Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40089 * 125.97828 * 180.17567 * 4 3 2 6 6 C 1.34777 * 119.99698 * 0.24140 * 5 4 3 7 7 O 1.21614 * 120.00180 * 359.97438 * 6 5 4 8 8 C 1.47504 * 120.00323 * 179.97438 * 6 5 4 9 9 C 1.39550 * 120.24036 * 359.72612 * 8 6 5 10 10 C 1.38200 * 120.25954 * 179.78954 * 9 8 6 11 11 C 1.37968 * 120.70886 * 0.45038 * 10 9 8 12 12 C 1.39605 * 120.11493 * 359.79596 * 11 10 9 13 13 N 1.35981 * 133.39092 * 179.97438 * 12 11 10 14 14 C 1.30738 * 109.51292 * 180.02562 * 13 12 11 15 15 O 1.35280 * 125.05369 * 180.02562 * 14 13 12 16 16 N 1.36466 * 109.89117 * 359.97438 * 14 13 12 17 17 H 0.96994 * 126.32857 * 180.02562 * 16 14 13 18 18 C 1.37856 * 107.34746 * 0.02562 * 16 14 13 19 19 N 1.31225 * 108.04889 * 0.36224 * 4 3 2 20 20 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 21 21 C 1.46494 * 125.97360 * 359.94234 * 20 2 1 22 22 C 1.50702 * 109.47377 * 90.00230 * 21 20 2 23 23 H 1.07999 * 119.99790 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00105 * 179.97438 * 22 21 20 25 25 N 1.31509 * 120.00037 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99735 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.46879 * 60.00487 * 26 24 22 28 28 H 1.48503 * 109.46659 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47119 * 300.00103 * 26 24 22 30 30 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 33 33 H 1.07998 * 126.06503 * 359.97438 * 3 2 1 34 34 H 0.96991 * 120.00302 * 180.23930 * 5 4 3 35 35 H 1.08001 * 119.86616 * 359.97438 * 9 8 6 36 36 H 1.08007 * 119.64306 * 180.24205 * 10 9 8 37 37 H 1.08001 * 119.93873 * 179.76565 * 11 10 9 38 38 H 0.96700 * 113.99909 * 269.99999 * 15 14 13 39 39 H 1.09002 * 109.47260 * 210.00203 * 21 20 2 40 40 H 1.08999 * 109.47203 * 329.99983 * 21 20 2 41 41 H 0.97005 * 120.00005 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7731 1.4744 0.0063 6 6 4.6363 2.8152 0.0136 7 8 3.5269 3.3132 0.0160 8 6 5.8323 3.6785 0.0185 9 6 7.1078 3.1124 0.0215 10 6 8.2286 3.9210 0.0218 11 6 8.1060 5.2952 0.0285 12 6 6.8409 5.8856 0.0307 13 7 6.4122 7.1760 0.0373 14 6 5.1051 7.2020 0.0370 15 8 4.3503 8.3246 0.0421 16 7 4.6154 5.9283 0.0298 17 1 3.6798 5.6724 0.0278 18 6 5.6961 5.0724 0.0259 19 7 3.6337 -0.6577 -0.0045 20 7 2.3016 -1.0910 -0.0059 21 6 1.8499 -2.4846 -0.0123 22 6 1.6939 -2.9556 -1.4353 23 1 1.9093 -2.2839 -2.2531 24 6 1.2762 -4.2441 -1.6930 25 7 1.0145 -5.0621 -0.6972 26 14 1.0822 -4.8277 -3.4570 27 1 2.3872 -4.7266 -4.1581 28 1 0.6256 -6.2407 -3.4633 29 1 0.0801 -3.9799 -4.1514 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5186 32 1 -0.3633 0.8928 -0.5090 33 1 1.9718 2.1210 -0.0004 34 1 5.6579 1.0771 0.0040 35 1 7.2194 2.0382 0.0206 36 1 9.2110 3.4722 0.0202 37 1 8.9903 5.9152 0.0324 38 1 4.1306 8.6469 0.9270 39 1 2.5849 -3.1071 0.4980 40 1 0.8917 -2.5583 0.5020 41 1 0.7202 -5.9685 -0.8786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598113361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = 55.255857 kcal Electronic energy + Delta-G solvation = -27998.047263 eV Core-core repulsion = 23879.990649 eV Total energy + Delta-G solvation = -4118.056614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.35504 -42.33486 -40.74636 -39.03142 -37.47549 -36.42283 -35.33855 -34.32124 -33.14677 -32.67855 -31.29638 -30.02247 -28.61221 -27.91083 -25.78712 -24.67746 -23.66932 -23.26851 -22.42288 -21.35889 -20.86697 -19.89963 -18.85998 -18.70387 -18.67744 -17.70629 -17.59210 -17.11331 -16.90064 -16.59866 -16.18620 -15.81469 -15.65529 -15.43544 -15.28470 -14.96236 -14.70465 -14.33523 -13.86315 -13.67735 -13.62467 -13.56602 -13.18234 -13.10663 -12.85403 -12.69540 -12.69283 -12.67729 -12.25965 -12.16372 -11.89464 -11.61863 -11.41084 -11.40315 -10.98970 -10.74077 -9.65224 -9.52336 -9.36576 -9.12843 -8.33723 -6.51381 -0.62853 0.32912 0.89974 1.17406 1.27340 1.38133 1.39414 1.42957 1.48980 1.67368 2.19599 2.22931 2.36999 2.70037 2.77911 2.96265 3.30008 3.59514 3.83221 3.87992 4.06431 4.11279 4.12720 4.28371 4.44229 4.67008 4.71836 4.74628 4.81428 4.85537 4.94701 4.97618 5.07421 5.11526 5.24181 5.28939 5.34159 5.52413 5.69997 5.79780 5.82138 5.88142 6.18686 6.23171 6.56182 6.60373 6.61428 6.86535 7.01639 7.19671 8.72112 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.002276 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.592843 B =12301.839541 C =13027.377011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.088 3.912 3 C -0.298 4.298 4 C 0.272 3.728 5 N -0.614 5.614 6 C 0.570 3.430 7 O -0.551 6.551 8 C -0.144 4.144 9 C -0.045 4.045 10 C -0.120 4.120 11 C -0.028 4.028 12 C 0.025 3.975 13 N -0.509 5.509 14 C 0.455 3.545 15 O -0.443 6.443 16 N -0.586 5.586 17 H 0.435 0.565 18 C 0.094 3.906 19 N -0.353 5.353 20 N -0.341 5.341 21 C 0.276 3.724 22 C -0.555 4.555 23 H 0.049 0.951 24 C 0.024 3.976 25 N -0.917 5.917 26 Si 0.969 3.031 27 H -0.275 1.275 28 H -0.273 1.273 29 H -0.266 1.266 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.168 0.832 34 H 0.425 0.575 35 H 0.163 0.837 36 H 0.182 0.818 37 H 0.161 0.839 38 H 0.435 0.565 39 H 0.026 0.974 40 H 0.052 0.948 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 21.717 4.170 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C -0.328 4.328 4 C 0.018 3.982 5 N -0.263 5.263 6 C 0.360 3.640 7 O -0.429 6.429 8 C -0.150 4.150 9 C -0.065 4.065 10 C -0.140 4.140 11 C -0.048 4.048 12 C -0.093 4.093 13 N -0.241 5.241 14 C 0.150 3.850 15 O -0.248 6.248 16 N -0.211 5.211 17 H 0.277 0.723 18 C -0.020 4.020 19 N -0.183 5.183 20 N -0.124 5.124 21 C 0.157 3.843 22 C -0.593 4.593 23 H 0.067 0.933 24 C -0.177 4.177 25 N -0.555 5.555 26 Si 0.793 3.207 27 H -0.200 1.200 28 H -0.197 1.197 29 H -0.191 1.191 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.185 0.815 34 H 0.265 0.735 35 H 0.180 0.820 36 H 0.199 0.801 37 H 0.179 0.821 38 H 0.298 0.702 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.371 21.520 3.653 24.612 hybrid contribution -1.571 -0.768 -0.253 1.767 sum 9.800 20.752 3.400 23.200 Atomic orbital electron populations 1.20505 0.85386 1.04386 1.04132 1.21747 0.96668 0.86443 0.99388 1.21425 0.89868 0.99947 1.21578 1.19241 0.88593 0.89245 1.01146 1.42309 1.07268 1.04713 1.72045 1.18531 0.89513 0.80804 0.75181 1.90618 1.27574 1.74335 1.50397 1.18554 0.93438 0.88520 1.14508 1.21645 0.89610 1.01820 0.93400 1.21304 1.00224 0.91706 1.00784 1.20940 0.94293 0.95444 0.94077 1.19221 0.94365 0.87711 1.07958 1.70726 1.07293 1.20839 1.25262 1.20492 0.86146 0.80058 0.98267 1.84802 1.68559 1.34588 1.36876 1.43575 1.10452 1.05594 1.61433 0.72297 1.18501 0.88151 0.91220 1.04082 1.77182 1.00074 1.09789 1.31289 1.48813 1.01733 1.07575 1.54264 1.19251 0.94957 0.72354 0.97760 1.21403 1.47726 0.98375 0.91769 0.93250 1.25709 0.93937 0.95886 1.02167 1.69988 1.44944 1.07438 1.33130 0.85437 0.78757 0.77693 0.78806 1.20039 1.19742 1.19106 0.88839 0.91437 0.87967 0.81469 0.73516 0.81987 0.80065 0.82105 0.70236 0.95605 0.93008 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.80 9.89 71.24 0.70 -2.10 16 2 C 0.09 3.63 6.92 41.38 0.29 3.91 16 3 C -0.30 -11.80 9.52 22.11 0.21 -11.59 16 4 C 0.27 10.72 8.11 133.35 1.08 11.80 16 5 N -0.61 -17.98 5.40 -310.40 -1.68 -19.66 16 6 C 0.57 15.94 7.73 86.69 0.67 16.61 16 7 O -0.55 -17.95 12.40 -4.08 -0.05 -18.00 16 8 C -0.14 -3.10 5.88 -20.08 -0.12 -3.22 16 9 C -0.05 -0.63 9.53 22.58 0.22 -0.41 16 10 C -0.12 -1.21 9.99 22.20 0.22 -0.99 16 11 C -0.03 -0.39 10.09 22.54 0.23 -0.17 16 12 C 0.03 0.54 7.22 39.36 0.28 0.82 16 13 N -0.51 -11.82 11.32 -306.48 -3.47 -15.29 16 14 C 0.46 9.28 9.40 179.73 1.69 10.97 16 15 O -0.44 -6.22 13.63 -85.65 -1.17 -7.39 16 16 N -0.59 -12.71 6.03 -301.80 -1.82 -14.53 16 17 H 0.43 9.14 7.71 -92.71 -0.71 8.42 16 18 C 0.09 2.15 6.88 39.17 0.27 2.42 16 19 N -0.35 -16.15 12.59 -54.48 -0.69 -16.84 16 20 N -0.34 -16.23 3.59 -338.45 -1.22 -17.45 16 21 C 0.28 14.36 5.81 85.63 0.50 14.86 16 22 C -0.55 -30.73 9.39 25.60 0.24 -30.49 16 23 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 24 C 0.02 1.31 5.46 84.66 0.46 1.78 16 25 N -0.92 -51.24 13.29 21.45 0.28 -50.96 16 26 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 29 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 30 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.42 7.71 -2.39 -0.02 2.41 16 32 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 33 H 0.17 6.29 5.91 -2.91 -0.02 6.27 16 34 H 0.43 9.49 6.85 -92.71 -0.64 8.85 16 35 H 0.16 1.42 6.39 -2.91 -0.02 1.40 16 36 H 0.18 0.43 8.06 -2.91 -0.02 0.40 16 37 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.43 1.08 9.06 -74.06 -0.67 0.41 16 39 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 2.67 7.65 -2.39 -0.02 2.65 16 41 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -76.89 358.84 -1.70 -78.59 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.87 Total: 22.69 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 6.94 Total: 14.21 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -8.58 Total: -134.71 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -1.22 Total: -25.39 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -76.89 -1.70 -78.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598113361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.843 kcal (2) G-P(sol) polarization free energy of solvation -76.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds