Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00068 * 2 1 4 4 H 1.48502 * 109.47109 * 239.99876 * 3 2 1 5 5 H 1.48500 * 109.47421 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47428 * 120.00205 * 3 2 1 7 7 C 1.38813 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00463 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00600 * 180.02562 * 9 7 2 11 11 C 1.53123 * 109.52609 * 205.00217 * 10 9 7 12 12 C 1.53032 * 109.27967 * 182.37575 * 11 10 9 13 13 N 1.46849 * 109.52763 * 59.17554 * 12 11 10 14 14 C 1.46894 * 111.00407 * 174.16408 * 13 12 11 15 15 C 1.53000 * 109.47469 * 170.00096 * 14 13 12 16 16 N 1.46496 * 109.47209 * 179.97438 * 15 14 13 17 17 C 1.34773 * 119.99965 * 179.97438 * 16 15 14 18 18 O 1.21635 * 120.00282 * 0.02562 * 17 16 15 19 19 C 1.47217 * 120.00147 * 179.97438 * 17 16 15 20 20 C 1.47080 * 127.20340 * 0.02562 * 19 17 16 21 21 C 1.34125 * 105.97288 * 179.73785 * 20 19 17 22 22 O 1.34287 * 109.17607 * 0.22569 * 21 20 19 23 23 C 1.33684 * 110.91805 * 0.02562 * 22 21 20 24 24 Cl 1.73598 * 125.83187 * 180.02562 * 23 22 21 25 25 C 1.46853 * 111.19420 * 298.25999 * 13 12 11 26 26 C 1.53032 * 109.52201 * 61.74050 * 25 13 12 27 27 H 0.97001 * 119.99903 * 359.97438 * 1 2 3 28 28 H 0.97011 * 119.99237 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.52183 * 325.12490 * 10 9 7 30 30 H 1.08997 * 109.50347 * 62.42725 * 11 10 9 31 31 H 1.09004 * 109.49862 * 302.31237 * 11 10 9 32 32 H 1.08998 * 109.46173 * 299.15949 * 12 11 10 33 33 H 1.09006 * 109.45527 * 179.18671 * 12 11 10 34 34 H 1.08997 * 109.47255 * 49.99268 * 14 13 12 35 35 H 1.09005 * 109.46682 * 289.99807 * 14 13 12 36 36 H 1.09001 * 109.46917 * 59.99660 * 15 14 13 37 37 H 1.08997 * 109.47086 * 299.99839 * 15 14 13 38 38 H 0.97004 * 119.99990 * 0.02562 * 16 15 14 39 39 H 1.08002 * 127.01734 * 0.02562 * 20 19 17 40 40 H 1.07994 * 125.40986 * 180.25375 * 21 20 19 41 41 H 1.09004 * 109.45923 * 181.75640 * 25 13 12 42 42 H 1.09000 * 109.46257 * 301.72288 * 25 13 12 43 43 H 1.08999 * 109.50023 * 180.87778 * 26 25 13 44 44 H 1.08998 * 109.50529 * 60.76430 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.1816 -4.7542 -0.6085 12 6 1.9289 -6.0883 -0.5504 13 7 2.2482 -6.4118 0.8460 14 6 2.8430 -7.7506 0.9536 15 6 3.3877 -7.9545 2.3687 16 7 3.9803 -9.2899 2.4762 17 6 4.5271 -9.6928 3.6402 18 8 4.5282 -8.9479 4.6017 19 6 5.1222 -11.0350 3.7484 20 6 5.2066 -12.0579 2.6949 21 6 5.8312 -13.1077 3.2490 22 8 6.1255 -12.8214 4.5275 23 6 5.7091 -11.5925 4.8495 24 17 5.8909 -10.8313 6.3991 25 6 3.1278 -5.3960 1.4385 26 6 2.4161 -4.0412 1.4398 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.9705 -3.5511 -0.5851 30 1 0.9585 -4.5068 -1.6463 31 1 0.2520 -4.8330 -0.0446 32 1 2.8516 -6.0131 -1.1258 33 1 1.3017 -6.8744 -0.9710 34 1 3.6561 -7.8459 0.2340 35 1 2.0830 -8.5036 0.7448 36 1 2.5744 -7.8593 3.0883 37 1 4.1476 -7.2016 2.5775 38 1 3.9798 -9.8839 1.7093 39 1 4.8442 -11.9782 1.6806 40 1 6.0612 -14.0355 2.7465 41 1 3.3715 -5.6793 2.4625 42 1 4.0448 -5.3240 0.8537 43 1 3.0751 -3.2845 1.8654 44 1 1.5061 -4.1088 2.0359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569884205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -25.284472 kcal Electronic energy + Delta-G solvation = -26377.395836 eV Core-core repulsion = 22356.954225 eV Total energy + Delta-G solvation = -4020.441611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.67429 -40.72744 -39.97850 -38.11343 -37.11500 -35.75025 -34.31405 -33.78818 -31.86503 -31.46004 -30.64080 -29.03268 -26.25538 -24.93221 -24.46824 -23.37024 -22.60535 -22.05319 -21.28989 -20.72281 -19.61490 -19.08970 -17.68080 -17.58345 -17.34661 -16.81492 -16.61011 -16.26175 -16.04986 -15.63434 -15.47236 -15.34539 -15.20017 -14.80854 -14.46505 -14.23180 -14.16645 -13.94167 -13.85467 -13.26667 -13.11281 -12.98784 -12.84424 -12.66143 -12.49279 -12.35380 -12.21947 -12.19857 -12.02991 -11.75027 -11.50386 -11.22906 -11.13977 -11.01179 -10.83379 -10.16664 -9.71032 -9.23713 -8.98559 -7.93361 -5.21558 -0.01255 0.01786 1.03004 1.46017 1.49163 1.55170 1.93672 2.18881 2.46027 2.56316 3.04722 3.39026 3.56303 3.64625 3.78705 3.83530 4.03264 4.09867 4.16135 4.21843 4.35333 4.37589 4.45463 4.52410 4.57630 4.71558 4.73249 4.76614 4.89544 4.95164 4.98436 5.00028 5.13574 5.19779 5.23078 5.35158 5.45287 5.50031 5.62052 5.70687 6.11571 6.18204 6.29295 6.47745 7.14775 7.34435 8.12160 8.35222 9.29974 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.001769 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.226822 B =15825.830043 C =16716.116521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.738 5.738 10 C 0.171 3.829 11 C -0.114 4.114 12 C 0.073 3.927 13 N -0.544 5.544 14 C 0.055 3.945 15 C 0.121 3.879 16 N -0.702 5.702 17 C 0.578 3.422 18 O -0.568 6.568 19 C -0.223 4.223 20 C -0.183 4.183 21 C -0.002 4.002 22 O -0.176 6.176 23 C 0.074 3.926 24 Cl 0.042 6.958 25 C 0.062 3.938 26 C -0.124 4.124 27 H 0.250 0.750 28 H 0.372 0.628 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.418 0.582 39 H 0.202 0.798 40 H 0.265 0.735 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.042 0.958 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.589 -34.390 2.369 36.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.063 3.937 11 C -0.152 4.152 12 C -0.055 4.055 13 N -0.270 5.270 14 C -0.073 4.073 15 C -0.003 4.003 16 N -0.355 5.355 17 C 0.366 3.634 18 O -0.449 6.449 19 C -0.229 4.229 20 C -0.202 4.202 21 C -0.067 4.067 22 O -0.073 6.073 23 C -0.005 4.005 24 Cl 0.071 6.929 25 C -0.067 4.067 26 C -0.164 4.164 27 H 0.059 0.941 28 H 0.203 0.797 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.256 0.744 39 H 0.219 0.781 40 H 0.281 0.719 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.445 -33.841 3.598 36.236 hybrid contribution 0.528 1.461 -0.270 1.577 sum 12.972 -32.379 3.329 35.040 Atomic orbital electron populations 1.69813 1.06549 1.26008 1.59686 1.25557 0.96408 1.01053 1.04042 0.85236 0.77208 0.79352 0.78124 1.20298 1.22154 1.20656 1.19564 0.91270 0.85399 1.40816 0.90975 1.42643 1.05413 1.01030 1.88633 1.20495 0.94139 0.85234 0.93872 1.21749 0.98916 0.94077 1.00486 1.21997 0.99296 0.96709 0.87533 1.61912 1.44688 1.01715 1.18648 1.22221 0.99298 0.91270 0.94518 1.21399 0.97596 0.83263 0.98029 1.45460 1.59128 1.17461 1.13420 1.17390 0.77737 0.85287 0.82991 1.90855 1.59279 1.56109 1.38613 1.21188 1.09573 0.97265 0.94880 1.23258 1.04762 0.91221 1.00974 1.25043 1.00130 1.02565 0.79005 1.83774 1.63810 1.28287 1.31462 1.22769 1.01510 0.85645 0.90568 1.98487 1.96098 1.75562 1.22733 1.22107 0.93574 0.91120 0.99868 1.22104 0.99650 0.95397 0.99269 0.94098 0.79660 0.94627 0.91665 0.92379 0.94046 0.88207 0.92448 0.87904 0.91973 0.92152 0.74448 0.78130 0.71895 0.90158 0.94521 0.93885 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 47.13 29.55 68.60 2.03 49.15 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 7 C -0.24 -13.56 9.93 84.03 0.83 -12.72 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -38.25 5.13 -322.58 -1.65 -39.90 16 10 C 0.17 6.86 2.84 45.07 0.13 6.99 16 11 C -0.11 -3.65 5.57 30.65 0.17 -3.48 16 12 C 0.07 1.67 5.42 86.32 0.47 2.14 16 13 N -0.54 -12.75 4.81 -896.36 -4.31 -17.06 16 14 C 0.05 0.85 5.39 86.30 0.46 1.31 16 15 C 0.12 2.29 4.92 86.38 0.43 2.71 16 16 N -0.70 -10.61 5.55 -466.58 -2.59 -13.20 16 17 C 0.58 12.45 7.81 86.60 0.68 13.13 16 18 O -0.57 -17.23 15.65 -4.14 -0.06 -17.30 16 19 C -0.22 -3.72 6.32 -18.97 -0.12 -3.84 16 20 C -0.18 -1.22 10.60 23.65 0.25 -0.97 16 21 C 0.00 -0.01 12.03 66.88 0.80 0.79 16 22 O -0.18 -2.33 10.53 3.49 0.04 -2.29 16 23 C 0.07 1.36 7.99 67.45 0.54 1.90 16 24 Cl 0.04 0.87 27.91 -2.72 -0.08 0.80 16 25 C 0.06 1.71 4.85 86.32 0.42 2.13 16 26 C -0.12 -4.59 5.68 30.64 0.17 -4.41 16 27 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.37 20.74 7.80 -92.70 -0.72 20.02 16 29 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 1.79 8.12 -2.38 -0.02 1.77 16 34 H 0.06 0.72 8.08 -2.39 -0.02 0.71 16 35 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.36 6.21 -2.39 -0.01 1.34 16 38 H 0.42 3.01 7.64 -92.71 -0.71 2.30 16 39 H 0.20 -0.23 7.74 -2.91 -0.02 -0.26 16 40 H 0.27 -1.53 8.06 -2.91 -0.02 -1.55 16 41 H 0.08 2.15 5.81 -2.39 -0.01 2.14 16 42 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -77.48 377.16 -1.04 -78.52 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -0.39 Total: 20.03 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.70 Total: 1.54 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -8.27 Total: -130.45 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.03 Total: -19.59 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 17 Polarization: 0.87 SS G_CDS: -0.08 Total: 0.80 kcal Total: -77.48 -1.04 -78.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569884205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.232 kcal (2) G-P(sol) polarization free energy of solvation -77.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds