Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40089 * 125.97828 * 180.17567 * 4 3 2 6 6 C 1.34777 * 119.99698 * 0.24140 * 5 4 3 7 7 O 1.21614 * 120.00180 * 359.97438 * 6 5 4 8 8 C 1.47504 * 120.00323 * 179.97438 * 6 5 4 9 9 C 1.39550 * 120.24036 * 359.72612 * 8 6 5 10 10 C 1.38200 * 120.25954 * 179.78954 * 9 8 6 11 11 C 1.37968 * 120.70886 * 0.45038 * 10 9 8 12 12 C 1.39605 * 120.11493 * 359.79596 * 11 10 9 13 13 N 1.35981 * 133.39092 * 179.97438 * 12 11 10 14 14 C 1.30738 * 109.51292 * 180.02562 * 13 12 11 15 15 O 1.35280 * 125.05369 * 180.02562 * 14 13 12 16 16 N 1.36466 * 109.89117 * 359.97438 * 14 13 12 17 17 H 0.96994 * 126.32857 * 180.02562 * 16 14 13 18 18 C 1.37856 * 107.34746 * 0.02562 * 16 14 13 19 19 N 1.31225 * 108.04889 * 0.36224 * 4 3 2 20 20 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 21 21 C 1.46494 * 125.97360 * 359.94234 * 20 2 1 22 22 C 1.50702 * 109.47377 * 90.00230 * 21 20 2 23 23 H 1.07999 * 119.99790 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00105 * 179.97438 * 22 21 20 25 25 N 1.31509 * 120.00037 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99735 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.46879 * 60.00487 * 26 24 22 28 28 H 1.48503 * 109.46659 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47119 * 300.00103 * 26 24 22 30 30 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 33 33 H 1.07998 * 126.06503 * 359.97438 * 3 2 1 34 34 H 0.96991 * 120.00302 * 180.23930 * 5 4 3 35 35 H 1.08001 * 119.86616 * 359.97438 * 9 8 6 36 36 H 1.08007 * 119.64306 * 180.24205 * 10 9 8 37 37 H 1.08001 * 119.93873 * 179.76565 * 11 10 9 38 38 H 0.96700 * 113.99909 * 269.99999 * 15 14 13 39 39 H 1.09002 * 109.47260 * 210.00203 * 21 20 2 40 40 H 1.08999 * 109.47203 * 329.99983 * 21 20 2 41 41 H 0.97005 * 120.00005 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7731 1.4744 0.0063 6 6 4.6363 2.8152 0.0136 7 8 3.5269 3.3132 0.0160 8 6 5.8323 3.6785 0.0185 9 6 7.1078 3.1124 0.0215 10 6 8.2286 3.9210 0.0218 11 6 8.1060 5.2952 0.0285 12 6 6.8409 5.8856 0.0307 13 7 6.4122 7.1760 0.0373 14 6 5.1051 7.2020 0.0370 15 8 4.3503 8.3246 0.0421 16 7 4.6154 5.9283 0.0298 17 1 3.6798 5.6724 0.0278 18 6 5.6961 5.0724 0.0259 19 7 3.6337 -0.6577 -0.0045 20 7 2.3016 -1.0910 -0.0059 21 6 1.8499 -2.4846 -0.0123 22 6 1.6939 -2.9556 -1.4353 23 1 1.9093 -2.2839 -2.2531 24 6 1.2762 -4.2441 -1.6930 25 7 1.0145 -5.0621 -0.6972 26 14 1.0822 -4.8277 -3.4570 27 1 2.3872 -4.7266 -4.1581 28 1 0.6256 -6.2407 -3.4633 29 1 0.0801 -3.9799 -4.1514 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5186 32 1 -0.3633 0.8928 -0.5090 33 1 1.9718 2.1210 -0.0004 34 1 5.6579 1.0771 0.0040 35 1 7.2194 2.0382 0.0206 36 1 9.2110 3.4722 0.0202 37 1 8.9903 5.9152 0.0324 38 1 4.1306 8.6469 0.9270 39 1 2.5849 -3.1071 0.4980 40 1 0.8917 -2.5583 0.5020 41 1 0.7202 -5.9685 -0.8786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598113361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = 82.469055 kcal Electronic energy + Delta-G solvation = -27996.867211 eV Core-core repulsion = 23879.990649 eV Total energy + Delta-G solvation = -4116.876561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.58950 -40.84010 -39.55539 -38.31131 -36.79112 -35.01531 -33.58525 -33.38681 -31.65757 -31.05040 -30.32928 -29.29815 -26.80128 -26.42759 -24.62232 -23.20263 -22.73002 -22.43864 -21.31047 -19.94923 -19.55829 -19.12582 -17.94919 -17.74382 -16.81169 -16.71857 -16.30436 -16.02657 -15.45028 -15.39181 -14.92967 -14.66421 -14.45734 -14.42499 -14.16522 -13.99748 -13.10019 -12.98472 -12.52741 -12.46110 -12.38989 -12.27753 -12.09089 -11.99672 -11.72960 -11.47623 -11.17361 -11.07932 -10.86470 -10.58658 -10.55671 -10.28892 -10.07141 -9.74593 -9.61447 -8.80686 -8.68288 -8.59066 -8.02906 -7.54669 -6.29804 -4.37874 0.12849 1.05313 1.83965 2.17477 2.51846 2.61546 2.86432 3.20458 3.24559 3.28608 3.36503 3.41667 3.72358 3.74196 4.16907 4.26899 4.42929 4.49691 4.72030 4.84147 4.94837 5.03848 5.27681 5.34535 5.48643 5.62719 5.75688 5.85593 5.92370 5.98763 6.02940 6.12471 6.29886 6.38166 6.39476 6.44877 6.63563 6.86409 6.99172 7.22313 7.32032 7.33380 7.51932 7.62296 7.83699 7.97212 8.05607 8.55771 8.69463 9.28781 10.77448 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.002276 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.592843 B =12301.839541 C =13027.377011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.289 4.289 4 C 0.261 3.739 5 N -0.621 5.621 6 C 0.569 3.431 7 O -0.527 6.527 8 C -0.122 4.122 9 C -0.058 4.058 10 C -0.132 4.132 11 C -0.033 4.033 12 C 0.047 3.953 13 N -0.484 5.484 14 C 0.453 3.547 15 O -0.441 6.441 16 N -0.583 5.583 17 H 0.436 0.564 18 C 0.113 3.887 19 N -0.317 5.317 20 N -0.315 5.315 21 C 0.258 3.742 22 C -0.538 4.538 23 H 0.064 0.936 24 C 0.067 3.933 25 N -0.891 5.891 26 Si 0.907 3.093 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.159 0.841 34 H 0.411 0.589 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.412 0.588 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 20.777 4.736 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.320 4.320 4 C 0.009 3.991 5 N -0.267 5.267 6 C 0.356 3.644 7 O -0.404 6.404 8 C -0.128 4.128 9 C -0.078 4.078 10 C -0.153 4.153 11 C -0.053 4.053 12 C -0.071 4.071 13 N -0.216 5.216 14 C 0.149 3.851 15 O -0.243 6.243 16 N -0.207 5.207 17 H 0.278 0.722 18 C 0.000 4.000 19 N -0.147 5.147 20 N -0.097 5.097 21 C 0.141 3.859 22 C -0.577 4.577 23 H 0.082 0.918 24 C -0.137 4.137 25 N -0.529 5.529 26 Si 0.733 3.267 27 H -0.200 1.200 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.176 0.824 34 H 0.248 0.752 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.270 0.730 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.034 20.545 4.192 23.245 hybrid contribution -1.257 -0.648 -0.487 1.496 sum 8.777 19.897 3.705 22.060 Atomic orbital electron populations 1.20386 0.87851 1.03930 1.02571 1.21073 0.94960 0.87109 1.00767 1.21217 0.89665 0.99771 1.21324 1.18922 0.87022 0.89625 1.03565 1.42243 1.07839 1.04782 1.71870 1.18004 0.88726 0.81194 0.76457 1.90651 1.26243 1.74062 1.49430 1.18699 0.93639 0.89173 1.11308 1.21250 0.90437 1.00361 0.95783 1.20870 0.99055 0.92499 1.02856 1.20495 0.94573 0.94436 0.95790 1.18797 0.93412 0.87948 1.06986 1.70747 1.06572 1.20249 1.24044 1.20387 0.86129 0.79598 0.99011 1.84839 1.69072 1.35658 1.34697 1.43533 1.10536 1.05378 1.61261 0.72180 1.18255 0.87586 0.90892 1.03277 1.77264 1.00047 1.08350 1.29067 1.49030 1.00899 1.07874 1.51886 1.19709 0.96018 0.71211 0.98982 1.21276 1.47111 0.98013 0.91295 0.91789 1.24924 0.94608 0.96008 0.98168 1.69906 1.44709 1.07038 1.31225 0.86409 0.78848 0.77693 0.83715 1.19956 1.20916 1.19917 0.91036 0.89821 0.90630 0.82400 0.75224 0.84313 0.84044 0.84379 0.72955 0.92925 0.92741 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.89 36.01 0.36 -1.12 16 2 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 3 C -0.29 -5.73 9.52 -39.83 -0.38 -6.11 16 4 C 0.26 5.14 8.11 -154.45 -1.25 3.89 16 5 N -0.62 -9.29 5.40 -12.08 -0.07 -9.36 16 6 C 0.57 8.11 7.73 -12.48 -0.10 8.02 16 7 O -0.53 -8.59 12.40 5.26 0.07 -8.53 16 8 C -0.12 -1.39 5.88 -104.95 -0.62 -2.01 16 9 C -0.06 -0.49 9.53 -39.11 -0.37 -0.86 16 10 C -0.13 -0.92 9.99 -39.69 -0.40 -1.32 16 11 C -0.03 -0.28 10.09 -39.17 -0.40 -0.68 16 12 C 0.05 0.53 7.22 -84.70 -0.61 -0.08 16 13 N -0.48 -5.80 11.32 -12.24 -0.14 -5.93 16 14 C 0.45 4.71 9.40 -88.86 -0.83 3.87 16 15 O -0.44 -3.26 13.63 -17.53 -0.24 -3.50 16 16 N -0.58 -6.32 6.03 -11.70 -0.07 -6.39 16 17 H 0.44 4.48 7.71 -40.82 -0.31 4.17 16 18 C 0.11 1.34 6.88 -83.65 -0.58 0.76 16 19 N -0.32 -7.10 12.59 31.43 0.40 -6.71 16 20 N -0.31 -7.29 3.59 -58.33 -0.21 -7.50 16 21 C 0.26 6.49 5.81 -5.20 -0.03 6.46 16 22 C -0.54 -14.59 9.39 -34.44 -0.32 -14.92 16 23 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -24.68 13.29 55.43 0.74 -23.95 16 26 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 29 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.16 3.00 5.91 -52.49 -0.31 2.69 16 34 H 0.41 4.84 6.85 -40.82 -0.28 4.56 16 35 H 0.14 0.84 6.39 -52.49 -0.34 0.51 16 36 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.41 0.72 9.06 45.56 0.41 1.13 16 39 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.05 1.35 7.65 -51.93 -0.40 0.96 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -34.78 358.84 -8.62 -43.40 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -3.28 Total: 8.30 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -6.19 Total: -1.07 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.65 Total: -59.83 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.17 Total: -12.03 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.78 -8.62 -43.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598113361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.868 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds