Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30216 * 126.78940 * 2 1 4 4 O 1.20913 * 111.65169 * 179.97438 * 3 2 1 5 5 C 1.34075 * 111.55133 * 0.02562 * 4 3 2 6 6 Cl 1.73595 * 126.79869 * 179.97438 * 5 4 3 7 7 C 1.35685 * 106.40296 * 359.97438 * 5 4 3 8 8 C 1.50691 * 128.01123 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47251 * 89.97789 * 8 7 5 10 10 O 1.21275 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00043 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99830 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47080 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.58734 * 300.44705 * 13 12 11 15 15 C 1.53192 * 109.58832 * 180.16160 * 13 12 11 16 16 C 1.53042 * 109.31459 * 185.57933 * 15 13 12 17 17 C 1.53037 * 109.53818 * 61.36527 * 16 15 13 18 18 C 1.53193 * 109.31340 * 298.63614 * 17 16 15 19 19 N 1.46926 * 109.58577 * 60.73079 * 13 12 11 20 20 C 1.36938 * 120.63133 * 353.39154 * 19 13 12 21 21 H 1.07999 * 119.99719 * 30.77548 * 20 19 13 22 22 C 1.38808 * 120.00189 * 210.77377 * 20 19 13 23 23 N 1.31616 * 120.00021 * 14.27536 * 22 20 19 24 24 Si 1.86799 * 119.99956 * 194.27948 * 22 20 19 25 25 H 1.48496 * 109.47297 * 59.99656 * 24 22 20 26 26 H 1.48501 * 109.47330 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46720 * 299.99834 * 24 22 20 28 28 H 1.09003 * 109.46789 * 90.02312 * 1 2 3 29 29 H 1.08999 * 109.46926 * 210.01791 * 1 2 3 30 30 H 1.08994 * 109.47329 * 330.02453 * 1 2 3 31 31 H 1.09003 * 109.47371 * 209.97688 * 8 7 5 32 32 H 1.09001 * 109.47629 * 329.97638 * 8 7 5 33 33 H 0.96998 * 119.99747 * 359.97438 * 11 9 8 34 34 H 1.08999 * 109.47308 * 299.99996 * 12 11 9 35 35 H 1.08998 * 109.47138 * 60.00249 * 12 11 9 36 36 H 1.09000 * 109.49729 * 305.53241 * 15 13 12 37 37 H 1.08994 * 109.49836 * 65.62647 * 15 13 12 38 38 H 1.08993 * 109.45887 * 181.38713 * 16 15 13 39 39 H 1.09000 * 109.46045 * 301.35998 * 16 15 13 40 40 H 1.08995 * 109.49860 * 58.58322 * 17 16 15 41 41 H 1.08996 * 109.49798 * 178.68470 * 17 16 15 42 42 H 1.08999 * 109.58852 * 174.42346 * 18 17 16 43 43 H 1.09001 * 109.58494 * 294.70733 * 18 17 16 44 44 H 0.97006 * 120.00154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7271 0.0005 5 6 3.6038 -0.6053 0.0004 6 17 5.1013 -1.4833 0.0003 7 6 2.3531 -1.1315 0.0003 8 6 1.9581 -2.5857 -0.0005 9 6 1.8272 -3.0714 1.4202 10 8 2.0347 -2.3116 2.3423 11 7 1.4795 -4.3502 1.6658 12 6 1.3528 -4.8224 3.0467 13 6 0.9504 -6.2986 3.0460 14 1 -0.0005 -6.4179 2.5267 15 6 0.8132 -6.7942 4.4890 16 6 0.5479 -8.3014 4.4835 17 6 1.7287 -9.0266 3.8340 18 6 1.8763 -8.5563 2.3835 19 7 1.9851 -7.0908 2.3673 20 6 3.0323 -6.4753 1.7350 21 1 3.4054 -5.5309 2.1028 22 6 3.6143 -7.0654 0.6215 23 7 3.0015 -8.0532 0.0043 24 14 5.2673 -6.4575 -0.0009 25 1 6.2879 -6.6195 1.0656 26 1 5.6677 -7.2462 -1.1937 27 1 5.1602 -5.0230 -0.3697 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3634 0.8901 0.5134 31 1 1.0037 -2.7028 -0.5139 32 1 2.7214 -3.1693 -0.5151 33 1 1.3132 -4.9578 0.9282 34 1 2.3075 -4.7059 3.5596 35 1 0.5900 -4.2386 3.5618 36 1 1.7350 -6.5890 5.0334 37 1 -0.0175 -6.2804 4.9727 38 1 0.4254 -8.6523 5.5081 39 1 -0.3606 -8.5082 3.9178 40 1 2.6419 -8.8004 4.3844 41 1 1.5496 -10.1016 3.8515 42 1 2.7739 -8.9943 1.9469 43 1 1.0028 -8.8642 1.8089 44 1 3.4081 -8.4653 -0.7741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491226030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 36.330811 kcal Electronic energy + Delta-G solvation = -28540.710843 eV Core-core repulsion = 24522.941071 eV Total energy + Delta-G solvation = -4017.769772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.03259 -39.33458 -37.78990 -37.14755 -35.34321 -34.15990 -33.11230 -32.40752 -30.90344 -29.96896 -29.05427 -28.48921 -25.92175 -24.67775 -22.30996 -22.10780 -21.46335 -20.71318 -19.85117 -19.11838 -17.88810 -17.73031 -16.86851 -16.06647 -15.85282 -15.49565 -15.21017 -14.48485 -14.13064 -13.97026 -13.55491 -13.52105 -13.45222 -13.20868 -13.03997 -12.87884 -12.75634 -12.51617 -12.36330 -12.19563 -12.06481 -11.91413 -11.54013 -11.22358 -11.02824 -10.85219 -10.82213 -10.59014 -10.34492 -10.19292 -10.04917 -10.03718 -9.62221 -9.51778 -9.39418 -9.05634 -8.63196 -8.27484 -6.71545 -5.89669 -3.35611 1.09209 1.24595 2.04470 3.11938 3.27083 3.35292 3.38217 3.56069 3.85305 4.03043 4.37495 4.53241 4.81008 4.94889 5.17805 5.27227 5.31611 5.38525 5.44206 5.47028 5.55578 5.60247 5.62719 5.66237 5.73513 5.93087 5.99610 6.03124 6.11198 6.27188 6.32611 6.37939 6.55886 6.66845 6.69569 6.81650 6.93685 7.12609 7.33551 7.60104 7.73668 8.04162 8.19049 8.35160 8.79760 9.10786 9.72596 10.30936 11.17301 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.004066 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.948775 B = 6885.488596 C = 8352.642543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 N -0.353 5.353 4 O 0.105 5.895 5 C 0.010 3.990 6 Cl 0.052 6.948 7 C -0.141 4.141 8 C -0.071 4.071 9 C 0.511 3.489 10 O -0.556 6.556 11 N -0.691 5.691 12 C 0.136 3.864 13 C 0.161 3.839 14 H 0.032 0.968 15 C -0.128 4.128 16 C -0.107 4.107 17 C -0.145 4.145 18 C 0.174 3.826 19 N -0.588 5.588 20 C -0.251 4.251 21 H 0.070 0.930 22 C 0.010 3.990 23 N -0.899 5.899 24 Si 0.888 3.112 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.278 1.278 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.416 0.584 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.083 0.917 43 H 0.018 0.982 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 7.998 -0.397 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 N -0.060 5.060 4 O 0.039 5.961 5 C -0.080 4.080 6 Cl 0.080 6.920 7 C -0.146 4.146 8 C -0.112 4.112 9 C 0.296 3.704 10 O -0.435 6.435 11 N -0.342 5.342 12 C 0.012 3.988 13 C 0.054 3.946 14 H 0.049 0.951 15 C -0.167 4.167 16 C -0.145 4.145 17 C -0.184 4.184 18 C 0.048 3.952 19 N -0.312 5.312 20 C -0.381 4.381 21 H 0.087 0.913 22 C -0.189 4.189 23 N -0.543 5.543 24 Si 0.717 3.283 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.204 1.204 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.253 0.747 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.687 9.656 0.092 10.734 hybrid contribution 1.195 -1.077 -0.668 1.742 sum -3.492 8.579 -0.577 9.280 Atomic orbital electron populations 1.20204 0.85358 1.04324 1.03409 1.23216 0.98985 0.87812 1.01551 1.73870 0.88562 1.22981 1.20604 1.84866 1.22090 1.20704 1.68404 1.24526 0.91233 0.84717 1.07505 1.98480 1.28179 1.68677 1.96615 1.20176 0.89999 0.96991 1.07433 1.20009 1.05010 0.89225 0.96938 1.20117 0.77567 0.82528 0.90177 1.90666 1.51286 1.55617 1.45978 1.45948 1.67942 1.10328 1.10005 1.21279 1.00835 0.93991 0.82732 1.20722 0.92557 0.89252 0.92075 0.95058 1.21941 1.00662 0.96052 0.98084 1.21358 0.98673 0.95422 0.99036 1.22194 0.97434 0.97902 1.00851 1.20752 1.01012 0.83465 0.89960 1.44065 1.24332 1.00785 1.62010 1.19153 1.07284 1.06060 1.05606 0.91268 1.25035 0.98795 0.99046 0.96059 1.69992 1.37271 1.26552 1.20448 0.86599 0.84998 0.78516 0.78172 1.21068 1.21618 1.20443 0.89839 0.89646 0.90234 0.87187 0.86929 0.74677 0.91613 0.92728 0.92114 0.93048 0.93734 0.92871 0.92858 0.93527 0.89829 0.96348 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 36.01 0.37 -0.40 16 2 C 0.04 0.61 7.32 -82.12 -0.60 0.00 16 3 N -0.35 -5.40 12.07 33.44 0.40 -5.00 16 4 O 0.11 1.61 11.20 17.09 0.19 1.80 16 5 C 0.01 0.16 8.12 29.82 0.24 0.40 16 6 Cl 0.05 0.77 29.23 -51.86 -1.52 -0.74 16 7 C -0.14 -2.10 4.82 -104.38 -0.50 -2.61 16 8 C -0.07 -1.02 6.10 -29.04 -0.18 -1.20 16 9 C 0.51 8.89 7.82 -10.98 -0.09 8.80 16 10 O -0.56 -11.38 16.03 5.56 0.09 -11.29 16 11 N -0.69 -12.14 3.86 -60.30 -0.23 -12.38 16 12 C 0.14 2.42 4.42 -4.04 -0.02 2.41 16 13 C 0.16 2.94 3.00 -67.60 -0.20 2.74 16 14 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 15 C -0.13 -2.06 5.37 -26.61 -0.14 -2.20 16 16 C -0.11 -1.69 5.88 -26.69 -0.16 -1.85 16 17 C -0.14 -2.59 6.08 -26.61 -0.16 -2.76 16 18 C 0.17 3.76 5.27 -3.69 -0.02 3.74 16 19 N -0.59 -12.79 2.98 -164.74 -0.49 -13.28 16 20 C -0.25 -5.96 7.01 -15.06 -0.11 -6.06 16 21 H 0.07 1.69 5.85 -52.49 -0.31 1.39 16 22 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 23 N -0.90 -23.37 11.24 55.49 0.62 -22.74 16 24 Si 0.89 20.12 29.58 -169.99 -5.03 15.09 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 33 H 0.42 7.50 7.44 -40.82 -0.30 7.20 16 34 H 0.07 1.32 7.39 -51.93 -0.38 0.93 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 2.06 6.20 -51.93 -0.32 1.74 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.25 6.56 8.31 -40.82 -0.34 6.23 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -28.09 373.26 -8.35 -36.44 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.37 Total: 5.29 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.65 Total: 1.18 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.30 Total: -53.40 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.28 Total: -9.49 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -1.52 Total: -0.74 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.09 -8.35 -36.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491226030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.769 kcal (2) G-P(sol) polarization free energy of solvation -28.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds