Wall clock time and date at job start Sat Apr 11 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 119.99532 * 2 1 4 4 H 1.48507 * 109.47409 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47128 * 30.00160 * 3 2 1 6 6 H 1.48501 * 109.47158 * 149.99891 * 3 2 1 7 7 C 1.38795 * 120.00562 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00474 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00171 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47207 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00173 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99736 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00133 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47573 * 179.97438 * 14 13 11 16 16 H 1.08997 * 112.84491 * 43.80874 * 15 14 13 17 17 C 1.53785 * 113.61647 * 174.99698 * 15 14 13 18 18 C 1.53778 * 87.07898 * 139.98425 * 17 15 14 19 19 H 1.08998 * 113.61074 * 89.20158 * 18 17 15 20 20 N 1.46903 * 113.61544 * 220.02232 * 18 17 15 21 21 C 1.46903 * 110.99911 * 205.00384 * 20 18 17 22 22 C 1.50698 * 109.47055 * 180.02562 * 21 20 18 23 23 N 1.30894 * 125.90848 * 274.97312 * 22 21 20 24 24 C 1.33540 * 109.77920 * 179.97438 * 23 22 21 25 25 O 1.35867 * 125.58762 * 179.97438 * 24 23 22 26 26 N 1.31069 * 108.82481 * 0.02562 * 24 23 22 27 27 N 1.34351 * 125.91642 * 94.97332 * 22 21 20 28 28 H 0.96997 * 126.77259 * 0.02562 * 27 22 21 29 29 C 1.53771 * 113.61753 * 272.49773 * 15 14 13 30 30 H 0.97001 * 120.00285 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.47074 * 59.99827 * 10 9 7 32 32 H 1.08997 * 109.47111 * 299.99898 * 10 9 7 33 33 H 0.97007 * 120.00438 * 0.02562 * 13 11 10 34 34 H 1.09005 * 109.46850 * 60.00005 * 14 13 11 35 35 H 1.09001 * 109.47461 * 300.00201 * 14 13 11 36 36 H 1.09008 * 113.60955 * 25.43825 * 17 15 14 37 37 H 1.08995 * 113.61737 * 254.53962 * 17 15 14 38 38 H 1.00891 * 111.00113 * 81.04796 * 20 18 17 39 39 H 1.09004 * 109.47152 * 59.99829 * 21 20 18 40 40 H 1.08997 * 109.47083 * 300.00003 * 21 20 18 41 41 H 0.96699 * 113.99971 * 90.00034 * 25 24 23 42 42 H 1.09005 * 113.61121 * 105.46601 * 29 15 14 43 43 H 1.09003 * 113.61903 * 334.57072 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4404 0.7001 7 6 2.0104 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0019 10 6 2.5161 -3.8913 -0.0013 11 6 1.9876 -5.3027 -0.0018 12 8 0.7914 -5.5023 -0.0028 13 7 2.8445 -6.3430 -0.0020 14 6 2.3309 -7.7150 -0.0029 15 6 3.5029 -8.6984 -0.0036 16 1 4.2931 -8.4156 0.6919 17 6 3.0727 -10.1698 0.1182 18 6 4.1665 -10.4932 -0.9131 19 1 5.1388 -10.7028 -0.4671 20 7 3.7632 -11.5017 -1.9022 21 6 4.9345 -12.1948 -2.4550 22 6 4.4823 -13.2188 -3.4639 23 7 4.0972 -14.4411 -3.1973 24 6 3.7659 -15.0675 -4.3292 25 8 3.3233 -16.3486 -4.4235 26 7 3.9388 -14.2443 -5.3344 27 7 4.4048 -13.0354 -4.7925 28 1 4.6270 -12.2274 -5.2811 29 6 4.0143 -9.0463 -1.4114 30 1 -0.4850 0.8400 -0.0004 31 1 3.1240 -3.7316 0.8892 32 1 3.1253 -3.7309 -0.8908 33 1 3.8013 -6.1833 -0.0015 34 1 1.7226 -7.8746 -0.8933 35 1 1.7219 -7.8756 0.8867 36 1 2.0620 -10.3604 -0.2429 37 1 3.2596 -10.5993 1.1024 38 1 3.2087 -11.0870 -2.6360 39 1 5.4761 -12.6917 -1.6500 40 1 5.5891 -11.4712 -2.9407 41 1 2.3624 -16.4382 -4.3628 42 1 4.9617 -8.5689 -1.6622 43 1 3.2612 -8.9298 -2.1908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565837249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:18 Heat of formation + Delta-G solvation = 1.001423 kcal Electronic energy + Delta-G solvation = -25134.995657 eV Core-core repulsion = 21150.030346 eV Total energy + Delta-G solvation = -3984.965312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.30584 -40.88461 -39.95591 -38.53760 -36.31759 -34.94964 -34.57465 -33.40467 -32.03191 -31.15358 -28.41921 -27.62621 -26.55412 -26.46565 -23.63671 -22.64352 -22.20034 -21.82762 -20.49866 -19.76747 -19.60837 -18.68866 -17.77791 -17.46957 -17.14306 -16.87691 -16.86795 -16.67272 -16.21472 -15.79755 -15.62540 -15.25940 -14.96860 -14.66898 -14.55047 -14.43454 -14.08984 -13.48421 -13.31286 -13.27306 -13.15888 -13.13131 -12.88886 -12.77569 -12.66296 -12.57863 -11.87087 -11.73913 -11.46923 -11.28020 -11.21036 -11.13591 -11.05229 -10.87601 -10.71060 -10.26190 -10.05700 -9.35078 -8.66128 -8.33943 -6.12205 0.31801 1.28479 1.33466 1.43195 1.48620 1.54361 1.58847 1.64326 2.27430 2.34013 2.38229 3.00356 3.20867 3.33544 3.43173 3.62160 3.67424 3.77455 3.98613 4.02051 4.08972 4.31704 4.34773 4.41104 4.51404 4.52675 4.60954 4.77456 4.90020 4.91024 4.94210 4.96881 5.00012 5.19920 5.27851 5.41075 5.42544 5.55054 5.96957 6.08515 6.20467 6.32022 6.47939 6.56206 6.87649 7.07427 7.29346 8.75259 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.026976 B = 0.001393 C = 0.001377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.692919 B =20099.166634 C =20333.676898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.129 4.129 11 C 0.530 3.470 12 O -0.571 6.571 13 N -0.709 5.709 14 C 0.131 3.869 15 C -0.114 4.114 16 H 0.116 0.884 17 C -0.120 4.120 18 C 0.082 3.918 19 H 0.123 0.877 20 N -0.682 5.682 21 C 0.140 3.860 22 C 0.313 3.687 23 N -0.562 5.562 24 C 0.391 3.609 25 O -0.452 6.452 26 N -0.336 5.336 27 N -0.453 5.453 28 H 0.461 0.539 29 C -0.157 4.157 30 H 0.271 0.729 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.417 0.583 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.348 0.652 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.428 0.572 42 H 0.086 0.914 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.520 -26.639 -5.660 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.280 4.280 11 C 0.316 3.684 12 O -0.449 6.449 13 N -0.363 5.363 14 C 0.008 3.992 15 C -0.133 4.133 16 H 0.134 0.866 17 C -0.159 4.159 18 C -0.028 4.028 19 H 0.141 0.859 20 N -0.314 5.314 21 C 0.009 3.991 22 C 0.034 3.966 23 N -0.301 5.301 24 C 0.071 3.929 25 O -0.255 6.255 26 N -0.179 5.179 27 N -0.177 5.177 28 H 0.311 0.689 29 C -0.196 4.196 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.167 0.833 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.289 0.711 42 H 0.105 0.895 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.623 -28.123 -5.658 32.198 hybrid contribution 1.371 2.414 -0.820 2.895 sum 15.994 -25.709 -6.478 30.963 Atomic orbital electron populations 1.70188 1.08018 1.28591 1.48045 1.26126 0.95936 1.03329 0.93727 0.84953 0.78223 0.76009 0.78785 1.19311 1.20407 1.18103 1.23210 0.95374 0.91973 1.58838 0.89809 1.85614 1.10828 0.99379 1.97058 1.23373 1.03414 0.94398 1.06822 1.20102 0.86272 0.86839 0.75199 1.90694 1.17654 1.86189 1.50395 1.45745 1.10215 1.05102 1.75192 1.21400 0.96999 0.79777 1.01054 1.22622 0.97124 0.94085 0.99457 0.86591 1.23060 0.99670 0.93087 1.00124 1.23002 0.99304 0.87574 0.92912 0.85884 1.60263 1.20049 1.32139 1.18948 1.20675 0.92654 0.91636 0.94178 1.24549 0.94086 0.92934 0.85057 1.70298 1.23454 1.06517 1.29824 1.21431 0.98361 0.86952 0.86116 1.84851 1.31134 1.15279 1.94257 1.78156 1.24801 0.93649 1.21316 1.47726 1.51115 1.12467 1.06430 0.68924 1.23774 1.02327 0.97395 0.96091 0.92025 0.87197 0.87115 0.74582 0.92845 0.93056 0.90619 0.90378 0.83259 0.86392 0.88667 0.71094 0.89503 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.68 13.22 21.65 0.29 -55.39 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 42.89 29.55 68.60 2.03 44.92 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.55 -30.76 9.50 67.95 0.65 -30.11 16 8 H 0.08 4.35 7.80 -2.92 -0.02 4.32 16 9 S -0.16 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 11 C 0.53 18.77 7.85 87.66 0.69 19.46 16 12 O -0.57 -26.17 15.86 -3.03 -0.05 -26.22 16 13 N -0.71 -15.85 5.56 -463.07 -2.57 -18.42 16 14 C 0.13 2.53 5.51 86.38 0.48 3.01 16 15 C -0.11 -1.08 3.75 -10.27 -0.04 -1.12 16 16 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 17 C -0.12 -1.13 7.44 31.12 0.23 -0.90 16 18 C 0.08 0.41 4.18 45.44 0.19 0.60 16 19 H 0.12 0.22 7.87 -2.39 -0.02 0.20 16 20 N -0.68 -4.50 6.61 -492.85 -3.26 -7.76 16 21 C 0.14 0.59 6.15 85.56 0.53 1.12 16 22 C 0.31 3.54 7.74 138.23 1.07 4.61 16 23 N -0.56 -10.48 11.21 -304.30 -3.41 -13.89 16 24 C 0.39 7.51 9.46 180.57 1.71 9.22 16 25 O -0.45 -7.19 13.66 -92.06 -1.26 -8.45 16 26 N -0.34 -6.02 12.81 -174.94 -2.24 -8.26 16 27 N -0.45 -4.57 7.44 -50.72 -0.38 -4.95 16 28 H 0.46 1.15 8.96 -213.11 -1.91 -0.76 16 29 C -0.16 -0.95 7.25 31.12 0.23 -0.73 16 30 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 33 H 0.42 6.14 8.47 -92.70 -0.79 5.35 16 34 H 0.05 1.19 7.84 -2.38 -0.02 1.17 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 0.96 8.10 -2.38 -0.02 0.94 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.35 2.19 8.19 -89.70 -0.73 1.46 16 39 H 0.12 0.50 8.13 -2.38 -0.02 0.48 16 40 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.43 2.30 9.06 -74.06 -0.67 1.63 16 42 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 43 H 0.08 0.66 7.58 -2.39 -0.02 0.64 16 Total: -1.00 -88.66 385.61 -8.39 -97.05 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -3.00 Total: 9.17 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.63 Total: 1.92 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -11.57 Total: -108.67 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.31 Total: -34.67 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -88.66 -8.39 -97.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565837249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.053 kcal (2) G-P(sol) polarization free energy of solvation -88.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds