Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30297 * 126.34378 * 2 1 4 4 N 1.28527 * 110.07934 * 179.76704 * 3 2 1 5 5 C 1.31287 * 109.85777 * 0.38632 * 4 3 2 6 6 S 1.76191 * 126.48673 * 179.88371 * 5 4 3 7 7 C 1.81007 * 100.00113 * 359.68917 * 6 5 4 8 8 H 1.08997 * 109.46742 * 305.00495 * 7 6 5 9 9 C 1.53002 * 109.46849 * 64.99732 * 7 6 5 10 10 C 1.50696 * 109.47471 * 184.99805 * 7 6 5 11 11 O 1.21280 * 120.00095 * 340.00421 * 10 7 6 12 12 N 1.34771 * 119.99966 * 159.99972 * 10 7 6 13 13 C 1.46496 * 120.00157 * 359.97438 * 12 10 7 14 14 C 1.46506 * 120.00084 * 180.02562 * 12 10 7 15 15 C 1.50699 * 109.46928 * 270.00021 * 14 12 10 16 16 H 1.08003 * 119.99963 * 0.02562 * 15 14 12 17 17 C 1.37873 * 119.99865 * 179.97438 * 15 14 12 18 18 N 1.31514 * 120.00518 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99987 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47174 * 120.00320 * 19 17 15 22 22 H 1.48497 * 109.47378 * 240.00235 * 19 17 15 23 23 N 1.36538 * 107.02696 * 359.62335 * 5 4 3 24 24 C 1.46499 * 127.14147 * 180.22359 * 23 5 4 25 25 C 1.50700 * 109.47199 * 90.02206 * 24 23 5 26 26 N 1.34782 * 120.00136 * 179.97438 * 25 24 23 27 27 O 1.21283 * 119.99646 * 0.02562 * 25 24 23 28 28 H 1.09001 * 109.47324 * 270.00600 * 1 2 3 29 29 H 1.09004 * 109.47226 * 29.99552 * 1 2 3 30 30 H 1.08993 * 109.47458 * 149.99908 * 1 2 3 31 31 H 1.09000 * 109.46872 * 180.02562 * 9 7 6 32 32 H 1.09002 * 109.47377 * 300.00294 * 9 7 6 33 33 H 1.08994 * 109.47069 * 60.00359 * 9 7 6 34 34 H 1.08995 * 109.47445 * 269.99904 * 13 12 10 35 35 H 1.09001 * 109.47057 * 30.00532 * 13 12 10 36 36 H 1.08999 * 109.47333 * 150.00092 * 13 12 10 37 37 H 1.09004 * 109.47073 * 29.99849 * 14 12 10 38 38 H 1.09000 * 109.47212 * 149.99932 * 14 12 10 39 39 H 0.96992 * 120.00316 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.47690 * 210.02565 * 24 23 5 41 41 H 1.09002 * 109.47352 * 330.02372 * 24 23 5 42 42 H 0.96994 * 120.00050 * 0.02562 * 26 25 24 43 43 H 0.96997 * 119.99415 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5130 0.6895 0.0049 5 6 3.5953 -0.6207 0.0000 6 16 5.0747 -1.5776 0.0009 7 6 6.3067 -0.2515 0.0003 8 1 6.1223 0.4154 -0.8419 9 6 6.2069 0.5379 1.3071 10 6 7.6856 -0.8468 -0.1228 11 8 7.8702 -2.0123 0.1572 12 7 8.7137 -0.0841 -0.5443 13 6 8.4907 1.3235 -0.8832 14 6 10.0542 -0.6630 -0.6646 15 6 10.7927 -0.4948 0.6383 16 1 10.3115 -0.0060 1.4725 17 6 12.0822 -0.9659 0.7655 18 7 12.6680 -1.5616 -0.2502 19 14 12.9979 -0.7568 2.3802 20 1 12.1245 -0.0591 3.3578 21 1 13.3706 -2.0914 2.9143 22 1 14.2264 0.0458 2.1523 23 7 2.3174 -1.1016 0.0000 24 6 1.9008 -2.5061 0.0001 25 6 1.7575 -2.9876 1.4209 26 7 1.3801 -4.2578 1.6672 27 8 1.9808 -2.2317 2.3427 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 6.9485 1.3367 1.3066 32 1 5.2095 0.9686 1.3963 33 1 6.3913 -0.1289 2.1494 34 1 8.2343 1.4068 -1.9393 35 1 7.6739 1.7178 -0.2787 36 1 9.3982 1.8935 -0.6838 37 1 9.9719 -1.7239 -0.9013 38 1 10.5996 -0.1546 -1.4596 39 1 13.5752 -1.8926 -0.1608 40 1 0.9444 -2.6016 -0.5142 41 1 2.6509 -3.1076 -0.5134 42 1 1.2011 -4.8622 0.9300 43 1 1.2882 -4.5677 2.5817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649696244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = 17.147949 kcal Electronic energy + Delta-G solvation = -27472.053825 eV Core-core repulsion = 23487.788679 eV Total energy + Delta-G solvation = -3984.265146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.05138 -39.90150 -39.17874 -35.19988 -34.92774 -34.26095 -33.34078 -32.58239 -32.11506 -28.90639 -27.96380 -27.63859 -26.02042 -24.31816 -23.13310 -22.47713 -22.04282 -20.87052 -19.03225 -18.29631 -17.88007 -17.26379 -16.63768 -16.53259 -16.28249 -15.99146 -15.70567 -15.36046 -14.69969 -14.58602 -14.29148 -14.19309 -13.94723 -13.56113 -13.28453 -13.07447 -12.90699 -12.87179 -12.31344 -12.11700 -12.00857 -11.74722 -11.70653 -11.39058 -11.20400 -11.16185 -10.87509 -10.76647 -10.60201 -10.28305 -10.26160 -10.17942 -10.11772 -9.85918 -9.62573 -9.05668 -8.44620 -7.74133 -7.59680 -6.05469 -4.10134 0.96014 1.42758 1.97063 1.99981 2.17155 2.70130 2.95299 3.23939 3.30553 3.38314 3.43607 3.87431 3.98879 4.06548 4.21236 4.32697 4.44320 4.58060 4.88963 5.06296 5.07239 5.16282 5.26256 5.29907 5.37948 5.56217 5.61529 5.76736 5.90019 5.92971 6.01578 6.18064 6.22608 6.42677 6.44011 6.69192 6.97340 7.38614 7.46699 7.63026 7.90523 8.20513 8.28105 8.53102 8.80934 8.98095 9.55019 11.02775 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.002737 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.184776 B =10227.680207 C =10932.416874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.186 3.814 3 N -0.283 5.283 4 N -0.290 5.290 5 C 0.164 3.836 6 S 0.062 5.938 7 C -0.100 4.100 8 H 0.119 0.881 9 C -0.144 4.144 10 C 0.526 3.474 11 O -0.529 6.529 12 N -0.590 5.590 13 C 0.073 3.927 14 C 0.245 3.755 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.453 5.453 24 C 0.085 3.915 25 C 0.502 3.498 26 N -0.848 5.848 27 O -0.514 6.514 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.036 0.964 39 H 0.263 0.737 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.404 0.596 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.713 -2.902 -2.924 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.084 4.084 3 N -0.122 5.122 4 N -0.133 5.133 5 C -0.211 4.211 6 S 0.290 5.710 7 C -0.233 4.233 8 H 0.137 0.863 9 C -0.203 4.203 10 C 0.309 3.691 11 O -0.407 6.407 12 N -0.321 5.321 13 C -0.071 4.071 14 C 0.126 3.874 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.148 5.148 24 C -0.043 4.043 25 C 0.283 3.717 26 N -0.414 5.414 27 O -0.387 6.387 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.233 0.767 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -26.624 -2.653 -2.379 26.861 hybrid contribution -0.059 -0.362 0.853 0.929 sum -26.682 -3.014 -1.525 26.895 Atomic orbital electron populations 1.20204 0.83731 1.04269 1.04095 1.24986 0.96692 0.82067 1.04616 1.73923 0.96567 1.23671 1.18034 1.74650 1.11800 1.06328 1.20516 1.27208 0.91174 0.95866 1.06818 1.85950 0.87539 1.05504 1.91963 1.23648 0.95049 0.99417 1.05204 0.86287 1.22060 1.04335 1.00159 0.93768 1.19332 0.84390 0.86604 0.78735 1.90704 1.83948 1.16441 1.49560 1.48043 1.10340 1.10197 1.63538 1.21853 1.02740 0.83021 0.99494 1.19379 0.75254 0.95385 0.97333 1.21463 0.98432 1.38307 0.98320 0.92262 1.24930 0.97388 0.94900 0.96855 1.69937 1.13980 1.38964 1.30503 0.86436 0.79498 0.77918 0.83561 1.19722 1.20869 1.20935 1.45770 1.05222 1.06757 1.57036 1.21706 1.05352 0.80773 0.96499 1.20589 0.77043 0.82838 0.91226 1.43697 1.72313 1.12441 1.12922 1.90879 1.47738 1.54597 1.45515 0.89539 0.88455 0.90743 0.90503 0.89798 0.91183 0.93344 0.91686 0.90299 0.93657 0.94592 0.92737 0.85180 0.85158 0.76741 0.75905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.25 36.00 0.37 -0.04 16 2 C 0.19 2.21 8.07 -154.00 -1.24 0.97 16 3 N -0.28 -4.39 12.17 32.99 0.40 -3.99 16 4 N -0.29 -4.80 9.73 30.68 0.30 -4.50 16 5 C 0.16 2.44 7.76 -88.34 -0.69 1.76 16 6 S 0.06 0.98 20.50 -107.50 -2.20 -1.23 16 7 C -0.10 -1.71 1.86 -27.88 -0.05 -1.76 16 8 H 0.12 1.85 7.21 -51.92 -0.37 1.47 16 9 C -0.14 -2.37 8.73 37.16 0.32 -2.04 16 10 C 0.53 11.22 6.85 -10.99 -0.08 11.14 16 11 O -0.53 -13.31 15.62 5.56 0.09 -13.23 16 12 N -0.59 -12.70 2.86 -182.96 -0.52 -13.22 16 13 C 0.07 1.20 9.88 59.84 0.59 1.79 16 14 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 15 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 16 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 19 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 N -0.45 -5.27 2.30 -114.82 -0.26 -5.54 16 24 C 0.08 0.57 6.36 -5.19 -0.03 0.53 16 25 C 0.50 4.24 8.17 -10.98 -0.09 4.15 16 26 N -0.85 -3.31 8.87 31.22 0.28 -3.04 16 27 O -0.51 -7.30 17.27 5.55 0.10 -7.20 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.25 7.27 -51.93 -0.38 -0.13 16 31 H 0.08 1.18 6.33 -51.93 -0.33 0.85 16 32 H 0.08 1.37 5.90 -51.93 -0.31 1.07 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.93 4.76 -51.93 -0.25 0.68 16 36 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 37 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 38 H 0.04 0.94 8.07 -51.93 -0.42 0.53 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.13 0.28 7.25 -51.93 -0.38 -0.10 16 41 H 0.13 0.70 7.86 -51.93 -0.41 0.29 16 42 H 0.40 0.08 8.83 -40.82 -0.36 -0.28 16 43 H 0.41 1.51 8.93 -40.82 -0.36 1.14 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -40.63 378.01 -7.36 -47.99 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.60 Total: -2.16 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.34 Total: 9.25 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.93 Total: -56.15 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: 0.18 Total: -20.43 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.20 Total: -1.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.63 -7.36 -47.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649696244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.136 kcal (2) G-P(sol) polarization free energy of solvation -40.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds