Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99798 * 2 1 4 4 H 1.48495 * 109.47493 * 270.00581 * 3 2 1 5 5 H 1.48500 * 109.47022 * 30.00621 * 3 2 1 6 6 H 1.48498 * 109.46980 * 150.00138 * 3 2 1 7 7 C 1.37875 * 120.00753 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99568 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00422 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47056 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47169 * 179.97438 * 10 9 7 12 12 C 1.46701 * 124.33269 * 89.99858 * 11 10 9 13 13 C 1.54412 * 105.65031 * 162.91250 * 12 11 10 14 14 F 1.39899 * 113.63088 * 148.03091 * 13 12 11 15 15 C 1.53983 * 108.80994 * 276.57672 * 13 12 11 16 16 N 1.47151 * 106.71665 * 135.48252 * 15 13 12 17 17 C 1.46906 * 110.99668 * 218.89395 * 16 15 13 18 18 C 1.50700 * 109.47059 * 191.53214 * 17 16 15 19 19 C 1.41377 * 128.00812 * 89.99758 * 18 17 16 20 20 N 1.30183 * 106.39184 * 179.97438 * 19 18 17 21 21 O 1.20917 * 111.60524 * 0.02562 * 20 19 18 22 22 C 1.34036 * 111.56952 * 359.76210 * 21 20 19 23 23 C 1.47050 * 109.20879 * 341.59197 * 16 15 13 24 24 C 1.53589 * 107.99780 * 0.82414 * 23 16 15 25 25 F 1.39894 * 112.43591 * 139.08570 * 24 23 16 26 26 C 1.35514 * 124.15667 * 270.47520 * 11 10 9 27 27 O 1.21278 * 125.49104 * 0.41908 * 26 11 10 28 28 H 0.96993 * 120.00290 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47241 * 59.99616 * 9 7 2 30 30 H 1.08999 * 109.46858 * 299.99247 * 9 7 2 31 31 H 1.09003 * 109.47479 * 59.99584 * 10 9 7 32 32 H 1.09001 * 109.47097 * 299.99869 * 10 9 7 33 33 H 1.08993 * 110.21568 * 43.86403 * 12 11 10 34 34 H 1.08998 * 110.28026 * 281.98696 * 12 11 10 35 35 H 1.08994 * 110.01035 * 16.16947 * 15 13 12 36 36 H 1.08997 * 110.00765 * 254.79402 * 15 13 12 37 37 H 1.09003 * 109.46997 * 311.52784 * 17 16 15 38 38 H 1.08999 * 109.47193 * 71.52748 * 17 16 15 39 39 H 1.07997 * 126.80671 * 359.94281 * 19 18 17 40 40 H 1.08001 * 126.77922 * 180.28505 * 22 21 20 41 41 H 1.09001 * 109.76656 * 120.45868 * 23 16 15 42 42 H 1.08998 * 109.76698 * 241.17968 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 0.0000 10 6 4.0217 -2.6363 -0.0001 11 7 5.4867 -2.6363 -0.0001 12 6 6.3141 -2.6363 1.2113 13 6 7.7227 -3.0731 0.7536 14 9 8.7579 -2.4970 1.4977 15 6 7.7692 -4.6109 0.6893 16 7 8.4434 -4.9617 -0.5707 17 6 7.8113 -6.1299 -1.1984 18 6 8.6845 -6.6315 -2.3196 19 6 9.7198 -7.5920 -2.2537 20 7 10.1921 -7.7066 -3.4614 21 8 9.6157 -6.9784 -4.2358 22 6 8.6557 -6.2701 -3.6247 23 6 8.4178 -3.8005 -1.4727 24 6 7.7104 -2.6487 -0.7434 25 9 8.3362 -1.4162 -0.9586 26 6 6.2475 -2.6269 -1.1215 27 8 5.8257 -2.6101 -2.2584 28 1 -0.4850 0.8400 0.0004 29 1 3.8746 -0.6806 0.8904 30 1 3.8753 -0.6795 -0.8895 31 1 3.6587 -3.1501 -0.8903 32 1 3.6581 -3.1504 0.8897 33 1 5.9177 -3.3451 1.9382 34 1 6.3518 -1.6362 1.6431 35 1 6.7570 -5.0152 0.6959 36 1 8.3333 -5.0026 1.5357 37 1 7.6854 -6.9177 -0.4557 38 1 6.8369 -5.8460 -1.5958 39 1 10.0533 -8.1247 -1.3754 40 1 7.9913 -5.5521 -4.0823 41 1 9.4368 -3.5067 -1.7243 42 1 7.8716 -4.0519 -2.3818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272709979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = -59.059636 kcal Electronic energy + Delta-G solvation = -30715.799383 eV Core-core repulsion = 26142.096491 eV Total energy + Delta-G solvation = -4573.702892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.63761 -48.60893 -45.88323 -41.99543 -39.29191 -37.78883 -35.85531 -35.05472 -33.65270 -32.74720 -31.23516 -30.83377 -28.29623 -27.23178 -26.39094 -24.14268 -23.54093 -22.64901 -22.50053 -21.86621 -21.08965 -19.24819 -18.81789 -18.74031 -18.49648 -17.93562 -17.62449 -16.85979 -16.85131 -16.55294 -16.46871 -16.05978 -15.83139 -15.62506 -15.52614 -15.39704 -15.05486 -14.82741 -14.76435 -14.56531 -14.22289 -14.09542 -13.80354 -13.61767 -13.56341 -13.30401 -13.01031 -12.75025 -12.48849 -12.36822 -12.17421 -12.13100 -11.88132 -11.78458 -11.53908 -11.29614 -11.04156 -10.83315 -10.49884 -9.95953 -9.63345 -8.35551 -6.39781 0.53364 0.91191 1.27574 1.29511 1.32194 1.41127 1.52766 2.17548 2.28895 2.34717 2.40223 2.53835 2.76165 2.93049 3.00232 3.22313 3.38196 3.43772 3.74045 3.90428 3.92604 4.10988 4.15441 4.23861 4.26985 4.38114 4.44842 4.50892 4.53802 4.64245 4.69887 4.73470 4.74730 4.78538 4.94649 5.12756 5.18961 5.33795 5.50407 5.57668 5.64913 5.77457 6.17016 6.61464 6.69348 7.25567 7.29596 8.80168 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.003053 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.279845 B = 9167.894274 C = 9793.183082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.250 1.250 7 C -0.527 4.527 8 H 0.050 0.950 9 C -0.023 4.023 10 C 0.149 3.851 11 N -0.600 5.600 12 C 0.081 3.919 13 C 0.092 3.908 14 F -0.164 7.164 15 C 0.038 3.962 16 N -0.512 5.512 17 C 0.124 3.876 18 C -0.201 4.201 19 C 0.014 3.986 20 N -0.401 5.401 21 O 0.079 5.921 22 C -0.048 4.048 23 C 0.042 3.958 24 C 0.043 3.957 25 F -0.174 7.174 26 C 0.500 3.500 27 O -0.532 6.532 28 H 0.268 0.732 29 H 0.028 0.972 30 H -0.004 1.004 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.126 0.874 38 H 0.057 0.943 39 H 0.214 0.786 40 H 0.232 0.768 41 H 0.104 0.896 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.396 -14.545 3.302 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.174 1.174 7 C -0.566 4.566 8 H 0.068 0.932 9 C -0.061 4.061 10 C 0.029 3.971 11 N -0.333 5.333 12 C -0.042 4.042 13 C 0.072 3.928 14 F -0.143 7.143 15 C -0.089 4.089 16 N -0.236 5.236 17 C -0.003 4.003 18 C -0.206 4.206 19 C -0.165 4.165 20 N -0.108 5.108 21 O 0.019 5.981 22 C -0.130 4.130 23 C -0.087 4.087 24 C 0.019 3.981 25 F -0.154 7.154 26 C 0.284 3.716 27 O -0.408 6.408 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.015 0.985 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.166 0.834 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.231 0.769 40 H 0.248 0.752 41 H 0.122 0.878 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.437 -15.274 2.265 26.419 hybrid contribution -1.399 2.221 -0.053 2.626 sum 20.038 -13.053 2.212 24.017 Atomic orbital electron populations 1.70014 1.07904 1.28185 1.52102 1.25806 0.95463 1.02853 0.94195 0.85847 0.79674 0.79557 0.78684 1.20488 1.20345 1.17384 1.21224 0.90936 0.93737 1.50686 0.93211 1.19826 0.94806 0.95208 0.96257 1.21434 0.74278 0.97571 1.03796 1.48720 1.07339 1.71075 1.06167 1.22864 0.87285 1.05928 0.88144 1.22608 0.86413 0.96308 0.87463 1.92938 1.58858 1.85816 1.76727 1.23491 1.02085 0.88391 0.94938 1.63350 1.53512 1.03431 1.03333 1.20653 0.92615 0.92988 0.94017 1.21294 1.02031 1.01892 0.95358 1.25392 0.95291 0.99298 0.96495 1.73896 1.19681 1.13783 1.03489 1.84809 1.37369 1.40762 1.35177 1.26419 0.94395 0.98794 0.93407 1.23086 1.02028 0.87562 0.96028 1.23085 0.91769 0.84042 0.99184 1.92919 1.82755 1.43912 1.95841 1.21080 0.88373 0.76809 0.85289 1.90739 1.78392 1.50003 1.21621 0.92321 0.95337 0.98547 0.91265 0.87152 0.83417 0.89236 0.88064 0.84412 0.85605 0.92504 0.76933 0.75185 0.87755 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.23 13.96 21.45 0.30 -56.93 16 2 C 0.02 0.85 5.47 84.65 0.46 1.32 16 3 Si 0.94 44.13 27.47 68.60 1.88 46.01 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 7 C -0.53 -28.67 9.66 25.60 0.25 -28.42 16 8 H 0.05 2.89 7.99 -2.91 -0.02 2.86 16 9 C -0.02 -1.00 4.36 29.85 0.13 -0.87 16 10 C 0.15 4.99 5.88 86.38 0.51 5.50 16 11 N -0.60 -16.47 2.95 -816.90 -2.41 -18.88 16 12 C 0.08 1.50 6.41 86.82 0.56 2.06 16 13 C 0.09 1.66 1.97 -9.08 -0.02 1.65 16 14 F -0.16 -3.36 17.12 44.97 0.77 -2.59 16 15 C 0.04 0.42 5.96 86.59 0.52 0.94 16 16 N -0.51 -7.11 5.10 -896.48 -4.57 -11.68 16 17 C 0.12 1.39 5.07 85.56 0.43 1.82 16 18 C -0.20 -2.80 5.40 -19.74 -0.11 -2.91 16 19 C 0.01 0.22 12.16 85.71 1.04 1.26 16 20 N -0.40 -8.22 12.07 -59.26 -0.72 -8.94 16 21 O 0.08 1.53 11.20 71.67 0.80 2.34 16 22 C -0.05 -0.71 11.44 67.18 0.77 0.06 16 23 C 0.04 0.81 5.74 86.47 0.50 1.30 16 24 C 0.04 1.05 1.71 -10.31 -0.02 1.03 16 25 F -0.17 -5.19 16.95 44.97 0.76 -4.42 16 26 C 0.50 15.29 7.02 87.67 0.62 15.91 16 27 O -0.53 -20.33 17.21 -3.02 -0.05 -20.38 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 30 H 0.00 -0.19 7.57 -2.39 -0.02 -0.21 16 31 H 0.07 2.52 7.97 -2.39 -0.02 2.50 16 32 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.15 1.55 7.85 -2.39 -0.02 1.53 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.10 0.83 7.17 -2.39 -0.02 0.81 16 36 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.13 0.77 8.06 -2.39 -0.02 0.75 16 38 H 0.06 0.72 7.95 -2.39 -0.02 0.70 16 39 H 0.21 1.92 8.06 -2.91 -0.02 1.89 16 40 H 0.23 2.38 7.77 -2.91 -0.02 2.36 16 41 H 0.10 2.03 8.12 -2.39 -0.02 2.01 16 42 H 0.08 1.65 5.71 -2.39 -0.01 1.63 16 Total: -1.00 -74.76 357.19 3.41 -71.35 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.01 Total: 3.48 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.64 Total: 0.65 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -7.40 Total: -96.43 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.75 Total: -18.05 kcal Atomic # 9 Polarization: -8.54 SS G_CDS: 1.53 Total: -7.01 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -74.76 3.41 -71.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272709979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.292 kcal (2) G-P(sol) polarization free energy of solvation -74.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds