Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30297 * 126.34378 * 2 1 4 4 N 1.28527 * 110.07934 * 179.76704 * 3 2 1 5 5 C 1.31287 * 109.85777 * 0.38632 * 4 3 2 6 6 S 1.76191 * 126.48673 * 179.88371 * 5 4 3 7 7 C 1.81007 * 100.00113 * 359.68917 * 6 5 4 8 8 H 1.08997 * 109.46742 * 305.00495 * 7 6 5 9 9 C 1.53002 * 109.46849 * 64.99732 * 7 6 5 10 10 C 1.50696 * 109.47471 * 184.99805 * 7 6 5 11 11 O 1.21280 * 120.00095 * 340.00421 * 10 7 6 12 12 N 1.34771 * 119.99966 * 159.99972 * 10 7 6 13 13 C 1.46496 * 120.00157 * 359.97438 * 12 10 7 14 14 C 1.46506 * 120.00084 * 180.02562 * 12 10 7 15 15 C 1.50699 * 109.46928 * 270.00021 * 14 12 10 16 16 H 1.08003 * 119.99963 * 0.02562 * 15 14 12 17 17 C 1.37873 * 119.99865 * 179.97438 * 15 14 12 18 18 N 1.31514 * 120.00518 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99987 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47174 * 120.00320 * 19 17 15 22 22 H 1.48497 * 109.47378 * 240.00235 * 19 17 15 23 23 N 1.36538 * 107.02696 * 359.62335 * 5 4 3 24 24 C 1.46499 * 127.14147 * 180.22359 * 23 5 4 25 25 C 1.50700 * 109.47199 * 90.02206 * 24 23 5 26 26 N 1.34782 * 120.00136 * 179.97438 * 25 24 23 27 27 O 1.21283 * 119.99646 * 0.02562 * 25 24 23 28 28 H 1.09001 * 109.47324 * 270.00600 * 1 2 3 29 29 H 1.09004 * 109.47226 * 29.99552 * 1 2 3 30 30 H 1.08993 * 109.47458 * 149.99908 * 1 2 3 31 31 H 1.09000 * 109.46872 * 180.02562 * 9 7 6 32 32 H 1.09002 * 109.47377 * 300.00294 * 9 7 6 33 33 H 1.08994 * 109.47069 * 60.00359 * 9 7 6 34 34 H 1.08995 * 109.47445 * 269.99904 * 13 12 10 35 35 H 1.09001 * 109.47057 * 30.00532 * 13 12 10 36 36 H 1.08999 * 109.47333 * 150.00092 * 13 12 10 37 37 H 1.09004 * 109.47073 * 29.99849 * 14 12 10 38 38 H 1.09000 * 109.47212 * 149.99932 * 14 12 10 39 39 H 0.96992 * 120.00316 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.47690 * 210.02565 * 24 23 5 41 41 H 1.09002 * 109.47352 * 330.02372 * 24 23 5 42 42 H 0.96994 * 120.00050 * 0.02562 * 26 25 24 43 43 H 0.96997 * 119.99415 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5130 0.6895 0.0049 5 6 3.5953 -0.6207 0.0000 6 16 5.0747 -1.5776 0.0009 7 6 6.3067 -0.2515 0.0003 8 1 6.1223 0.4154 -0.8419 9 6 6.2069 0.5379 1.3071 10 6 7.6856 -0.8468 -0.1228 11 8 7.8702 -2.0123 0.1572 12 7 8.7137 -0.0841 -0.5443 13 6 8.4907 1.3235 -0.8832 14 6 10.0542 -0.6630 -0.6646 15 6 10.7927 -0.4948 0.6383 16 1 10.3115 -0.0060 1.4725 17 6 12.0822 -0.9659 0.7655 18 7 12.6680 -1.5616 -0.2502 19 14 12.9979 -0.7568 2.3802 20 1 12.1245 -0.0591 3.3578 21 1 13.3706 -2.0914 2.9143 22 1 14.2264 0.0458 2.1523 23 7 2.3174 -1.1016 0.0000 24 6 1.9008 -2.5061 0.0001 25 6 1.7575 -2.9876 1.4209 26 7 1.3801 -4.2578 1.6672 27 8 1.9808 -2.2317 2.3427 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 6.9485 1.3367 1.3066 32 1 5.2095 0.9686 1.3963 33 1 6.3913 -0.1289 2.1494 34 1 8.2343 1.4068 -1.9393 35 1 7.6739 1.7178 -0.2787 36 1 9.3982 1.8935 -0.6838 37 1 9.9719 -1.7239 -0.9013 38 1 10.5996 -0.1546 -1.4596 39 1 13.5752 -1.8926 -0.1608 40 1 0.9444 -2.6016 -0.5142 41 1 2.6509 -3.1076 -0.5134 42 1 1.2011 -4.8622 0.9300 43 1 1.2882 -4.5677 2.5817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649696244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = -13.827541 kcal Electronic energy + Delta-G solvation = -27473.397023 eV Core-core repulsion = 23487.788679 eV Total energy + Delta-G solvation = -3985.608344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.00729 -40.90522 -40.58074 -36.74177 -36.06476 -35.09162 -34.82533 -34.10156 -33.25291 -29.80377 -29.57634 -28.57141 -27.58104 -26.03147 -24.38558 -24.03785 -22.81574 -21.66115 -20.43745 -19.22779 -18.70196 -18.62328 -18.24069 -18.12940 -17.12229 -16.95661 -16.86466 -16.37218 -16.34927 -16.27840 -15.62106 -15.06037 -14.93528 -14.73269 -14.65552 -14.12135 -13.97837 -13.72126 -13.61212 -13.52691 -13.36399 -13.30257 -13.08453 -13.06838 -12.80909 -12.56780 -12.49565 -12.23356 -12.06177 -11.89236 -11.70142 -11.28644 -11.13649 -10.85890 -10.79088 -10.75126 -10.65491 -9.54207 -8.78587 -8.24111 -6.38109 -0.20658 0.49105 0.74409 1.36175 1.37568 1.38230 1.40822 1.49518 1.58236 1.68475 2.20806 2.39674 2.42022 3.06088 3.33714 3.38844 3.51830 3.69060 3.76719 3.87516 3.89508 3.99938 4.27967 4.34408 4.55109 4.61038 4.64954 4.65639 4.76330 4.85201 4.91936 4.95621 4.99715 5.12325 5.19469 5.50452 5.63746 5.76415 5.78147 6.02942 6.30217 6.53815 6.70478 7.14179 7.17732 7.34130 7.51633 8.83557 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.002737 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.184776 B =10227.680207 C =10932.416874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.200 3.800 3 N -0.329 5.329 4 N -0.316 5.316 5 C 0.148 3.852 6 S 0.058 5.942 7 C -0.089 4.089 8 H 0.137 0.863 9 C -0.135 4.135 10 C 0.522 3.478 11 O -0.576 6.576 12 N -0.595 5.595 13 C 0.068 3.932 14 C 0.260 3.740 15 C -0.543 4.543 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.966 3.034 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.268 1.268 23 N -0.449 5.449 24 C 0.075 3.925 25 C 0.500 3.500 26 N -0.823 5.823 27 O -0.581 6.581 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.005 0.995 38 H 0.032 0.968 39 H 0.268 0.732 40 H 0.185 0.815 41 H 0.145 0.855 42 H 0.424 0.576 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.063 -2.948 -3.091 30.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.070 4.070 3 N -0.168 5.168 4 N -0.159 5.159 5 C -0.228 4.228 6 S 0.286 5.714 7 C -0.222 4.222 8 H 0.155 0.845 9 C -0.194 4.194 10 C 0.307 3.693 11 O -0.456 6.456 12 N -0.326 5.326 13 C -0.074 4.074 14 C 0.139 3.861 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.193 1.193 23 N -0.143 5.143 24 C -0.051 4.051 25 C 0.282 3.718 26 N -0.389 5.389 27 O -0.460 6.460 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.023 0.977 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.202 0.798 41 H 0.163 0.837 42 H 0.257 0.743 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -29.025 -2.728 -2.588 29.267 hybrid contribution 0.521 -0.437 0.863 1.098 sum -28.504 -3.165 -1.725 28.731 Atomic orbital electron populations 1.20516 0.79886 1.06828 1.05088 1.25952 0.98522 0.81298 1.01233 1.73841 0.96663 1.25657 1.20667 1.74515 1.12949 1.07301 1.21162 1.26951 0.92005 0.95676 1.08142 1.85846 0.87878 1.05033 1.92633 1.23432 0.92726 0.99894 1.06153 0.84479 1.21981 1.04733 0.99918 0.92791 1.19964 0.85815 0.86015 0.77476 1.90670 1.85003 1.18556 1.51421 1.48027 1.08845 1.12237 1.63449 1.22128 1.03616 0.79966 1.01706 1.18881 0.77559 0.93285 0.96403 1.21706 0.99039 1.38511 0.98899 0.92880 1.25804 0.98280 0.94389 1.00399 1.70040 1.14523 1.39549 1.32494 0.85397 0.78482 0.77982 0.79136 1.19341 1.20688 1.19332 1.45991 1.03898 1.08632 1.55759 1.22240 1.08485 0.78316 0.96038 1.20893 0.76243 0.83409 0.91206 1.43548 1.69985 1.11292 1.14073 1.90862 1.51165 1.56574 1.47375 0.89081 0.87436 0.86691 0.89486 0.89539 0.92760 0.90599 0.89316 0.90453 0.97724 0.95046 0.92315 0.79777 0.83735 0.74295 0.75526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.25 71.23 0.73 0.12 16 2 C 0.20 4.37 8.07 137.63 1.11 5.48 16 3 N -0.33 -10.01 12.17 -49.53 -0.60 -10.61 16 4 N -0.32 -10.38 9.73 -56.86 -0.55 -10.94 16 5 C 0.15 4.34 7.76 179.55 1.39 5.74 16 6 S 0.06 1.83 20.50 -56.49 -1.16 0.68 16 7 C -0.09 -3.05 1.86 29.85 0.06 -2.99 16 8 H 0.14 4.14 7.21 -2.40 -0.02 4.12 16 9 C -0.14 -4.44 8.73 71.98 0.63 -3.81 16 10 C 0.52 22.73 6.85 87.66 0.60 23.33 16 11 O -0.58 -30.13 15.62 -3.03 -0.05 -30.17 16 12 N -0.60 -26.00 2.86 -851.14 -2.43 -28.43 16 13 C 0.07 2.16 9.88 127.77 1.26 3.42 16 14 C 0.26 14.07 5.16 85.63 0.44 14.51 16 15 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 16 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 17 C 0.01 0.61 5.46 84.65 0.46 1.07 16 18 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 19 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 N -0.45 -9.63 2.30 -517.18 -1.19 -10.82 16 24 C 0.07 0.77 6.36 85.63 0.55 1.32 16 25 C 0.50 7.48 8.17 87.66 0.72 8.19 16 26 N -0.82 -4.35 8.87 -173.52 -1.54 -5.89 16 27 O -0.58 -16.28 17.27 -3.04 -0.05 -16.33 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.11 0.15 7.27 -2.39 -0.02 0.14 16 31 H 0.09 2.62 6.33 -2.39 -0.02 2.60 16 32 H 0.09 2.84 5.90 -2.39 -0.01 2.83 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.40 4.76 -2.39 -0.01 2.39 16 36 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 37 H 0.00 0.29 7.42 -2.38 -0.02 0.27 16 38 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 39 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.19 -0.20 7.25 -2.38 -0.02 -0.22 16 41 H 0.14 1.13 7.86 -2.39 -0.02 1.11 16 42 H 0.42 -1.29 8.83 -92.71 -0.82 -2.11 16 43 H 0.41 2.24 8.93 -92.71 -0.83 1.41 16 Total: -1.00 -93.59 378.01 2.36 -91.23 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -0.56 Total: 4.43 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: 8.19 Total: 25.07 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -6.03 Total: -122.39 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.10 Total: -46.51 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.16 Total: 0.68 kcal Total: -93.59 2.36 -91.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649696244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.407 kcal (2) G-P(sol) polarization free energy of solvation -93.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds