Wall clock time and date at job start Sat Apr 11 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36594 * 126.57934 * 2 1 4 4 C 1.47521 * 125.77335 * 359.97399 * 3 2 1 5 5 O 1.21595 * 119.99577 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00026 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.46579 * 64.99925 * 8 7 6 10 10 C 1.52999 * 109.47054 * 185.00191 * 8 7 6 11 11 N 1.46496 * 109.47070 * 305.00371 * 8 7 6 12 12 C 1.34778 * 120.00031 * 154.99902 * 11 8 7 13 13 O 1.21288 * 119.99882 * 0.02562 * 12 11 8 14 14 C 1.50703 * 120.00070 * 179.97438 * 12 11 8 15 15 S 1.81004 * 109.46849 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99751 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00248 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99798 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00121 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99952 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47094 * 59.99696 * 20 18 16 22 22 H 1.48499 * 109.46930 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47014 * 300.00020 * 20 18 16 24 24 N 1.34406 * 108.45885 * 180.24274 * 3 2 1 25 25 N 1.28761 * 109.52080 * 359.58071 * 24 3 2 26 26 N 1.34813 * 126.57871 * 179.97438 * 2 1 3 27 27 C 1.46504 * 126.59741 * 0.02562 * 26 2 1 28 28 H 1.09010 * 109.46871 * 90.00601 * 1 2 3 29 29 H 1.09003 * 109.47433 * 209.99607 * 1 2 3 30 30 H 1.08999 * 109.47276 * 330.00643 * 1 2 3 31 31 H 0.96992 * 120.00503 * 359.97438 * 6 4 3 32 32 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 33 33 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 34 34 H 1.09002 * 109.47069 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47018 * 300.00144 * 10 8 7 36 36 H 1.08995 * 109.47070 * 60.00530 * 10 8 7 37 37 H 0.97002 * 120.00388 * 335.00331 * 11 8 7 38 38 H 1.08995 * 109.46722 * 299.99630 * 14 12 11 39 39 H 1.08999 * 109.47232 * 60.00197 * 14 12 11 40 40 H 0.97001 * 120.00240 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47200 * 89.99909 * 27 26 2 42 42 H 1.09004 * 109.46748 * 209.99879 * 27 26 2 43 43 H 1.08997 * 109.46698 * 329.99630 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6859 2.7627 -0.0015 6 7 2.7817 3.4987 -0.0010 7 6 2.3375 4.8947 -0.0021 8 6 3.5575 5.8181 -0.0018 9 1 4.1099 5.6905 -0.9328 10 6 3.0968 7.2718 0.1228 11 7 4.4242 5.4817 1.1304 12 6 5.7403 5.7677 1.0797 13 8 6.2070 6.3039 0.0970 14 6 6.6318 5.4221 2.2446 15 16 8.3303 5.9271 1.8750 16 6 9.1303 5.4200 3.3607 17 1 8.5592 4.9526 4.1492 18 6 10.4945 5.6223 3.5182 19 7 11.1903 6.1933 2.5578 20 14 11.3426 5.0853 5.0936 21 1 11.1741 3.6208 5.2721 22 1 12.7891 5.4116 5.0129 23 1 10.7387 5.7975 6.2484 24 7 3.5984 0.6789 -0.0054 25 7 3.6299 -0.6083 0.0001 26 7 2.3104 -1.0826 0.0005 27 6 1.8863 -2.4849 0.0006 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 3.7292 3.2913 -0.0006 32 1 1.7374 5.0857 0.8876 33 1 1.7380 5.0846 -0.8924 34 1 3.9659 7.9296 0.1226 35 1 2.4519 7.5220 -0.7196 36 1 2.5445 7.3993 1.0538 37 1 4.0509 5.0532 1.9164 38 1 6.2832 5.9435 3.1360 39 1 6.6026 4.3464 2.4180 40 1 12.1436 6.3350 2.6680 41 1 1.7815 -2.8329 -1.0270 42 1 2.6329 -3.0902 0.5148 43 1 0.9291 -2.5750 0.5141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583607157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:53 Heat of formation + Delta-G solvation = -14.315622 kcal Electronic energy + Delta-G solvation = -26472.593236 eV Core-core repulsion = 22486.963727 eV Total energy + Delta-G solvation = -3985.629508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.32359 -41.01795 -40.23411 -37.45837 -35.98552 -34.76415 -34.57630 -33.34576 -32.63482 -30.07573 -29.39486 -28.34352 -27.65249 -27.20357 -24.37968 -22.88974 -22.03697 -21.61950 -21.42271 -19.89362 -19.10884 -17.96490 -17.64550 -17.46698 -16.96639 -16.87569 -16.71316 -16.36064 -16.17832 -15.73074 -15.29158 -15.22865 -14.76671 -14.59678 -14.30310 -14.18799 -14.04906 -13.96182 -13.90055 -13.54644 -13.29419 -13.21905 -13.16156 -12.97546 -12.93273 -12.86705 -12.60161 -12.20533 -12.03418 -11.73346 -11.24386 -11.14729 -11.12751 -10.93783 -10.38033 -10.27449 -10.18469 -10.03343 -8.65212 -8.34169 -6.11661 0.09864 0.55836 1.12665 1.26814 1.43415 1.46166 1.56271 1.62257 2.03775 2.17359 2.26686 2.31484 2.99666 3.16041 3.32538 3.43015 3.56772 3.60612 3.74711 3.98741 4.08224 4.26065 4.28908 4.33566 4.37422 4.51979 4.58021 4.61134 4.66052 4.67020 4.72871 4.77644 4.86968 5.02629 5.05659 5.23199 5.36888 5.41781 5.48844 5.51808 6.19918 6.29867 6.47646 6.84381 7.06115 7.06984 7.24259 8.74782 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.002520 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.173025 B =11107.135016 C =13203.677595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.133 3.867 3 C -0.138 4.138 4 C 0.610 3.390 5 O -0.552 6.552 6 N -0.715 5.715 7 C 0.123 3.877 8 C 0.134 3.866 9 H 0.077 0.923 10 C -0.155 4.155 11 N -0.711 5.711 12 C 0.539 3.461 13 O -0.559 6.559 14 C -0.132 4.132 15 S -0.147 6.147 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.997 3.003 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.262 1.262 24 N -0.230 5.230 25 N -0.100 5.100 26 N -0.354 5.354 27 C 0.072 3.928 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.409 0.591 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.271 0.729 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.566 -15.955 -3.471 33.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.007 4.007 3 C -0.279 4.279 4 C 0.395 3.605 5 O -0.430 6.430 6 N -0.365 5.365 7 C 0.000 4.000 8 C 0.029 3.971 9 H 0.095 0.905 10 C -0.214 4.214 11 N -0.366 5.366 12 C 0.325 3.675 13 O -0.437 6.437 14 C -0.283 4.283 15 S 0.080 5.920 16 C -0.695 4.695 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.186 1.186 24 N -0.102 5.102 25 N -0.080 5.080 26 N -0.140 5.140 27 C -0.067 4.067 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.244 0.756 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -28.001 -15.264 -5.181 32.309 hybrid contribution 0.096 -0.845 2.040 2.210 sum -27.904 -16.108 -3.141 32.373 Atomic orbital electron populations 1.20856 0.81833 1.06465 1.05785 1.22446 0.97589 0.85645 0.95009 1.21417 0.89358 0.96119 1.20970 1.16709 0.85270 0.82752 0.75795 1.90745 1.16047 1.83950 1.52235 1.45838 1.10480 1.06153 1.74051 1.21780 0.95275 0.78028 1.04953 1.21253 0.90118 0.95666 0.90056 0.90506 1.22063 1.01577 0.93549 1.04209 1.45875 1.06551 1.63040 1.21151 1.19961 0.82874 0.77344 0.87314 1.90699 1.75275 1.43091 1.34605 1.23386 0.98675 1.05798 1.00436 1.85521 0.99218 1.80504 1.26730 1.23170 0.96739 1.46425 1.03188 0.90101 1.26119 0.97085 0.94556 1.01389 1.70173 1.08412 1.41517 1.34616 0.85024 0.76856 0.79067 0.77174 1.18805 1.20290 1.18620 1.74625 1.20185 1.04982 1.10457 1.81972 0.98107 1.03189 1.24694 1.50672 1.05255 1.09544 1.48504 1.22722 1.04148 0.73218 1.06626 0.87585 0.87072 0.88321 0.75574 0.88929 0.88358 0.94010 0.89098 0.90425 0.74985 0.87319 0.87637 0.91988 0.87306 0.87459 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.57 71.23 0.68 -0.03 16 2 C 0.13 2.14 7.02 41.72 0.29 2.44 16 3 C -0.14 -3.17 6.99 40.81 0.29 -2.88 16 4 C 0.61 13.76 7.82 86.69 0.68 14.44 16 5 O -0.55 -13.09 14.72 -4.02 -0.06 -13.15 16 6 N -0.71 -14.80 5.38 -466.27 -2.51 -17.31 16 7 C 0.12 2.04 5.23 86.38 0.45 2.50 16 8 C 0.13 2.80 2.73 44.99 0.12 2.92 16 9 H 0.08 1.97 7.58 -2.39 -0.02 1.96 16 10 C -0.16 -2.89 9.48 71.98 0.68 -2.21 16 11 N -0.71 -17.51 4.52 -442.52 -2.00 -19.51 16 12 C 0.54 19.70 7.81 87.66 0.68 20.38 16 13 O -0.56 -25.48 15.53 -3.05 -0.05 -25.53 16 14 C -0.13 -5.31 6.16 71.24 0.44 -4.88 16 15 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 16 C -0.55 -31.84 9.50 67.95 0.65 -31.20 16 17 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.77 5.49 84.86 0.47 1.24 16 19 N -0.91 -56.76 13.22 21.65 0.29 -56.48 16 20 Si 1.00 44.41 29.55 68.60 2.03 46.44 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 N -0.23 -6.31 12.04 -50.00 -0.60 -6.92 16 25 N -0.10 -2.50 13.78 37.02 0.51 -1.99 16 26 N -0.35 -5.44 4.03 -355.10 -1.43 -6.87 16 27 C 0.07 0.23 11.33 127.77 1.45 1.68 16 28 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.11 0.06 7.18 -2.39 -0.02 0.04 16 30 H 0.10 1.14 6.43 -2.39 -0.02 1.12 16 31 H 0.41 9.49 7.82 -92.71 -0.73 8.77 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.41 7.97 8.60 -92.71 -0.80 7.17 16 38 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 39 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 40 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.13 -0.45 7.16 -2.39 -0.02 -0.47 16 Total: -1.00 -87.14 386.12 1.43 -85.70 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.46 Total: 20.66 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.88 Total: 4.39 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -5.75 Total: -109.08 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.11 Total: -38.68 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -87.14 1.43 -85.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583607157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.387 kcal (2) G-P(sol) polarization free energy of solvation -87.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds