Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34754 * 125.66191 * 2 1 4 4 C 1.40898 * 107.04212 * 179.97438 * 3 2 1 5 5 C 1.36019 * 106.73736 * 359.97438 * 4 3 2 6 6 C 1.47654 * 125.93647 * 180.02562 * 5 4 3 7 7 N 1.31595 * 126.54376 * 325.21761 * 6 5 4 8 8 N 1.39766 * 109.05246 * 180.26669 * 7 6 5 9 9 C 1.46498 * 125.13995 * 179.70582 * 8 7 6 10 10 C 1.34160 * 109.72202 * 359.70237 * 8 7 6 11 11 C 1.37970 * 107.93798 * 0.02562 * 10 8 7 12 12 C 1.47206 * 126.81296 * 180.02562 * 11 10 8 13 13 O 1.21655 * 119.99591 * 180.02562 * 12 11 10 14 14 N 1.34777 * 120.00017 * 0.02697 * 12 11 10 15 15 C 1.40555 * 119.99626 * 180.02562 * 14 12 11 16 16 C 1.40661 * 126.08478 * 0.02562 * 15 14 12 17 17 N 1.30910 * 108.38530 * 179.97438 * 16 15 14 18 18 N 1.40066 * 108.41142 * 0.02562 * 17 16 15 19 19 C 1.37322 * 126.06519 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99691 * 179.97438 * 19 18 17 21 21 C 1.38983 * 120.00619 * 359.97108 * 19 18 17 22 22 N 1.31297 * 119.99732 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46999 * 60.00457 * 23 21 19 25 25 H 1.48504 * 109.47082 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47408 * 300.00266 * 23 21 19 27 27 C 1.35687 * 126.08067 * 179.71064 * 15 14 12 28 28 O 1.34308 * 125.65792 * 180.30020 * 2 1 3 29 29 H 1.09000 * 109.46650 * 90.00253 * 1 2 3 30 30 H 1.08999 * 109.47055 * 210.00113 * 1 2 3 31 31 H 1.08993 * 109.46960 * 330.00725 * 1 2 3 32 32 H 1.08002 * 126.47495 * 359.95946 * 3 2 1 33 33 H 1.07995 * 126.63164 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.46860 * 269.99971 * 9 8 7 35 35 H 1.09003 * 109.47045 * 29.99541 * 9 8 7 36 36 H 1.09000 * 109.46998 * 149.99719 * 9 8 7 37 37 H 1.07995 * 126.02818 * 180.02562 * 10 8 7 38 38 H 0.96996 * 119.99871 * 359.97438 * 14 12 11 39 39 H 1.07998 * 125.80762 * 359.97438 * 16 15 14 40 40 H 0.96996 * 120.00186 * 179.97438 * 22 21 19 41 41 H 1.07998 * 126.24726 * 0.03941 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2927 1.0948 0.0000 4 6 3.6279 0.6450 0.0006 5 6 3.5832 -0.7145 0.0015 6 6 4.7496 -1.6199 0.0029 7 7 5.9014 -1.4148 -0.5996 8 7 6.7406 -2.5073 -0.3636 9 6 8.1056 -2.6483 -0.8765 10 6 6.1072 -3.4074 0.4035 11 6 4.8469 -2.9184 0.6797 12 6 3.8050 -3.5719 1.4886 13 8 2.7304 -3.0257 1.6526 14 7 4.0416 -4.7752 2.0476 15 6 3.0465 -5.3993 2.8196 16 6 1.7648 -4.8869 3.0902 17 7 1.1251 -5.7491 3.8392 18 7 1.9694 -6.8413 4.0762 19 6 1.6620 -7.9544 4.8194 20 1 2.3909 -8.7424 4.9384 21 6 0.4131 -8.0669 5.4186 22 7 -0.4732 -7.1091 5.2737 23 14 -0.0046 -9.5806 6.4302 24 1 0.9485 -9.6974 7.5630 25 1 -1.3876 -9.4578 6.9571 26 1 0.0930 -10.7903 5.5745 27 6 3.1493 -6.6061 3.4314 28 8 2.2900 -1.0912 -0.0057 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.9614 2.1228 -0.0006 33 1 4.5153 1.2605 0.0012 34 1 8.0798 -3.1450 -1.8463 35 1 8.5565 -1.6619 -0.9854 36 1 8.6961 -3.2428 -0.1793 37 1 6.5123 -4.3486 0.7446 38 1 4.8983 -5.2108 1.9166 39 1 1.3749 -3.9427 2.7396 40 1 -1.3450 -7.1877 5.6915 41 1 4.0089 -7.2596 3.4141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631316192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = 151.131278 kcal Electronic energy + Delta-G solvation = -28384.791426 eV Core-core repulsion = 24270.892282 eV Total energy + Delta-G solvation = -4113.899144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32540 -41.14161 -39.66747 -38.11999 -34.19074 -33.81702 -33.11520 -32.98293 -31.60686 -30.68103 -30.05852 -28.03959 -27.54071 -25.82003 -24.74973 -22.79597 -22.08822 -21.01065 -20.78853 -20.25084 -19.55685 -19.22114 -17.76218 -17.32102 -16.42501 -16.06990 -15.66753 -15.65251 -15.37012 -15.07759 -14.64097 -14.26909 -14.14848 -13.70272 -13.43899 -13.21590 -13.03277 -13.00015 -12.92035 -12.79860 -12.68127 -12.61873 -12.42194 -11.69818 -11.64482 -11.34708 -11.21159 -11.08850 -10.90755 -10.53051 -10.06084 -10.04742 -9.63568 -9.11589 -9.09408 -8.81448 -8.73334 -7.99070 -7.93644 -6.60449 -6.50501 -4.16743 1.22037 1.46678 1.95287 2.36208 2.83892 2.99398 3.07173 3.11022 3.11411 3.50546 3.70064 3.93259 3.94724 4.23464 4.30957 4.56722 4.61587 4.78328 4.86610 4.97247 5.03005 5.07226 5.09365 5.15191 5.30308 5.47628 5.53134 5.54253 5.77321 5.80366 6.02967 6.11241 6.29652 6.31669 6.51890 6.60034 6.64307 6.96886 7.04614 7.19331 7.23590 7.32866 7.46083 7.91905 8.29771 8.36975 8.71958 9.01419 9.44380 9.74360 10.45540 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.002875 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.844403 B = 9735.786751 C =11794.538403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 C -0.226 4.226 4 C -0.169 4.169 5 C 0.057 3.943 6 C 0.196 3.804 7 N -0.271 5.271 8 N -0.363 5.363 9 C 0.098 3.902 10 C 0.094 3.906 11 C -0.253 4.253 12 C 0.573 3.427 13 O -0.519 6.519 14 N -0.624 5.624 15 C -0.053 4.053 16 C -0.032 4.032 17 N -0.260 5.260 18 N -0.144 5.144 19 C -0.324 4.324 20 H 0.115 0.885 21 C 0.046 3.954 22 N -0.771 5.771 23 Si 0.934 3.066 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.086 4.086 28 O -0.128 6.128 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.188 0.812 38 H 0.391 0.609 39 H 0.177 0.823 40 H 0.275 0.725 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.465 9.387 -11.288 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.042 4.042 3 C -0.245 4.245 4 C -0.190 4.190 5 C 0.005 3.995 6 C 0.029 3.971 7 N -0.094 5.094 8 N -0.144 5.144 9 C -0.043 4.043 10 C -0.054 4.054 11 C -0.268 4.268 12 C 0.359 3.641 13 O -0.395 6.395 14 N -0.266 5.266 15 C -0.159 4.159 16 C -0.207 4.207 17 N -0.092 5.092 18 N 0.088 4.912 19 C -0.456 4.456 20 H 0.132 0.868 21 C -0.171 4.171 22 N -0.397 5.397 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.237 4.237 28 O -0.021 6.021 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.205 0.795 38 H 0.224 0.776 39 H 0.194 0.806 40 H 0.085 0.915 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.094 10.027 -11.264 19.331 hybrid contribution 1.064 -1.249 0.443 1.699 sum 13.157 8.777 -10.821 19.164 Atomic orbital electron populations 1.20352 0.85040 1.04581 1.03362 1.22638 0.94220 0.84092 1.03239 1.21412 0.92333 0.99318 1.11416 1.21682 0.98256 0.92685 1.06417 1.18372 0.81155 0.90480 1.09515 1.20074 0.90248 0.91724 0.95062 1.77400 1.01407 1.07669 1.22881 1.48067 1.13287 1.13565 1.39446 1.22006 0.77198 1.04658 1.00452 1.22986 0.92649 0.95817 0.93971 1.21488 0.95998 0.97945 1.11411 1.16895 0.86411 0.80838 0.79984 1.90720 1.24497 1.63835 1.60435 1.42287 1.15830 1.18621 1.49846 1.17234 0.92349 0.96640 1.09659 1.24134 0.92244 1.01468 1.02870 1.78246 1.15410 0.95038 1.20457 1.44519 1.06611 1.12410 1.27669 1.19791 1.01200 0.95691 1.28928 0.86780 1.25620 0.95403 0.98700 0.97339 1.70210 1.04906 1.29876 1.34734 0.85917 0.78314 0.80340 0.79682 1.19220 1.20169 1.19225 1.21222 0.93962 0.99378 1.09109 1.84246 1.14699 1.33763 1.69365 0.90177 0.89736 0.89375 0.83381 0.83404 0.90190 0.88879 0.88883 0.79473 0.77618 0.80647 0.91480 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.41 36.01 0.37 -0.48 16 2 C 0.01 0.16 7.32 -35.54 -0.26 -0.10 16 3 C -0.23 -3.02 10.78 -39.81 -0.43 -3.45 16 4 C -0.17 -2.47 10.85 -39.37 -0.43 -2.90 16 5 C 0.06 0.98 6.73 -36.54 -0.25 0.74 16 6 C 0.20 3.21 7.29 -80.68 -0.59 2.62 16 7 N -0.27 -3.82 12.51 34.50 0.43 -3.39 16 8 N -0.36 -3.80 3.95 -67.65 -0.27 -4.06 16 9 C 0.10 0.49 11.39 59.85 0.68 1.17 16 10 C 0.09 1.01 10.93 -16.63 -0.18 0.83 16 11 C -0.25 -3.99 6.32 -102.91 -0.65 -4.64 16 12 C 0.57 11.11 7.78 -12.62 -0.10 11.01 16 13 O -0.52 -11.99 11.74 -15.16 -0.18 -12.17 16 14 N -0.62 -11.50 5.46 -11.03 -0.06 -11.56 16 15 C -0.05 -1.25 6.90 -83.85 -0.58 -1.83 16 16 C -0.03 -0.85 10.85 -17.03 -0.18 -1.04 16 17 N -0.26 -7.70 10.40 30.80 0.32 -7.38 16 18 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 19 C -0.32 -8.65 10.25 -14.82 -0.15 -8.81 16 20 H 0.11 2.71 7.83 -52.49 -0.41 2.30 16 21 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 22 N -0.77 -21.78 11.81 55.49 0.66 -21.13 16 23 Si 0.93 19.08 29.55 -169.99 -5.02 14.06 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 27 C -0.09 -2.04 11.49 -16.39 -0.19 -2.23 16 28 O -0.13 -2.35 8.77 -15.79 -0.14 -2.49 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.21 8.13 -51.93 -0.42 -0.21 16 37 H 0.19 1.17 7.48 -52.49 -0.39 0.78 16 38 H 0.39 5.36 7.77 -40.82 -0.32 5.04 16 39 H 0.18 4.75 5.91 -52.49 -0.31 4.44 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.14 2.81 8.06 -52.49 -0.42 2.38 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -38.32 364.37 -6.21 -44.52 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.37 Total: 10.15 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.02 Total: -7.99 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 1.04 Total: -51.57 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.32 Total: -14.66 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.32 -6.21 -44.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631316192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.653 kcal (2) G-P(sol) polarization free energy of solvation -38.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds