Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36594 * 126.57934 * 2 1 4 4 C 1.47521 * 125.77335 * 359.97399 * 3 2 1 5 5 O 1.21595 * 119.99577 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00026 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.46579 * 64.99925 * 8 7 6 10 10 C 1.52999 * 109.47054 * 185.00191 * 8 7 6 11 11 N 1.46496 * 109.47070 * 305.00371 * 8 7 6 12 12 C 1.34778 * 120.00031 * 154.99902 * 11 8 7 13 13 O 1.21288 * 119.99882 * 0.02562 * 12 11 8 14 14 C 1.50703 * 120.00070 * 179.97438 * 12 11 8 15 15 S 1.81004 * 109.46849 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99751 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00248 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99798 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00121 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99952 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47094 * 59.99696 * 20 18 16 22 22 H 1.48499 * 109.46930 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47014 * 300.00020 * 20 18 16 24 24 N 1.34406 * 108.45885 * 180.24274 * 3 2 1 25 25 N 1.28761 * 109.52080 * 359.58071 * 24 3 2 26 26 N 1.34813 * 126.57871 * 179.97438 * 2 1 3 27 27 C 1.46504 * 126.59741 * 0.02562 * 26 2 1 28 28 H 1.09010 * 109.46871 * 90.00601 * 1 2 3 29 29 H 1.09003 * 109.47433 * 209.99607 * 1 2 3 30 30 H 1.08999 * 109.47276 * 330.00643 * 1 2 3 31 31 H 0.96992 * 120.00503 * 359.97438 * 6 4 3 32 32 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 33 33 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 34 34 H 1.09002 * 109.47069 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47018 * 300.00144 * 10 8 7 36 36 H 1.08995 * 109.47070 * 60.00530 * 10 8 7 37 37 H 0.97002 * 120.00388 * 335.00331 * 11 8 7 38 38 H 1.08995 * 109.46722 * 299.99630 * 14 12 11 39 39 H 1.08999 * 109.47232 * 60.00197 * 14 12 11 40 40 H 0.97001 * 120.00240 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47200 * 89.99909 * 27 26 2 42 42 H 1.09004 * 109.46748 * 209.99879 * 27 26 2 43 43 H 1.08997 * 109.46698 * 329.99630 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6859 2.7627 -0.0015 6 7 2.7817 3.4987 -0.0010 7 6 2.3375 4.8947 -0.0021 8 6 3.5575 5.8181 -0.0018 9 1 4.1099 5.6905 -0.9328 10 6 3.0968 7.2718 0.1228 11 7 4.4242 5.4817 1.1304 12 6 5.7403 5.7677 1.0797 13 8 6.2070 6.3039 0.0970 14 6 6.6318 5.4221 2.2446 15 16 8.3303 5.9271 1.8750 16 6 9.1303 5.4200 3.3607 17 1 8.5592 4.9526 4.1492 18 6 10.4945 5.6223 3.5182 19 7 11.1903 6.1933 2.5578 20 14 11.3426 5.0853 5.0936 21 1 11.1741 3.6208 5.2721 22 1 12.7891 5.4116 5.0129 23 1 10.7387 5.7975 6.2484 24 7 3.5984 0.6789 -0.0054 25 7 3.6299 -0.6083 0.0001 26 7 2.3104 -1.0826 0.0005 27 6 1.8863 -2.4849 0.0006 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 3.7292 3.2913 -0.0006 32 1 1.7374 5.0857 0.8876 33 1 1.7380 5.0846 -0.8924 34 1 3.9659 7.9296 0.1226 35 1 2.4519 7.5220 -0.7196 36 1 2.5445 7.3993 1.0538 37 1 4.0509 5.0532 1.9164 38 1 6.2832 5.9435 3.1360 39 1 6.6026 4.3464 2.4180 40 1 12.1436 6.3350 2.6680 41 1 1.7815 -2.8329 -1.0270 42 1 2.6329 -3.0902 0.5148 43 1 0.9291 -2.5750 0.5141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583607157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = 16.395289 kcal Electronic energy + Delta-G solvation = -26471.261511 eV Core-core repulsion = 22486.963727 eV Total energy + Delta-G solvation = -3984.297783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.58703 -39.91883 -39.08580 -36.35783 -35.33513 -33.74766 -32.70141 -32.39495 -31.43876 -28.88916 -28.48993 -27.88988 -26.41879 -25.44766 -23.55628 -21.86020 -21.36651 -20.63564 -20.31579 -18.42255 -17.77228 -16.83984 -16.70766 -16.51909 -16.13418 -15.77100 -15.15887 -14.88588 -14.77179 -14.59156 -14.42245 -14.14213 -13.83492 -13.75483 -13.48778 -13.27044 -13.09302 -12.98181 -12.88198 -12.69279 -12.52910 -12.24907 -12.02509 -11.79523 -11.48625 -11.12533 -11.01217 -11.00840 -10.73716 -10.59379 -10.34210 -9.79331 -9.57908 -9.40108 -9.22291 -9.03724 -8.95310 -8.20674 -6.46128 -6.18297 -3.88458 0.76906 1.42558 1.65287 2.84423 3.01670 3.06558 3.11174 3.26214 3.29902 3.33574 3.72772 3.83322 3.95350 4.16061 4.23748 4.36531 4.44840 4.46790 4.70826 4.88711 4.95307 5.00391 5.13167 5.16776 5.19633 5.25695 5.32755 5.37823 5.44919 5.56897 5.61533 5.69026 5.92567 5.97164 5.99610 6.07727 6.18622 6.22807 6.62185 7.18934 7.62655 7.65452 7.69268 7.92174 8.38448 8.61478 9.26998 10.89079 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.002520 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.173025 B =11107.135016 C =13203.677595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.123 3.877 3 C -0.110 4.110 4 C 0.609 3.391 5 O -0.540 6.540 6 N -0.713 5.713 7 C 0.114 3.886 8 C 0.131 3.869 9 H 0.096 0.904 10 C -0.160 4.160 11 N -0.737 5.737 12 C 0.535 3.465 13 O -0.515 6.515 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 N -0.197 5.197 25 N -0.062 5.062 26 N -0.366 5.366 27 C 0.087 3.913 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.414 0.586 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.399 0.601 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.639 -14.158 -4.923 30.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.015 4.015 3 C -0.250 4.250 4 C 0.394 3.606 5 O -0.417 6.417 6 N -0.365 5.365 7 C -0.010 4.010 8 C 0.026 3.974 9 H 0.114 0.886 10 C -0.219 4.219 11 N -0.393 5.393 12 C 0.321 3.679 13 O -0.388 6.388 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 N -0.071 5.071 25 N -0.041 5.041 26 N -0.151 5.151 27 C -0.055 4.055 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.250 0.750 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.026 -13.429 -6.648 29.170 hybrid contribution -0.614 -1.312 2.552 2.934 sum -25.640 -14.741 -4.096 29.858 Atomic orbital electron populations 1.20723 0.84608 1.05391 1.04659 1.21915 0.96221 0.86382 0.96995 1.21160 0.89169 0.95315 1.19332 1.16664 0.85398 0.82525 0.76051 1.90759 1.15838 1.83719 1.51425 1.45782 1.10834 1.05638 1.74241 1.21769 0.96352 0.79290 1.03576 1.21147 0.90164 0.94257 0.91873 0.88586 1.22111 1.02300 0.95382 1.02137 1.46136 1.08306 1.64728 1.20088 1.20317 0.81490 0.77486 0.88604 1.90707 1.74146 1.40705 1.33276 1.23541 1.03210 1.04921 0.98829 1.85371 0.93085 1.79448 1.25305 1.22828 0.96042 1.46393 1.03080 0.91007 1.24984 0.96305 0.94796 0.97479 1.70006 1.08035 1.40165 1.32124 0.86235 0.78170 0.79119 0.82041 1.19929 1.20831 1.19976 1.74675 1.18823 1.04240 1.09327 1.82092 0.95705 1.03354 1.22979 1.50341 1.06548 1.07835 1.50420 1.22187 1.02485 0.76006 1.04788 0.88974 0.90656 0.86960 0.74960 0.90481 0.89679 0.91011 0.91503 0.92183 0.76722 0.89259 0.89138 0.92156 0.89158 0.87903 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 9.57 36.00 0.34 -0.17 16 2 C 0.12 1.09 7.02 -81.88 -0.57 0.52 16 3 C -0.11 -1.29 6.99 -83.55 -0.58 -1.87 16 4 C 0.61 7.13 7.82 -12.48 -0.10 7.03 16 5 O -0.54 -6.83 14.72 5.28 0.08 -6.75 16 6 N -0.71 -7.67 5.38 -61.35 -0.33 -8.00 16 7 C 0.11 1.06 5.23 -4.04 -0.02 1.03 16 8 C 0.13 1.43 2.73 -67.93 -0.19 1.25 16 9 H 0.10 1.22 7.58 -51.93 -0.39 0.83 16 10 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 11 N -0.74 -9.40 4.52 -53.80 -0.24 -9.65 16 12 C 0.53 9.69 7.81 -10.98 -0.09 9.61 16 13 O -0.51 -11.32 15.53 5.55 0.09 -11.23 16 14 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 20 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 N -0.20 -2.65 12.04 32.85 0.40 -2.26 16 25 N -0.06 -0.77 13.78 60.35 0.83 0.07 16 26 N -0.37 -3.09 4.03 -63.59 -0.26 -3.35 16 27 C 0.09 0.26 11.33 59.85 0.68 0.94 16 28 H 0.09 0.41 8.14 -51.92 -0.42 -0.02 16 29 H 0.07 0.19 7.18 -51.93 -0.37 -0.18 16 30 H 0.11 0.78 6.43 -51.93 -0.33 0.44 16 31 H 0.41 4.80 7.82 -40.82 -0.32 4.48 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.40 4.22 8.60 -40.82 -0.35 3.87 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.04 7.16 -51.93 -0.37 -0.33 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -37.99 386.12 -5.79 -43.78 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.91 Total: 3.30 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 0.25 Total: 1.12 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 1.13 Total: -48.87 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.16 Total: -17.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.99 -5.79 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583607157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.176 kcal (2) G-P(sol) polarization free energy of solvation -37.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds