Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47363 * 2 1 4 4 N 1.31230 * 124.06184 * 89.96942 * 3 2 1 5 5 N 1.27339 * 120.04180 * 180.02562 * 4 3 2 6 6 S 1.56633 * 109.73879 * 0.02562 * 5 4 3 7 7 C 1.38249 * 124.05293 * 269.99652 * 3 2 1 8 8 C 1.47174 * 128.47410 * 359.97438 * 7 3 2 9 9 O 1.21623 * 119.99866 * 351.88468 * 8 7 3 10 10 N 1.34780 * 120.00349 * 171.88619 * 8 7 3 11 11 C 1.46508 * 119.99270 * 1.66311 * 10 8 7 12 12 C 1.46495 * 120.00472 * 181.65948 * 10 8 7 13 13 C 1.53005 * 109.46812 * 90.00322 * 12 10 8 14 14 N 1.46896 * 109.46936 * 180.02562 * 13 12 10 15 15 C 1.46904 * 110.99661 * 179.97438 * 14 13 12 16 16 C 1.50710 * 109.46660 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00210 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99703 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00160 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99869 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99995 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00238 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47196 * 59.99981 * 23 21 19 25 25 H 1.48500 * 109.47466 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47182 * 300.00355 * 23 21 19 27 27 H 1.09005 * 109.46557 * 60.00394 * 1 2 3 28 28 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47202 * 300.00914 * 1 2 3 30 30 H 1.08992 * 109.47428 * 239.99469 * 2 1 3 31 31 H 1.09004 * 109.46704 * 119.99079 * 2 1 3 32 32 H 1.09004 * 109.46852 * 83.68491 * 11 10 8 33 33 H 1.09005 * 109.46579 * 203.67777 * 11 10 8 34 34 H 1.08991 * 109.47312 * 323.67466 * 11 10 8 35 35 H 1.08994 * 109.47276 * 210.00190 * 12 10 8 36 36 H 1.08998 * 109.46802 * 330.00301 * 12 10 8 37 37 H 1.09007 * 109.46928 * 299.99766 * 13 12 10 38 38 H 1.08998 * 109.47453 * 59.99821 * 13 12 10 39 39 H 1.00902 * 111.00699 * 56.04777 * 14 13 12 40 40 H 1.08997 * 109.47332 * 299.99176 * 15 14 13 41 41 H 1.08997 * 109.47285 * 60.00407 * 15 14 13 42 42 H 0.97001 * 120.00028 * 359.97438 * 18 16 15 43 43 H 0.96997 * 120.00143 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2769 2.1140 1.0872 5 7 2.6999 3.3117 0.9979 6 16 2.8410 3.7119 -0.5099 7 6 2.2905 2.1506 -1.1454 8 6 2.1438 1.7338 -2.5492 9 8 1.8920 0.5742 -2.8161 10 7 2.2884 2.6370 -3.5391 11 6 2.6276 4.0260 -3.2194 12 6 2.1065 2.2300 -4.9346 13 6 0.6398 2.4106 -5.3314 14 7 0.4573 2.0018 -6.7305 15 6 -0.9424 2.1614 -7.1471 16 6 -1.0904 1.7338 -8.5847 17 8 -0.1249 1.3359 -9.2015 18 7 -2.2954 1.7947 -9.1851 19 6 -2.4300 1.4062 -10.4930 20 1 -1.5705 1.0511 -11.0420 21 6 -3.6725 1.4685 -11.1119 22 7 -4.7185 1.9001 -10.4437 23 14 -3.8558 0.9399 -12.8941 24 1 -3.4574 -0.4841 -13.0316 25 1 -5.2705 1.1015 -13.3155 26 1 -2.9848 1.7825 -13.7524 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 3.7065 4.1166 -3.0931 33 1 2.3011 4.6758 -4.0314 34 1 2.1277 4.3188 -2.2962 35 1 2.7353 2.8457 -5.5776 36 1 2.3871 1.1828 -5.0470 37 1 0.0110 1.7947 -4.6883 38 1 0.3592 3.4578 -5.2188 39 1 0.7711 1.0537 -6.8742 40 1 -1.5819 1.5439 -6.5164 41 1 -1.2342 3.2068 -7.0475 42 1 -3.0675 2.1133 -8.6919 43 1 -5.5859 1.9432 -10.8756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493619321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = 9.239037 kcal Electronic energy + Delta-G solvation = -26436.837432 eV Core-core repulsion = 22452.229330 eV Total energy + Delta-G solvation = -3984.608102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.41165 -40.19450 -38.31541 -36.65768 -35.19168 -34.74037 -33.84999 -31.41400 -31.17296 -29.82429 -28.13140 -27.31945 -25.97577 -24.53271 -23.90772 -22.75414 -21.74260 -19.80284 -19.23536 -19.04614 -17.90663 -17.67023 -16.75489 -16.60153 -16.21345 -15.59589 -15.36491 -15.27051 -14.67856 -14.54956 -14.49471 -14.05220 -13.85425 -13.83945 -13.57318 -13.38484 -13.28159 -12.91794 -12.82678 -12.48976 -12.34220 -12.15144 -11.79650 -11.58826 -11.51947 -11.32082 -11.22165 -11.00563 -10.56280 -10.45101 -10.34297 -10.22648 -10.18140 -10.13652 -9.51325 -9.23696 -8.50276 -8.13846 -7.97768 -6.42776 -3.83776 -0.69432 0.34534 1.06458 1.53791 2.30374 2.52243 3.19511 3.25316 3.29707 3.45227 3.86167 3.89196 4.09585 4.15229 4.32415 4.41661 4.72389 4.73312 4.83102 4.94432 4.97897 5.04024 5.06326 5.13267 5.24731 5.36745 5.42068 5.60026 5.63179 5.70753 5.77174 5.78386 5.92022 5.93884 5.98876 6.23893 6.71467 7.09899 7.27318 7.51926 7.54014 7.58562 8.04579 8.59658 9.16406 9.52619 10.03868 10.74851 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.001846 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.586922 B =15162.731418 C =15679.288816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C 0.106 3.894 4 N -0.249 5.249 5 N -0.275 5.275 6 S 0.429 5.571 7 C -0.296 4.296 8 C 0.600 3.400 9 O -0.507 6.507 10 N -0.604 5.604 11 C 0.063 3.937 12 C 0.119 3.881 13 C 0.044 3.956 14 N -0.666 5.666 15 C 0.052 3.948 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.932 3.068 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.352 0.648 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.210 4.918 22.294 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 C -0.041 4.041 4 N -0.114 5.114 5 N -0.255 5.255 6 S 0.568 5.432 7 C -0.437 4.437 8 C 0.385 3.615 9 O -0.382 6.382 10 N -0.337 5.337 11 C -0.082 4.082 12 C -0.003 4.003 13 C -0.087 4.087 14 N -0.299 5.299 15 C -0.080 4.080 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.171 0.829 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.272 6.207 22.581 27.425 hybrid contribution -1.579 -1.661 -0.579 2.364 sum 12.692 4.545 22.002 25.804 Atomic orbital electron populations 1.21675 0.93217 1.02956 1.02162 1.20359 0.96997 0.86419 1.05297 1.23005 0.96179 0.99655 0.85274 1.70749 1.13634 0.98998 1.28031 1.78688 1.17636 1.10396 1.18742 1.82900 1.47066 1.13925 0.99341 1.27711 1.15659 1.00381 0.99915 1.16521 0.77575 0.85404 0.81996 1.90841 1.47681 1.17179 1.82528 1.47628 1.69456 1.09610 1.07052 1.22180 1.01487 0.82454 1.02110 1.21556 0.97160 1.03073 0.78521 1.22272 0.95662 1.01132 0.89613 1.60022 1.20209 1.31735 1.17907 1.21660 0.88879 1.01745 0.95755 1.19770 0.84254 0.85223 0.88164 1.90520 1.38484 1.51689 1.66040 1.41855 1.08264 1.57385 1.12457 1.19656 0.95796 1.40211 0.87290 0.87934 1.25270 0.94948 0.97366 1.00377 1.69602 1.00261 1.46711 1.37745 0.85906 0.77067 0.79294 0.81883 1.19890 1.20990 1.19871 0.92332 0.91021 0.92480 0.87333 0.89342 0.90873 0.88098 0.91820 0.88524 0.89020 0.94979 0.90955 0.82863 0.93758 0.89599 0.77452 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.05 -0.44 6.04 -27.88 -0.17 -0.61 16 3 C 0.11 1.06 6.25 -82.84 -0.52 0.54 16 4 N -0.25 -2.73 11.54 33.42 0.39 -2.34 16 5 N -0.28 -2.77 12.51 60.35 0.75 -2.02 16 6 S 0.43 2.89 19.06 -107.50 -2.05 0.85 16 7 C -0.30 -2.72 6.49 -35.95 -0.23 -2.95 16 8 C 0.60 6.19 7.66 -12.63 -0.10 6.09 16 9 O -0.51 -6.65 14.44 5.26 0.08 -6.57 16 10 N -0.60 -5.01 2.87 -182.94 -0.53 -5.54 16 11 C 0.06 0.30 9.08 59.85 0.54 0.84 16 12 C 0.12 1.14 5.65 -4.04 -0.02 1.11 16 13 C 0.04 0.51 6.01 -3.82 -0.02 0.48 16 14 N -0.67 -10.23 6.13 -115.05 -0.70 -10.94 16 15 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 16 C 0.44 10.29 7.82 -10.98 -0.09 10.21 16 17 O -0.58 -15.66 15.78 5.56 0.09 -15.57 16 18 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 23 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.11 1.04 6.34 -51.93 -0.33 0.71 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.22 8.00 -51.93 -0.42 -0.19 16 33 H 0.10 0.35 8.02 -51.93 -0.42 -0.07 16 34 H 0.06 0.27 4.58 -25.35 -0.12 0.15 16 35 H 0.10 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.09 1.00 7.40 -51.93 -0.38 0.61 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.35 5.69 8.43 -39.29 -0.33 5.36 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -33.82 377.11 -6.78 -40.60 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.63 Total: 10.07 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.51 Total: 7.80 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.58 Total: -58.79 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.16 Total: -22.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.05 Total: 0.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.82 -6.78 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493619321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.839 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds