Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00068 * 2 1 4 4 H 1.48502 * 109.47109 * 239.99876 * 3 2 1 5 5 H 1.48500 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47428 * 120.00205 * 3 2 1 7 7 C 1.38813 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00463 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00600 * 180.02562 * 9 7 2 11 11 C 1.53123 * 109.52609 * 205.00217 * 10 9 7 12 12 C 1.53032 * 109.27967 * 182.37575 * 11 10 9 13 13 N 1.46849 * 109.52763 * 59.17554 * 12 11 10 14 14 C 1.46894 * 111.00407 * 174.16408 * 13 12 11 15 15 C 1.53000 * 109.47469 * 170.00096 * 14 13 12 16 16 N 1.46496 * 109.47209 * 179.97438 * 15 14 13 17 17 C 1.34773 * 119.99965 * 179.97438 * 16 15 14 18 18 O 1.21635 * 120.00282 * 0.02562 * 17 16 15 19 19 C 1.47217 * 120.00147 * 179.97438 * 17 16 15 20 20 C 1.47080 * 127.20340 * 0.02562 * 19 17 16 21 21 C 1.34125 * 105.97288 * 179.73785 * 20 19 17 22 22 O 1.34287 * 109.17607 * 0.22569 * 21 20 19 23 23 C 1.33684 * 110.91805 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 125.83187 * 180.02562 * 23 22 21 25 25 C 1.46853 * 111.19420 * 298.25999 * 13 12 11 26 26 C 1.53032 * 109.52201 * 61.74050 * 25 13 12 27 27 H 0.97001 * 119.99903 * 359.97438 * 1 2 3 28 28 H 0.97011 * 119.99237 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.52183 * 325.12490 * 10 9 7 30 30 H 1.08997 * 109.50347 * 62.42725 * 11 10 9 31 31 H 1.09004 * 109.49862 * 302.31237 * 11 10 9 32 32 H 1.08998 * 109.46173 * 299.15949 * 12 11 10 33 33 H 1.09006 * 109.45527 * 179.18671 * 12 11 10 34 34 H 1.08997 * 109.47255 * 49.99268 * 14 13 12 35 35 H 1.09005 * 109.46682 * 289.99807 * 14 13 12 36 36 H 1.09001 * 109.46917 * 59.99660 * 15 14 13 37 37 H 1.08997 * 109.47086 * 299.99839 * 15 14 13 38 38 H 0.97004 * 119.99990 * 0.02562 * 16 15 14 39 39 H 1.08002 * 127.01734 * 0.02562 * 20 19 17 40 40 H 1.07994 * 125.40986 * 180.25375 * 21 20 19 41 41 H 1.09004 * 109.45923 * 181.75640 * 25 13 12 42 42 H 1.09000 * 109.46257 * 301.72288 * 25 13 12 43 43 H 1.08999 * 109.50023 * 180.87778 * 26 25 13 44 44 H 1.08998 * 109.50529 * 60.76430 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.1816 -4.7542 -0.6085 12 6 1.9289 -6.0883 -0.5504 13 7 2.2482 -6.4118 0.8460 14 6 2.8430 -7.7506 0.9536 15 6 3.3877 -7.9545 2.3687 16 7 3.9803 -9.2899 2.4762 17 6 4.5271 -9.6928 3.6402 18 8 4.5282 -8.9479 4.6017 19 6 5.1222 -11.0350 3.7484 20 6 5.2066 -12.0579 2.6949 21 6 5.8312 -13.1077 3.2490 22 8 6.1255 -12.8214 4.5275 23 6 5.7091 -11.5925 4.8495 24 17 5.8909 -10.8313 6.3991 25 6 3.1278 -5.3960 1.4385 26 6 2.4161 -4.0412 1.4398 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.9705 -3.5511 -0.5851 30 1 0.9585 -4.5068 -1.6463 31 1 0.2520 -4.8330 -0.0446 32 1 2.8516 -6.0131 -1.1258 33 1 1.3017 -6.8744 -0.9710 34 1 3.6561 -7.8459 0.2340 35 1 2.0830 -8.5036 0.7448 36 1 2.5744 -7.8593 3.0883 37 1 4.1476 -7.2016 2.5775 38 1 3.9798 -9.8839 1.7093 39 1 4.8442 -11.9782 1.6806 40 1 6.0612 -14.0355 2.7465 41 1 3.3715 -5.6793 2.4625 42 1 4.0448 -5.3240 0.8537 43 1 3.0751 -3.2845 1.8654 44 1 1.5061 -4.1088 2.0359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569884205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = 0.183168 kcal Electronic energy + Delta-G solvation = -26376.291476 eV Core-core repulsion = 22356.954225 eV Total energy + Delta-G solvation = -4019.337251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.17235 -39.83734 -38.82144 -37.44945 -35.80447 -34.46154 -33.57477 -32.22752 -30.59601 -30.20605 -29.78399 -27.81878 -24.78373 -23.74729 -23.28022 -22.33781 -21.78039 -21.02261 -20.57956 -19.31079 -19.00195 -17.05375 -17.03056 -16.88688 -16.50452 -15.75636 -15.59296 -15.35508 -14.68768 -14.58449 -14.36445 -14.04211 -13.75589 -13.56346 -13.48713 -13.44438 -13.20726 -12.87806 -12.57713 -12.41544 -11.88806 -11.70001 -11.59441 -11.53208 -11.15880 -10.84004 -10.74145 -10.55985 -10.48679 -10.33034 -10.21111 -10.18174 -9.69940 -9.55497 -9.38645 -9.15699 -8.82822 -8.23191 -6.90993 -5.72642 -3.01030 0.60303 0.64375 1.40905 2.68084 2.92550 2.95222 3.46263 3.50685 3.51637 3.99491 4.05702 4.21175 4.61241 4.61960 4.63571 4.87797 4.93722 5.01778 5.20959 5.23871 5.35430 5.44812 5.52726 5.60520 5.63572 5.69389 5.74735 5.79235 5.91202 6.06673 6.08422 6.17010 6.17213 6.30449 6.50926 6.53963 6.68937 6.90945 7.09704 7.15874 7.24644 7.27630 7.72696 7.89826 8.46206 9.57039 10.16016 10.50847 11.50003 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.001769 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.226822 B =15825.830043 C =16716.116521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.177 3.823 11 C -0.121 4.121 12 C 0.064 3.936 13 N -0.531 5.531 14 C 0.046 3.954 15 C 0.115 3.885 16 N -0.720 5.720 17 C 0.584 3.416 18 O -0.522 6.522 19 C -0.209 4.209 20 C -0.183 4.183 21 C -0.017 4.017 22 O -0.169 6.169 23 C 0.099 3.901 24 Cl 0.063 6.937 25 C 0.049 3.951 26 C -0.132 4.132 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.167 0.833 40 H 0.219 0.781 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.064 0.936 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.315 -31.434 4.303 33.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.086 0.914 9 N -0.364 5.364 10 C 0.067 3.933 11 C -0.160 4.160 12 C -0.064 4.064 13 N -0.257 5.257 14 C -0.083 4.083 15 C -0.008 4.008 16 N -0.372 5.372 17 C 0.371 3.629 18 O -0.399 6.399 19 C -0.215 4.215 20 C -0.203 4.203 21 C -0.083 4.083 22 O -0.066 6.066 23 C 0.019 3.981 24 Cl 0.092 6.908 25 C -0.079 4.079 26 C -0.173 4.173 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.233 0.767 39 H 0.184 0.816 40 H 0.235 0.765 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.132 -30.811 5.569 33.231 hybrid contribution 0.905 0.676 -0.831 1.402 sum 12.037 -30.136 4.738 32.795 Atomic orbital electron populations 1.69652 1.05068 1.25682 1.57759 1.24737 0.95514 0.97637 1.03172 0.86285 0.78519 0.83687 0.77798 1.21369 1.21726 1.21301 1.19192 0.90898 0.84209 1.42574 0.91367 1.42411 1.05789 0.99713 1.88529 1.20234 0.94139 0.86111 0.92789 1.21861 0.99658 0.93173 1.01300 1.22056 0.98834 0.98199 0.87281 1.61991 1.44380 1.00642 1.18646 1.22214 0.98063 0.93016 0.94978 1.21597 0.98644 0.82796 0.97766 1.45674 1.60307 1.17865 1.13348 1.16999 0.78069 0.84740 0.83128 1.90880 1.57400 1.54625 1.36960 1.21108 1.09484 0.97489 0.93392 1.22875 1.04510 0.92556 1.00344 1.24011 1.02281 1.01422 0.80545 1.83755 1.63846 1.29255 1.29710 1.22738 0.99870 0.84578 0.90895 1.98505 1.95926 1.74969 1.21425 1.22324 0.93762 0.92865 0.98929 1.22311 1.00548 0.93297 1.01121 0.93514 0.78239 0.94124 0.91483 0.91245 0.95051 0.91225 0.94512 0.90275 0.90051 0.90559 0.76684 0.81553 0.76486 0.90790 0.95267 0.91709 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -18.32 5.13 -53.31 -0.27 -18.59 16 10 C 0.18 3.54 2.84 -67.81 -0.19 3.35 16 11 C -0.12 -2.01 5.57 -26.65 -0.15 -2.15 16 12 C 0.06 0.85 5.42 -3.84 -0.02 0.82 16 13 N -0.53 -6.90 4.81 -234.67 -1.13 -8.03 16 14 C 0.05 0.44 5.39 -3.83 -0.02 0.42 16 15 C 0.12 1.19 4.92 -4.04 -0.02 1.17 16 16 N -0.72 -6.25 5.55 -61.45 -0.34 -6.59 16 17 C 0.58 6.51 7.81 -12.61 -0.10 6.41 16 18 O -0.52 -7.70 15.65 5.25 0.08 -7.62 16 19 C -0.21 -1.89 6.32 -103.24 -0.65 -2.54 16 20 C -0.18 -0.95 10.60 -37.45 -0.40 -1.34 16 21 C -0.02 -0.07 12.03 29.28 0.35 0.28 16 22 O -0.17 -1.27 10.53 7.38 0.08 -1.19 16 23 C 0.10 0.92 7.99 30.16 0.24 1.16 16 24 Cl 0.06 0.62 27.91 -51.86 -1.45 -0.83 16 25 C 0.05 0.71 4.85 -3.83 -0.02 0.69 16 26 C -0.13 -2.41 5.68 -26.66 -0.15 -2.56 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.38 10.35 7.80 -40.82 -0.32 10.03 16 29 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.04 0.32 8.08 -51.93 -0.42 -0.09 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.89 6.21 -51.93 -0.32 0.57 16 38 H 0.40 2.20 7.64 -40.82 -0.31 1.89 16 39 H 0.17 0.34 7.74 -52.49 -0.41 -0.06 16 40 H 0.22 -0.03 8.06 -52.49 -0.42 -0.45 16 41 H 0.07 1.01 5.81 -51.93 -0.30 0.71 16 42 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -33.86 377.16 -9.29 -43.15 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.27 Total: 5.73 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.37 Total: -1.61 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -1.02 Total: -60.94 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.16 Total: -8.81 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -1.45 Total: -0.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.86 -9.29 -43.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569884205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.337 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds