 6.24647 6.26315 6.35713 6.76559 7.05649 7.20543 7.57155 7.86777 7.93110 8.33205 8.82922 9.43065 10.94439 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.003053 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.279845 B = 9167.894274 C = 9793.183082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.027 4.027 10 C 0.137 3.863 11 N -0.602 5.602 12 C 0.087 3.913 13 C 0.083 3.917 14 F -0.158 7.158 15 C 0.034 3.966 16 N -0.514 5.514 17 C 0.122 3.878 18 C -0.197 4.197 19 C 0.010 3.990 20 N -0.369 5.369 21 O 0.097 5.903 22 C -0.047 4.047 23 C 0.036 3.964 24 C 0.052 3.948 25 F -0.157 7.157 26 C 0.507 3.493 27 O -0.490 6.490 28 H 0.266 0.734 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.190 0.810 40 H 0.216 0.784 41 H 0.106 0.894 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.811 -13.642 1.283 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.065 4.065 10 C 0.018 3.982 11 N -0.336 5.336 12 C -0.038 4.038 13 C 0.062 3.938 14 F -0.138 7.138 15 C -0.094 4.094 16 N -0.237 5.237 17 C -0.005 4.005 18 C -0.201 4.201 19 C -0.169 4.169 20 N -0.073 5.073 21 O 0.033 5.967 22 C -0.129 4.129 23 C -0.093 4.093 24 C 0.028 3.972 25 F -0.137 7.137 26 C 0.289 3.711 27 O -0.363 6.363 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.207 0.793 40 H 0.232 0.768 41 H 0.124 0.876 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.825 -14.370 0.224 24.486 hybrid contribution -0.864 1.963 0.584 2.223 sum 18.961 -12.407 0.807 22.674 Atomic orbital electron populations 1.69888 1.06252 1.27187 1.50192 1.24954 0.94717 0.99150 0.94128 0.86795 0.80229 0.83588 0.78791 1.20098 1.21150 1.19145 1.20871 0.88519 0.94814 1.52206 0.90671 1.19927 0.97679 0.91771 0.97104 1.21809 0.72476 1.00956 1.02965 1.48794 1.08199 1.71792 1.04853 1.22540 0.87387 1.04688 0.89144 1.22544 0.86965 0.94573 0.89674 1.92942 1.58615 1.85417 1.76852 1.23334 1.00511 0.90875 0.94666 1.63272 1.53036 1.04044 1.03388 1.20563 0.93352 0.92938 0.93672 1.21135 1.01929 1.01931 0.95148 1.24940 0.95850 0.99706 0.96440 1.73899 1.18340 1.12537 1.02487 1.84841 1.36740 1.40295 1.34789 1.25994 0.94851 0.99093 0.93002 1.23140 1.02610 0.87683 0.95855 1.22889 0.93688 0.83997 0.96581 1.92960 1.82677 1.42564 1.95517 1.20568 0.87002 0.77771 0.85713 1.90770 1.77297 1.48276 1.19915 0.92465 0.96215 0.96421 0.89870 0.90059 0.87630 0.88791 0.89865 0.87029 0.88289 0.92099 0.79254 0.76765 0.87631 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.53 -14.22 9.66 -34.44 -0.33 -14.55 16 8 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.03 -0.60 4.36 -27.88 -0.12 -0.72 16 10 C 0.14 2.40 5.88 -4.04 -0.02 2.37 16 11 N -0.60 -8.92 2.95 -172.27 -0.51 -9.43 16 12 C 0.09 0.97 6.41 -3.19 -0.02 0.94 16 13 C 0.08 0.88 1.97 -87.98 -0.17 0.70 16 14 F -0.16 -1.86 17.12 2.25 0.04 -1.83 16 15 C 0.03 0.26 5.96 -3.17 -0.02 0.24 16 16 N -0.51 -4.39 5.10 -234.71 -1.20 -5.59 16 17 C 0.12 0.87 5.07 -4.97 -0.03 0.85 16 18 C -0.20 -1.57 5.40 -104.42 -0.56 -2.13 16 19 C 0.01 0.09 12.16 -17.06 -0.21 -0.12 16 20 N -0.37 -3.90 12.07 30.36 0.37 -3.54 16 21 O 0.10 0.95 11.20 17.19 0.19 1.14 16 22 C -0.05 -0.37 11.44 29.74 0.34 -0.03 16 23 C 0.04 0.37 5.74 -3.44 -0.02 0.35 16 24 C 0.05 0.68 1.71 -89.88 -0.15 0.53 16 25 F -0.16 -2.39 16.95 2.25 0.04 -2.35 16 26 C 0.51 8.00 7.02 -10.45 -0.07 7.93 16 27 O -0.49 -9.29 17.21 5.56 0.10 -9.20 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 30 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 31 H 0.08 1.53 7.97 -51.93 -0.41 1.12 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.11 0.84 7.85 -51.93 -0.41 0.43 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.56 7.17 -51.93 -0.37 0.18 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.53 8.06 -51.93 -0.42 0.11 16 38 H 0.06 0.47 7.95 -51.93 -0.41 0.05 16 39 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.22 1.17 7.77 -52.49 -0.41 0.77 16 41 H 0.11 1.09 8.12 -51.93 -0.42 0.67 16 42 H 0.09 0.89 5.71 -51.93 -0.30 0.59 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -33.54 357.19 -6.17 -39.72 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -5.20 Total: -3.41 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.49 Total: -1.66 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.57 Total: -44.60 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.29 Total: -8.06 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.54 -6.17 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272709979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.092 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds