Wall clock time and date at job start Sat Apr 11 2020 06:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38127 * 126.29891 * 2 1 4 4 C 1.47286 * 126.42258 * 0.02562 * 3 2 1 5 5 O 1.21521 * 120.00472 * 359.97438 * 4 3 2 6 6 O 1.34761 * 119.99631 * 180.02562 * 4 3 2 7 7 C 1.45199 * 116.99828 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47090 * 179.97438 * 7 6 4 9 9 N 1.30108 * 124.95610 * 180.23342 * 8 7 6 10 10 C 1.35672 * 109.49597 * 180.17988 * 9 8 7 11 11 C 1.39835 * 133.87979 * 179.91713 * 10 9 8 12 12 C 1.38166 * 118.16127 * 179.68254 * 11 10 9 13 13 C 1.38621 * 119.55492 * 359.97438 * 12 11 10 14 14 N 1.31690 * 121.35671 * 359.97438 * 13 12 11 15 15 C 1.32349 * 121.57708 * 0.04580 * 14 13 12 16 16 N 1.36112 * 124.95497 * 359.97438 * 8 7 6 17 17 H 0.96998 * 126.27883 * 359.97438 * 16 8 7 18 18 C 1.41334 * 107.14626 * 180.28174 * 3 2 1 19 19 N 1.30437 * 108.01464 * 359.55534 * 18 3 2 20 20 N 1.34227 * 126.29269 * 180.02562 * 2 1 3 21 21 C 1.46498 * 125.74667 * 359.95070 * 20 2 1 22 22 C 1.50696 * 109.47558 * 89.99358 * 21 20 2 23 23 H 1.08001 * 119.99517 * 359.97438 * 22 21 20 24 24 C 1.37877 * 120.00113 * 180.02562 * 22 21 20 25 25 N 1.31512 * 119.99837 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99818 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47286 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47262 * 119.99964 * 26 24 22 29 29 H 1.48506 * 109.47162 * 239.99920 * 26 24 22 30 30 H 1.09002 * 109.47014 * 89.97248 * 1 2 3 31 31 H 1.09000 * 109.47540 * 209.97891 * 1 2 3 32 32 H 1.08998 * 109.47165 * 329.97339 * 1 2 3 33 33 H 1.09006 * 109.46893 * 59.99885 * 7 6 4 34 34 H 1.08999 * 109.47416 * 299.99863 * 7 6 4 35 35 H 1.08003 * 120.91758 * 359.70102 * 11 10 9 36 36 H 1.07995 * 120.22260 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.31984 * 179.97438 * 13 12 11 38 38 H 1.08000 * 125.99530 * 179.73840 * 18 3 2 39 39 H 1.08999 * 109.46862 * 209.99953 * 21 20 2 40 40 H 1.09006 * 109.46695 * 329.99178 * 21 20 2 41 41 H 0.96996 * 119.99799 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5196 0.0005 5 8 0.7019 2.7873 0.0006 6 8 2.8016 3.5096 -0.0001 7 6 2.2984 4.8716 -0.0001 8 6 3.4570 5.8352 -0.0001 9 7 3.3484 7.1317 0.0042 10 6 4.5850 7.6898 -0.0013 11 6 5.0539 9.0071 -0.0017 12 6 6.4201 9.2130 -0.0018 13 6 7.2759 8.1225 -0.0008 14 7 6.8143 6.8892 0.0006 15 6 5.5154 6.6353 0.0002 16 7 4.7699 5.4761 0.0003 17 1 5.1173 4.5704 0.0011 18 6 3.6598 0.6495 -0.0066 19 7 3.6339 -0.6546 -0.0007 20 7 2.3015 -1.0819 -0.0005 21 6 1.8497 -2.4755 -0.0001 22 6 1.6937 -2.9534 -1.4207 23 1 1.9090 -2.2857 -2.2418 24 6 1.2750 -4.2428 -1.6722 25 7 1.0113 -5.0553 -0.6723 26 14 1.0822 -4.8354 -3.4332 27 1 1.4381 -3.7369 -4.3670 28 1 1.9805 -5.9946 -3.6665 29 1 -0.3259 -5.2457 -3.6661 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3634 -0.8901 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 1.6908 5.0345 0.8902 34 1 1.6901 5.0343 -0.8898 35 1 4.3671 9.8406 -0.0017 36 1 6.8186 10.2168 -0.0016 37 1 8.3432 8.2878 -0.0013 38 1 4.5460 1.2667 -0.0123 39 1 2.5847 -3.0955 0.5133 40 1 0.8915 -2.5466 0.5146 41 1 0.7171 -5.9625 -0.8492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536661802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:12 Heat of formation + Delta-G solvation = 69.608885 kcal Electronic energy + Delta-G solvation = -27504.253861 eV Core-core repulsion = 23386.819640 eV Total energy + Delta-G solvation = -4117.434220 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.71334 -41.06143 -39.90043 -38.67820 -36.40746 -34.02634 -33.97410 -32.27521 -31.58565 -31.50732 -31.01906 -28.39882 -27.31163 -26.80305 -23.85811 -23.49056 -23.21126 -22.42840 -21.33088 -20.53609 -19.16760 -18.65770 -18.01985 -17.41723 -16.92054 -16.78709 -16.59938 -16.20363 -15.83121 -15.37874 -14.91851 -14.68862 -14.51785 -14.05169 -13.67818 -13.57867 -13.42698 -13.06276 -12.93599 -12.72569 -12.58772 -12.51794 -12.25106 -11.95593 -11.64715 -11.53176 -11.31319 -11.19898 -10.99530 -10.97835 -10.59647 -10.41136 -10.02578 -10.00275 -9.56736 -9.22651 -8.79482 -8.78421 -8.77308 -8.22623 -6.42047 -4.50406 0.41364 0.92115 1.72241 2.12357 2.28220 2.32396 2.57087 3.11822 3.16279 3.20646 3.28290 3.47118 3.48089 3.72491 4.05280 4.17441 4.33651 4.56507 4.61132 4.81167 4.83853 4.89128 4.93535 5.01055 5.11810 5.19421 5.28330 5.47309 5.54878 5.69106 5.77228 5.81817 5.94223 6.13086 6.23328 6.27591 6.47069 6.63894 6.75565 6.78883 6.99789 7.30453 7.42693 7.53750 7.60950 7.66914 7.90213 8.20138 8.54849 9.17199 10.66261 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023323 B = 0.001960 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.219424 B =14283.836567 C =14790.312452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.177 3.823 3 C -0.321 4.321 4 C 0.560 3.440 5 O -0.519 6.519 6 O -0.365 6.365 7 C 0.149 3.851 8 C 0.309 3.691 9 N -0.479 5.479 10 C 0.005 3.995 11 C -0.019 4.019 12 C -0.184 4.184 13 C 0.137 3.863 14 N -0.481 5.481 15 C 0.241 3.759 16 N -0.570 5.570 17 H 0.436 0.564 18 C 0.080 3.920 19 N -0.294 5.294 20 N -0.308 5.308 21 C 0.249 3.751 22 C -0.542 4.542 23 H 0.067 0.933 24 C 0.068 3.932 25 N -0.888 5.888 26 Si 0.909 3.091 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.183 0.817 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.353 24.129 2.783 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.038 3.962 3 C -0.334 4.334 4 C 0.408 3.592 5 O -0.409 6.409 6 O -0.283 6.283 7 C 0.073 3.927 8 C 0.041 3.959 9 N -0.202 5.202 10 C -0.116 4.116 11 C -0.047 4.047 12 C -0.207 4.207 13 C -0.030 4.030 14 N -0.194 5.194 15 C 0.004 3.996 16 N -0.184 5.184 17 H 0.278 0.722 18 C -0.108 4.108 19 N -0.113 5.113 20 N -0.084 5.084 21 C 0.132 3.868 22 C -0.581 4.581 23 H 0.085 0.915 24 C -0.136 4.136 25 N -0.525 5.525 26 Si 0.736 3.264 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.200 0.800 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.393 22.489 2.851 23.553 hybrid contribution -0.154 0.139 -0.949 0.972 sum 6.239 22.628 1.902 23.549 Atomic orbital electron populations 1.20650 0.86381 1.04184 1.04340 1.21472 0.95054 0.86353 0.93278 1.18715 0.93855 0.88771 1.32057 1.19956 0.83090 0.84359 0.71837 1.90805 1.17581 1.84111 1.48360 1.86385 1.40956 1.14889 1.86032 1.21071 0.89520 0.75986 1.06165 1.23055 0.83383 0.91649 0.97797 1.70288 1.23450 1.03831 1.22590 1.19669 0.89664 0.94836 1.07395 1.20749 0.95470 0.93774 0.94664 1.21914 0.93179 1.00999 1.04607 1.22624 1.00391 0.85620 0.94381 1.66413 1.12330 1.24974 1.15664 1.18973 0.90408 0.86899 1.03293 1.42652 1.05693 1.08745 1.61301 0.72233 1.23887 0.96465 0.92240 0.98176 1.77244 0.98306 1.12262 1.23473 1.49469 1.02570 1.08396 1.47932 1.19954 0.96608 0.70489 0.99711 1.21259 1.47696 0.98267 0.90840 0.91524 1.24925 0.94333 0.95958 0.98404 1.69914 1.44267 1.07220 1.31111 0.86254 0.78020 0.78902 0.83274 1.19502 1.20503 1.20497 0.89332 0.90313 0.88773 0.87079 0.87054 0.83952 0.83711 0.81610 0.79963 0.92213 0.92322 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 9.57 36.00 0.34 -1.23 16 2 C 0.18 3.32 7.01 -81.59 -0.57 2.75 16 3 C -0.32 -5.44 6.13 -105.08 -0.64 -6.09 16 4 C 0.56 8.36 7.95 34.41 0.27 8.63 16 5 O -0.52 -8.38 14.63 -19.28 -0.28 -8.66 16 6 O -0.37 -4.35 9.51 -40.66 -0.39 -4.74 16 7 C 0.15 1.51 6.10 36.01 0.22 1.73 16 8 C 0.31 3.44 7.91 -154.76 -1.22 2.21 16 9 N -0.48 -5.91 11.28 -8.19 -0.09 -6.00 16 10 C 0.01 0.06 7.24 -84.67 -0.61 -0.55 16 11 C -0.02 -0.16 10.22 -39.01 -0.40 -0.56 16 12 C -0.18 -1.18 10.09 -39.47 -0.40 -1.58 16 13 C 0.14 1.05 11.16 -17.47 -0.19 0.86 16 14 N -0.48 -5.34 10.38 -12.27 -0.13 -5.47 16 15 C 0.24 2.86 8.46 -155.63 -1.32 1.55 16 16 N -0.57 -6.18 6.04 -9.47 -0.06 -6.23 16 17 H 0.44 4.03 8.54 -40.82 -0.35 3.68 16 18 C 0.08 1.33 11.87 -16.97 -0.20 1.13 16 19 N -0.29 -6.02 12.50 30.87 0.39 -5.64 16 20 N -0.31 -6.56 3.56 -57.76 -0.21 -6.77 16 21 C 0.25 5.90 5.96 -5.20 -0.03 5.87 16 22 C -0.54 -14.05 9.39 -34.44 -0.32 -14.37 16 23 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 24 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -23.82 13.29 55.43 0.74 -23.09 16 26 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.24 7.05 -51.93 -0.37 0.88 16 32 H 0.09 1.41 6.50 -51.93 -0.34 1.07 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 37 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.18 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.06 1.37 7.02 -51.93 -0.36 1.00 16 41 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -31.54 366.57 -9.05 -40.59 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.34 Total: 3.24 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -5.18 Total: 2.00 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.64 Total: -53.19 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.67 Total: -13.40 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.54 -9.05 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536661802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.199 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds