Wall clock time and date at job start Sat Apr 11 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30219 * 126.79208 * 2 1 4 4 O 1.20922 * 111.64803 * 180.26588 * 3 2 1 5 5 C 1.34069 * 111.54808 * 359.72646 * 4 3 2 6 6 Cl 1.73600 * 126.79323 * 179.97438 * 5 4 3 7 7 C 1.35671 * 106.41012 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.01595 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47309 * 90.01697 * 8 7 5 10 10 O 1.21279 * 120.00054 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99780 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99789 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47146 * 179.97438 * 12 11 9 14 14 H 1.09005 * 109.69787 * 60.68500 * 13 12 11 15 15 C 1.53631 * 109.66526 * 181.27401 * 13 12 11 16 16 C 1.53042 * 109.24026 * 174.55381 * 15 13 12 17 17 C 1.53039 * 109.53673 * 298.51184 * 16 15 13 18 18 C 1.53193 * 109.31460 * 61.36744 * 17 16 15 19 19 N 1.46920 * 109.59210 * 300.32989 * 13 12 11 20 20 C 1.36942 * 120.62866 * 6.62384 * 19 13 12 21 21 H 1.07992 * 119.99851 * 304.71108 * 20 19 13 22 22 C 1.38812 * 119.99921 * 124.70936 * 20 19 13 23 23 N 1.31616 * 120.00130 * 156.16490 * 22 20 19 24 24 Si 1.86804 * 120.00054 * 336.16674 * 22 20 19 25 25 H 1.48501 * 109.46760 * 275.67109 * 24 22 20 26 26 H 1.48494 * 109.47140 * 35.67187 * 24 22 20 27 27 H 1.48506 * 109.47057 * 155.67304 * 24 22 20 28 28 H 1.09004 * 109.47409 * 270.17940 * 1 2 3 29 29 H 1.08998 * 109.46933 * 30.18134 * 1 2 3 30 30 H 1.09001 * 109.47434 * 150.18108 * 1 2 3 31 31 H 1.09004 * 109.46975 * 330.02109 * 8 7 5 32 32 H 1.09003 * 109.47486 * 210.02158 * 8 7 5 33 33 H 0.97002 * 120.00558 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.46737 * 59.99991 * 12 11 9 35 35 H 1.08991 * 109.47528 * 300.00000 * 12 11 9 36 36 H 1.08998 * 109.62737 * 54.56353 * 15 13 12 37 37 H 1.08996 * 109.45715 * 294.43880 * 15 13 12 38 38 H 1.08997 * 109.45580 * 178.49231 * 16 15 13 39 39 H 1.08996 * 109.45202 * 58.52556 * 16 15 13 40 40 H 1.09000 * 109.49950 * 301.41326 * 17 16 15 41 41 H 1.08998 * 109.49496 * 181.32024 * 17 16 15 42 42 H 1.09000 * 109.58645 * 185.57706 * 18 17 16 43 43 H 1.08997 * 109.70047 * 65.22096 * 18 17 16 44 44 H 0.96995 * 120.00560 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7269 -0.0052 5 6 3.6036 -0.6054 -0.0035 6 17 5.1011 -1.4836 -0.0100 7 6 2.3531 -1.1315 0.0031 8 6 1.9579 -2.5857 0.0069 9 6 1.8324 -3.0685 1.4290 10 8 2.0427 -2.3065 2.3488 11 7 1.4866 -4.3470 1.6786 12 6 1.3652 -4.8164 3.0610 13 6 0.9639 -6.2928 3.0648 14 1 1.7286 -6.8827 2.5594 15 6 0.8042 -6.7814 4.5126 16 6 0.2723 -8.2164 4.5048 17 6 -1.1016 -8.2493 3.8314 18 6 -0.9663 -7.7760 2.3807 19 7 -0.3216 -6.4558 2.3723 20 6 -0.9049 -5.3986 1.7263 21 1 -1.0997 -4.4803 2.2603 22 6 -1.2459 -5.5073 0.3851 23 7 -2.1890 -4.7396 -0.1185 24 14 -0.3664 -6.7432 -0.7051 25 1 0.8984 -6.1485 -1.2070 26 1 -0.0612 -7.9663 0.0797 27 1 -1.2374 -7.0972 -1.8547 28 1 -0.3634 0.0032 1.0277 29 1 -0.3633 0.8883 -0.5166 30 1 -0.3634 -0.8916 -0.5110 31 1 2.7193 -3.1704 -0.5094 32 1 1.0016 -2.7038 -0.5026 33 1 1.3188 -4.9565 0.9429 34 1 0.6038 -4.2319 3.5776 35 1 2.3215 -4.6982 3.5702 36 1 0.1028 -6.1362 5.0415 37 1 1.7719 -6.7548 5.0136 38 1 0.1830 -8.5760 5.5299 39 1 0.9619 -8.8562 3.9543 40 1 -1.7851 -7.5903 4.3669 41 1 -1.4902 -9.2675 3.8472 42 1 -1.9544 -7.7030 1.9265 43 1 -0.3571 -8.4837 1.8186 44 1 -2.4275 -4.8157 -1.0556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491226029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:40 Heat of formation + Delta-G solvation = 34.966246 kcal Electronic energy + Delta-G solvation = -28696.734337 eV Core-core repulsion = 24678.905393 eV Total energy + Delta-G solvation = -4017.828944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -44.95403 -39.27337 -37.92630 -37.20312 -35.23978 -34.17902 -33.03248 -32.32487 -31.03312 -30.74086 -28.93267 -28.36062 -26.06022 -24.55044 -22.38430 -22.14729 -21.37513 -20.79436 -19.94829 -19.28718 -17.81192 -17.65244 -16.82624 -16.20175 -15.65857 -15.56814 -15.11454 -14.87493 -14.26254 -13.89461 -13.62524 -13.48029 -13.27420 -13.20834 -13.08034 -12.94652 -12.64431 -12.56598 -12.40819 -12.29796 -12.21411 -11.89616 -11.62942 -11.54000 -11.26457 -10.89583 -10.83183 -10.78365 -10.53183 -10.22361 -9.92857 -9.90009 -9.83315 -9.64523 -9.40476 -9.01709 -8.65382 -8.22936 -6.59045 -6.19624 -3.77655 1.06938 1.29826 2.16618 3.12482 3.21902 3.30782 3.34701 3.62862 3.93865 4.14886 4.34510 4.66863 4.81781 4.91485 5.04692 5.08849 5.32763 5.39255 5.45131 5.49475 5.55992 5.70453 5.71607 5.78701 5.81963 5.89122 5.91748 5.98668 6.15549 6.20951 6.24971 6.28310 6.43109 6.45906 6.48634 6.59241 6.78779 6.82041 7.00675 7.17937 7.92498 8.14264 8.23464 8.41625 8.85638 8.86848 9.49175 10.06791 10.92523 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.003802 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.184622 B = 7362.636674 C = 8078.906731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.050 3.950 3 N -0.353 5.353 4 O 0.105 5.895 5 C 0.005 3.995 6 Cl 0.042 6.958 7 C -0.135 4.135 8 C -0.073 4.073 9 C 0.516 3.484 10 O -0.556 6.556 11 N -0.688 5.688 12 C 0.141 3.859 13 C 0.153 3.847 14 H 0.033 0.967 15 C -0.126 4.126 16 C -0.108 4.108 17 C -0.137 4.137 18 C 0.141 3.859 19 N -0.600 5.600 20 C -0.268 4.268 21 H 0.071 0.929 22 C 0.054 3.946 23 N -0.883 5.883 24 Si 0.839 3.161 25 H -0.282 1.282 26 H -0.255 1.255 27 H -0.294 1.294 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.407 0.593 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.112 0.306 0.071 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 N -0.061 5.061 4 O 0.039 5.961 5 C -0.085 4.085 6 Cl 0.070 6.930 7 C -0.140 4.140 8 C -0.113 4.113 9 C 0.301 3.699 10 O -0.435 6.435 11 N -0.338 5.338 12 C 0.017 3.983 13 C 0.047 3.953 14 H 0.051 0.949 15 C -0.166 4.166 16 C -0.146 4.146 17 C -0.176 4.176 18 C 0.016 3.984 19 N -0.326 5.326 20 C -0.397 4.397 21 H 0.088 0.912 22 C -0.149 4.149 23 N -0.521 5.521 24 Si 0.666 3.334 25 H -0.209 1.209 26 H -0.180 1.180 27 H -0.220 1.220 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.136 0.864 33 H 0.244 0.756 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.059 2.134 0.570 9.325 hybrid contribution 0.428 -1.932 -1.125 2.276 sum 9.487 0.203 -0.555 9.506 Atomic orbital electron populations 1.20268 0.84873 1.04144 1.04360 1.23307 0.99242 0.87594 1.00695 1.73883 0.88449 1.22878 1.20853 1.84864 1.22236 1.20482 1.68491 1.24372 0.90532 0.84944 1.08666 1.98430 1.28530 1.69238 1.96804 1.20176 0.89921 0.97069 1.06824 1.20018 1.05150 0.89086 0.97081 1.20019 0.77313 0.82448 0.90083 1.90653 1.51766 1.54944 1.46159 1.45861 1.67367 1.11006 1.09602 1.21181 0.99621 0.94630 0.82880 1.21035 0.89215 0.93041 0.92048 0.94914 1.21980 1.00092 0.96760 0.97764 1.21363 0.97355 0.96594 0.99287 1.22029 0.96591 0.99694 0.99276 1.21348 0.97086 0.87030 0.92944 1.44315 1.18664 1.07695 1.61911 1.18537 1.35510 0.94726 0.90937 0.91163 1.25915 0.96360 0.95613 0.97030 1.69917 1.27105 1.40665 1.14409 0.87451 0.80530 0.84109 0.81307 1.20877 1.17954 1.22032 0.89381 0.90436 0.89088 0.87919 0.86397 0.75628 0.91310 0.92691 0.91728 0.92820 0.93253 0.92866 0.92071 0.93258 0.91712 0.95772 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.39 36.00 0.37 -0.75 16 2 C 0.05 0.81 7.32 -82.12 -0.60 0.21 16 3 N -0.35 -5.82 12.07 33.44 0.40 -5.42 16 4 O 0.10 1.64 11.20 17.10 0.19 1.83 16 5 C 0.00 0.07 8.12 29.81 0.24 0.32 16 6 Cl 0.04 0.52 29.23 -51.86 -1.52 -1.00 16 7 C -0.13 -2.16 4.82 -104.38 -0.50 -2.66 16 8 C -0.07 -1.16 6.10 -29.03 -0.18 -1.34 16 9 C 0.52 9.72 7.82 -10.98 -0.09 9.63 16 10 O -0.56 -11.96 16.03 5.56 0.09 -11.87 16 11 N -0.69 -12.97 4.15 -60.30 -0.25 -13.22 16 12 C 0.14 2.57 4.55 -4.04 -0.02 2.55 16 13 C 0.15 2.70 3.03 -67.38 -0.20 2.49 16 14 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 15 C -0.13 -1.93 5.40 -26.38 -0.14 -2.07 16 16 C -0.11 -1.56 5.88 -26.69 -0.16 -1.71 16 17 C -0.14 -2.19 6.08 -26.61 -0.16 -2.35 16 18 C 0.14 2.71 4.70 -3.71 -0.02 2.70 16 19 N -0.60 -12.32 2.16 -164.52 -0.35 -12.67 16 20 C -0.27 -6.37 6.36 -15.06 -0.10 -6.47 16 21 H 0.07 1.93 7.40 -52.49 -0.39 1.54 16 22 C 0.05 1.33 5.02 -17.43 -0.09 1.24 16 23 N -0.88 -23.37 13.97 55.49 0.78 -22.59 16 24 Si 0.84 18.40 26.35 -169.99 -4.48 13.92 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.25 -5.45 5.08 56.52 0.29 -5.16 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.27 7.65 -51.93 -0.40 0.88 16 31 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.12 1.86 7.65 -51.93 -0.40 1.46 16 33 H 0.41 7.86 5.76 -40.82 -0.23 7.62 16 34 H 0.07 1.40 7.57 -51.93 -0.39 1.01 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.35 7.73 -51.93 -0.40 0.95 16 43 H 0.02 0.47 6.54 -51.93 -0.34 0.13 16 44 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -27.72 368.23 -7.68 -35.40 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.45 Total: 8.28 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.64 Total: 1.79 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.57 Total: -53.91 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.28 Total: -10.03 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.48 Total: 13.92 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -1.52 Total: -1.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.72 -7.68 -35.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491226029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.368 kcal (2) G-P(sol) polarization free energy of solvation -27.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds