Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34754 * 125.66191 * 2 1 4 4 C 1.40898 * 107.04212 * 179.97438 * 3 2 1 5 5 C 1.36019 * 106.73736 * 359.97438 * 4 3 2 6 6 C 1.47654 * 125.93647 * 180.02562 * 5 4 3 7 7 N 1.31595 * 126.54376 * 325.21761 * 6 5 4 8 8 N 1.39766 * 109.05246 * 180.26669 * 7 6 5 9 9 C 1.46498 * 125.13995 * 179.70582 * 8 7 6 10 10 C 1.34160 * 109.72202 * 359.70237 * 8 7 6 11 11 C 1.37970 * 107.93798 * 0.02562 * 10 8 7 12 12 C 1.47206 * 126.81296 * 180.02562 * 11 10 8 13 13 O 1.21655 * 119.99591 * 180.02562 * 12 11 10 14 14 N 1.34777 * 120.00017 * 0.02697 * 12 11 10 15 15 C 1.40555 * 119.99626 * 180.02562 * 14 12 11 16 16 C 1.40661 * 126.08478 * 0.02562 * 15 14 12 17 17 N 1.30910 * 108.38530 * 179.97438 * 16 15 14 18 18 N 1.40066 * 108.41142 * 0.02562 * 17 16 15 19 19 C 1.37322 * 126.06519 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99691 * 179.97438 * 19 18 17 21 21 C 1.38983 * 120.00619 * 359.97108 * 19 18 17 22 22 N 1.31297 * 119.99732 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46999 * 60.00457 * 23 21 19 25 25 H 1.48504 * 109.47082 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47408 * 300.00266 * 23 21 19 27 27 C 1.35687 * 126.08067 * 179.71064 * 15 14 12 28 28 O 1.34308 * 125.65792 * 180.30020 * 2 1 3 29 29 H 1.09000 * 109.46650 * 90.00253 * 1 2 3 30 30 H 1.08999 * 109.47055 * 210.00113 * 1 2 3 31 31 H 1.08993 * 109.46960 * 330.00725 * 1 2 3 32 32 H 1.08002 * 126.47495 * 359.95946 * 3 2 1 33 33 H 1.07995 * 126.63164 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.46860 * 269.99971 * 9 8 7 35 35 H 1.09003 * 109.47045 * 29.99541 * 9 8 7 36 36 H 1.09000 * 109.46998 * 149.99719 * 9 8 7 37 37 H 1.07995 * 126.02818 * 180.02562 * 10 8 7 38 38 H 0.96996 * 119.99871 * 359.97438 * 14 12 11 39 39 H 1.07998 * 125.80762 * 359.97438 * 16 15 14 40 40 H 0.96996 * 120.00186 * 179.97438 * 22 21 19 41 41 H 1.07998 * 126.24726 * 0.03941 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2927 1.0948 0.0000 4 6 3.6279 0.6450 0.0006 5 6 3.5832 -0.7145 0.0015 6 6 4.7496 -1.6199 0.0029 7 7 5.9014 -1.4148 -0.5996 8 7 6.7406 -2.5073 -0.3636 9 6 8.1056 -2.6483 -0.8765 10 6 6.1072 -3.4074 0.4035 11 6 4.8469 -2.9184 0.6797 12 6 3.8050 -3.5719 1.4886 13 8 2.7304 -3.0257 1.6526 14 7 4.0416 -4.7752 2.0476 15 6 3.0465 -5.3993 2.8196 16 6 1.7648 -4.8869 3.0902 17 7 1.1251 -5.7491 3.8392 18 7 1.9694 -6.8413 4.0762 19 6 1.6620 -7.9544 4.8194 20 1 2.3909 -8.7424 4.9384 21 6 0.4131 -8.0669 5.4186 22 7 -0.4732 -7.1091 5.2737 23 14 -0.0046 -9.5806 6.4302 24 1 0.9485 -9.6974 7.5630 25 1 -1.3876 -9.4578 6.9571 26 1 0.0930 -10.7903 5.5745 27 6 3.1493 -6.6061 3.4314 28 8 2.2900 -1.0912 -0.0057 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.9614 2.1228 -0.0006 33 1 4.5153 1.2605 0.0012 34 1 8.0798 -3.1450 -1.8463 35 1 8.5565 -1.6619 -0.9854 36 1 8.6961 -3.2428 -0.1793 37 1 6.5123 -4.3486 0.7446 38 1 4.8983 -5.2108 1.9166 39 1 1.3749 -3.9427 2.7396 40 1 -1.3450 -7.1877 5.6915 41 1 4.0089 -7.2596 3.4141 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631316192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = 124.267898 kcal Electronic energy + Delta-G solvation = -28385.956310 eV Core-core repulsion = 24270.892282 eV Total energy + Delta-G solvation = -4115.064027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.46963 -42.17594 -41.51155 -39.74060 -35.86764 -34.95378 -34.77652 -34.10241 -32.61193 -32.25194 -31.61071 -29.45837 -28.73670 -27.06812 -26.37992 -24.06190 -23.12558 -22.77438 -22.01455 -21.66241 -20.95247 -20.71598 -19.22943 -18.83107 -17.61326 -17.36496 -17.18749 -16.73952 -16.65773 -16.59540 -15.80113 -15.79181 -15.58053 -15.05543 -14.92890 -14.74315 -14.55431 -14.00667 -13.85116 -13.73489 -13.57529 -13.47903 -13.41991 -13.37122 -13.23287 -12.84293 -12.83199 -12.70136 -12.13589 -12.09059 -11.77330 -11.05147 -10.95333 -10.80523 -10.69819 -10.64925 -10.05896 -9.86846 -9.04049 -8.44182 -8.43164 -6.19935 0.09695 0.46490 1.07774 1.27152 1.35616 1.41309 1.57845 1.71326 1.81350 2.04062 2.11940 2.24273 2.38006 2.77663 2.97548 3.13166 3.34105 3.44184 3.88118 3.96888 4.08415 4.23649 4.32046 4.46513 4.49381 4.50825 4.58550 4.64333 4.69025 4.73114 4.76823 4.81233 5.00172 5.03676 5.07608 5.16422 5.26296 5.33651 5.53872 5.62471 5.81726 5.99987 6.15601 6.36540 6.39033 6.77788 6.86817 7.49064 7.54124 7.73763 8.56208 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.002875 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.844403 B = 9735.786751 C =11794.538403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.015 4.015 3 C -0.220 4.220 4 C -0.169 4.169 5 C 0.021 3.979 6 C 0.172 3.828 7 N -0.285 5.285 8 N -0.349 5.349 9 C 0.083 3.917 10 C 0.135 3.865 11 C -0.300 4.300 12 C 0.571 3.429 13 O -0.566 6.566 14 N -0.612 5.612 15 C -0.038 4.038 16 C -0.061 4.061 17 N -0.310 5.310 18 N -0.169 5.169 19 C -0.355 4.355 20 H 0.142 0.858 21 C -0.008 4.008 22 N -0.827 5.827 23 Si 1.020 2.980 24 H -0.253 1.253 25 H -0.280 1.280 26 H -0.253 1.253 27 C -0.079 4.079 28 O -0.166 6.166 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.183 0.817 33 H 0.167 0.833 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.242 0.758 38 H 0.418 0.582 39 H 0.162 0.838 40 H 0.275 0.725 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.094 8.063 -11.761 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.067 4.067 3 C -0.238 4.238 4 C -0.190 4.190 5 C -0.031 4.031 6 C 0.006 3.994 7 N -0.108 5.108 8 N -0.128 5.128 9 C -0.055 4.055 10 C -0.016 4.016 11 C -0.316 4.316 12 C 0.360 3.640 13 O -0.445 6.445 14 N -0.257 5.257 15 C -0.144 4.144 16 C -0.236 4.236 17 N -0.143 5.143 18 N 0.061 4.939 19 C -0.485 4.485 20 H 0.160 0.840 21 C -0.219 4.219 22 N -0.455 5.455 23 Si 0.838 3.162 24 H -0.177 1.177 25 H -0.205 1.205 26 H -0.177 1.177 27 C -0.229 4.229 28 O -0.060 6.060 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.200 0.800 33 H 0.184 0.816 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.258 0.742 38 H 0.255 0.745 39 H 0.179 0.821 40 H 0.085 0.915 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 15.820 8.727 -11.791 21.575 hybrid contribution 0.158 -0.720 0.425 0.851 sum 15.978 8.007 -11.366 21.180 Atomic orbital electron populations 1.20506 0.83043 1.04802 1.04730 1.23444 0.95690 0.84030 1.03510 1.21813 0.91554 1.00444 1.10022 1.22024 0.99498 0.92117 1.05386 1.18939 0.81210 0.91912 1.11019 1.20247 0.90775 0.92310 0.96070 1.77344 1.01126 1.09419 1.22904 1.48601 1.14348 1.12102 1.37771 1.22581 0.74435 1.06098 1.02367 1.23621 0.90367 0.96496 0.91110 1.21178 0.97456 0.98905 1.14030 1.17498 0.86625 0.80525 0.79370 1.90703 1.26826 1.64985 1.61969 1.42106 1.15916 1.18505 1.49161 1.17300 0.92019 0.96305 1.08820 1.24110 0.94342 1.01235 1.03914 1.78144 1.17489 0.96551 1.22082 1.44829 1.07605 1.12488 1.28936 1.20587 1.02490 0.96193 1.29279 0.84031 1.26893 0.94811 1.02112 0.98104 1.70410 1.05575 1.32828 1.36666 0.84651 0.77836 0.75729 0.77961 1.17667 1.20479 1.17675 1.21984 0.94055 0.99644 1.07231 1.84215 1.15796 1.35700 1.70300 0.88167 0.91928 0.86608 0.80005 0.81560 0.88364 0.88322 0.84994 0.74184 0.74509 0.82131 0.91513 0.79102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 10.41 71.24 0.74 -1.00 16 2 C -0.01 -0.46 7.32 24.89 0.18 -0.28 16 3 C -0.22 -5.90 10.78 22.12 0.24 -5.67 16 4 C -0.17 -5.05 10.85 22.41 0.24 -4.80 16 5 C 0.02 0.76 6.73 24.24 0.16 0.92 16 6 C 0.17 5.72 7.29 43.90 0.32 6.04 16 7 N -0.28 -7.70 12.51 -44.77 -0.56 -8.26 16 8 N -0.35 -6.10 3.95 -367.93 -1.45 -7.56 16 9 C 0.08 0.43 11.39 127.77 1.46 1.89 16 10 C 0.13 2.43 10.93 84.27 0.92 3.35 16 11 C -0.30 -9.31 6.32 -18.76 -0.12 -9.43 16 12 C 0.57 22.63 7.78 86.60 0.67 23.30 16 13 O -0.57 -27.99 11.74 15.29 0.18 -27.81 16 14 N -0.61 -21.99 5.46 -307.03 -1.68 -23.66 16 15 C -0.04 -1.81 6.90 37.74 0.26 -1.55 16 16 C -0.06 -3.48 10.85 85.42 0.93 -2.55 16 17 N -0.31 -19.31 10.40 -56.46 -0.59 -19.90 16 18 N -0.17 -9.55 3.74 -190.00 -0.71 -10.26 16 19 C -0.35 -18.95 10.25 84.01 0.86 -18.09 16 20 H 0.14 6.47 7.83 -2.91 -0.02 6.45 16 21 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 22 N -0.83 -48.71 11.81 21.66 0.26 -48.46 16 23 Si 1.02 38.96 29.55 68.60 2.03 40.99 16 24 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 25 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 27 C -0.08 -3.67 11.49 83.37 0.96 -2.71 16 28 O -0.17 -6.58 8.77 13.04 0.11 -6.47 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.17 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.10 0.26 8.14 -2.39 -0.02 0.25 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.13 -0.24 8.13 -2.39 -0.02 -0.26 16 37 H 0.24 1.49 7.48 -2.91 -0.02 1.47 16 38 H 0.42 10.08 7.77 -92.71 -0.72 9.36 16 39 H 0.16 9.52 5.91 -2.91 -0.02 9.50 16 40 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.19 6.77 8.06 -2.91 -0.02 6.74 16 Total: -1.00 -93.53 364.37 6.27 -87.27 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.38 Total: 34.64 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 8.29 Total: -10.53 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -4.73 Total: -118.10 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: 0.29 Total: -34.28 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -93.53 6.27 -87.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631316192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.536 kcal (2) G-P(sol) polarization free energy of solvation -93.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds