Wall clock time and date at job start Sat Apr 11 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38127 * 126.29891 * 2 1 4 4 C 1.47286 * 126.42258 * 0.02562 * 3 2 1 5 5 O 1.21521 * 120.00472 * 359.97438 * 4 3 2 6 6 O 1.34761 * 119.99631 * 180.02562 * 4 3 2 7 7 C 1.45199 * 116.99828 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.47090 * 179.97438 * 7 6 4 9 9 N 1.30108 * 124.95610 * 180.23342 * 8 7 6 10 10 C 1.35672 * 109.49597 * 180.17988 * 9 8 7 11 11 C 1.39835 * 133.87979 * 179.91713 * 10 9 8 12 12 C 1.38166 * 118.16127 * 179.68254 * 11 10 9 13 13 C 1.38621 * 119.55492 * 359.97438 * 12 11 10 14 14 N 1.31690 * 121.35671 * 359.97438 * 13 12 11 15 15 C 1.32349 * 121.57708 * 0.04580 * 14 13 12 16 16 N 1.36112 * 124.95497 * 359.97438 * 8 7 6 17 17 H 0.96998 * 126.27883 * 359.97438 * 16 8 7 18 18 C 1.41334 * 107.14626 * 180.28174 * 3 2 1 19 19 N 1.30437 * 108.01464 * 359.55534 * 18 3 2 20 20 N 1.34227 * 126.29269 * 180.02562 * 2 1 3 21 21 C 1.46498 * 125.74667 * 359.95070 * 20 2 1 22 22 C 1.50696 * 109.47558 * 89.99358 * 21 20 2 23 23 H 1.08001 * 119.99517 * 359.97438 * 22 21 20 24 24 C 1.37877 * 120.00113 * 180.02562 * 22 21 20 25 25 N 1.31512 * 119.99837 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99818 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.47286 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47262 * 119.99964 * 26 24 22 29 29 H 1.48506 * 109.47162 * 239.99920 * 26 24 22 30 30 H 1.09002 * 109.47014 * 89.97248 * 1 2 3 31 31 H 1.09000 * 109.47540 * 209.97891 * 1 2 3 32 32 H 1.08998 * 109.47165 * 329.97339 * 1 2 3 33 33 H 1.09006 * 109.46893 * 59.99885 * 7 6 4 34 34 H 1.08999 * 109.47416 * 299.99863 * 7 6 4 35 35 H 1.08003 * 120.91758 * 359.70102 * 11 10 9 36 36 H 1.07995 * 120.22260 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.31984 * 179.97438 * 13 12 11 38 38 H 1.08000 * 125.99530 * 179.73840 * 18 3 2 39 39 H 1.08999 * 109.46862 * 209.99953 * 21 20 2 40 40 H 1.09006 * 109.46695 * 329.99178 * 21 20 2 41 41 H 0.96996 * 119.99799 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8872 2.5196 0.0005 5 8 0.7019 2.7873 0.0006 6 8 2.8016 3.5096 -0.0001 7 6 2.2984 4.8716 -0.0001 8 6 3.4570 5.8352 -0.0001 9 7 3.3484 7.1317 0.0042 10 6 4.5850 7.6898 -0.0013 11 6 5.0539 9.0071 -0.0017 12 6 6.4201 9.2130 -0.0018 13 6 7.2759 8.1225 -0.0008 14 7 6.8143 6.8892 0.0006 15 6 5.5154 6.6353 0.0002 16 7 4.7699 5.4761 0.0003 17 1 5.1173 4.5704 0.0011 18 6 3.6598 0.6495 -0.0066 19 7 3.6339 -0.6546 -0.0007 20 7 2.3015 -1.0819 -0.0005 21 6 1.8497 -2.4755 -0.0001 22 6 1.6937 -2.9534 -1.4207 23 1 1.9090 -2.2857 -2.2418 24 6 1.2750 -4.2428 -1.6722 25 7 1.0113 -5.0553 -0.6723 26 14 1.0822 -4.8354 -3.4332 27 1 1.4381 -3.7369 -4.3670 28 1 1.9805 -5.9946 -3.6665 29 1 -0.3259 -5.2457 -3.6661 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3634 -0.8901 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 1.6908 5.0345 0.8902 34 1 1.6901 5.0343 -0.8898 35 1 4.3671 9.8406 -0.0017 36 1 6.8186 10.2168 -0.0016 37 1 8.3432 8.2878 -0.0013 38 1 4.5460 1.2667 -0.0123 39 1 2.5847 -3.0955 0.5133 40 1 0.8915 -2.5466 0.5146 41 1 0.7171 -5.9625 -0.8492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536661802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:11 Heat of formation + Delta-G solvation = 51.045988 kcal Electronic energy + Delta-G solvation = -27505.058808 eV Core-core repulsion = 23386.819640 eV Total energy + Delta-G solvation = -4118.239168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.46064 -42.46527 -41.06382 -39.38269 -37.52481 -35.84922 -34.70256 -33.93087 -32.94148 -32.24642 -31.92495 -29.64084 -28.68242 -28.09604 -25.52566 -24.26272 -24.18344 -23.51861 -22.14850 -21.85883 -20.57094 -19.46276 -19.00355 -18.82566 -18.51267 -17.78205 -17.41580 -17.16721 -16.81381 -16.74974 -16.32483 -15.99664 -15.65640 -15.17387 -14.80725 -14.71412 -14.29895 -14.27349 -14.17909 -13.73763 -13.65760 -13.61070 -13.47921 -13.47350 -13.15472 -13.00667 -12.72501 -12.35126 -12.26701 -12.09488 -11.96874 -11.89315 -11.85620 -11.37529 -10.77396 -10.35360 -10.27448 -9.90538 -9.70121 -9.51949 -8.39682 -6.55473 -0.26066 0.27298 0.38433 1.10302 1.17820 1.35918 1.38727 1.46089 1.49932 1.54665 1.72483 2.18470 2.31489 2.80958 2.90166 2.94071 3.33485 3.63557 3.64831 3.76398 3.85420 3.90596 4.07117 4.10652 4.12923 4.23494 4.29002 4.48102 4.60291 4.68534 4.74933 4.80226 4.87528 4.95846 5.09866 5.12012 5.20776 5.24795 5.47806 5.57351 5.64454 5.72483 5.94288 6.03682 6.51892 6.52921 6.67349 6.79139 6.87090 7.15845 8.68570 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.023323 B = 0.001960 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.219424 B =14283.836567 C =14790.312452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.164 3.836 3 C -0.320 4.320 4 C 0.571 3.429 5 O -0.529 6.529 6 O -0.354 6.354 7 C 0.153 3.847 8 C 0.302 3.698 9 N -0.498 5.498 10 C -0.024 4.024 11 C -0.029 4.029 12 C -0.167 4.167 13 C 0.137 3.863 14 N -0.511 5.511 15 C 0.216 3.784 16 N -0.569 5.569 17 H 0.440 0.560 18 C 0.097 3.903 19 N -0.336 5.336 20 N -0.333 5.333 21 C 0.265 3.735 22 C -0.555 4.555 23 H 0.053 0.947 24 C 0.025 3.975 25 N -0.915 5.915 26 Si 0.970 3.030 27 H -0.273 1.273 28 H -0.275 1.275 29 H -0.269 1.269 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.161 0.839 36 H 0.187 0.813 37 H 0.202 0.798 38 H 0.224 0.776 39 H 0.034 0.966 40 H 0.057 0.943 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.203 26.729 2.151 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.027 3.973 3 C -0.334 4.334 4 C 0.418 3.582 5 O -0.420 6.420 6 O -0.271 6.271 7 C 0.077 3.923 8 C 0.033 3.967 9 N -0.221 5.221 10 C -0.145 4.145 11 C -0.056 4.056 12 C -0.189 4.189 13 C -0.030 4.030 14 N -0.225 5.225 15 C -0.019 4.019 16 N -0.184 5.184 17 H 0.282 0.718 18 C -0.090 4.090 19 N -0.155 5.155 20 N -0.109 5.109 21 C 0.146 3.854 22 C -0.593 4.593 23 H 0.071 0.929 24 C -0.177 4.177 25 N -0.553 5.553 26 Si 0.795 3.205 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.194 1.194 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.179 0.821 36 H 0.205 0.795 37 H 0.218 0.782 38 H 0.241 0.759 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.248 25.114 2.228 26.234 hybrid contribution -0.271 -0.410 -0.713 0.867 sum 6.977 24.703 1.514 25.714 Atomic orbital electron populations 1.20689 0.84998 1.04755 1.04613 1.21981 0.96153 0.86270 0.92883 1.18920 0.93753 0.89633 1.31061 1.19520 0.83024 0.84129 0.71533 1.90804 1.18125 1.84325 1.48733 1.86337 1.39960 1.15403 1.85386 1.21212 0.89399 0.74457 1.07187 1.23063 0.83595 0.91615 0.98398 1.70221 1.24262 1.04392 1.23247 1.20125 0.89381 0.96203 1.08753 1.21181 0.96932 0.93156 0.94372 1.22380 0.92051 1.02616 1.01834 1.23400 1.02338 0.84990 0.92271 1.66480 1.12018 1.26874 1.17134 1.19238 0.91004 0.87214 1.04446 1.42644 1.05608 1.08919 1.61246 0.71818 1.24557 0.97791 0.91293 0.95380 1.77194 0.98259 1.14277 1.25745 1.49182 1.03389 1.07944 1.50346 1.19471 0.95645 0.71931 0.98307 1.21405 1.47883 0.98505 0.91517 0.92864 1.25696 0.93870 0.95986 1.02112 1.69990 1.44779 1.07635 1.32900 0.85314 0.78415 0.78172 0.78644 1.19704 1.20077 1.19358 0.89100 0.90461 0.87384 0.85982 0.86171 0.82096 0.79530 0.78183 0.75921 0.94813 0.92518 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.99 9.57 71.24 0.68 -2.31 16 2 C 0.16 6.17 7.01 42.17 0.30 6.46 16 3 C -0.32 -10.59 6.13 -20.16 -0.12 -10.72 16 4 C 0.57 16.16 7.95 70.20 0.56 16.72 16 5 O -0.53 -16.26 14.63 19.77 0.29 -15.97 16 6 O -0.35 -7.87 9.51 -56.72 -0.54 -8.41 16 7 C 0.15 2.91 6.10 71.24 0.43 3.34 16 8 C 0.30 6.52 7.91 137.90 1.09 7.61 16 9 N -0.50 -12.05 11.28 -179.82 -2.03 -14.08 16 10 C -0.02 -0.54 7.24 39.52 0.29 -0.26 16 11 C -0.03 -0.43 10.22 22.64 0.23 -0.20 16 12 C -0.17 -1.58 10.09 22.34 0.23 -1.35 16 13 C 0.14 1.72 11.16 84.81 0.95 2.67 16 14 N -0.51 -10.71 10.38 -192.73 -2.00 -12.71 16 15 C 0.22 5.02 8.46 133.84 1.13 6.15 16 16 N -0.57 -12.10 6.04 -183.87 -1.11 -13.21 16 17 H 0.44 7.91 8.54 -92.71 -0.79 7.12 16 18 C 0.10 3.14 11.87 85.66 1.02 4.15 16 19 N -0.34 -13.91 12.50 -56.25 -0.70 -14.61 16 20 N -0.33 -14.52 3.56 -336.66 -1.20 -15.72 16 21 C 0.26 13.03 5.96 85.63 0.51 13.54 16 22 C -0.56 -29.46 9.39 25.60 0.24 -29.22 16 23 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 24 C 0.03 1.31 5.46 84.66 0.46 1.77 16 25 N -0.92 -49.78 13.29 21.45 0.28 -49.50 16 26 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 28 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 29 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.08 2.48 7.05 -2.39 -0.02 2.46 16 32 H 0.11 3.14 6.50 -2.39 -0.02 3.13 16 33 H 0.12 2.08 8.14 -2.38 -0.02 2.07 16 34 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.19 0.14 8.06 -2.91 -0.02 0.12 16 37 H 0.20 0.92 8.06 -2.91 -0.02 0.89 16 38 H 0.22 5.02 8.06 -2.91 -0.02 5.00 16 39 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 2.76 7.02 -2.38 -0.02 2.74 16 41 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -69.67 366.57 3.32 -66.34 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.32 Total: 15.84 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 7.99 Total: 18.37 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -6.76 Total: -119.82 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.25 Total: -24.38 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -69.67 3.32 -66.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536661802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.389 kcal (2) G-P(sol) polarization free energy of solvation -69.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds