Wall clock time and date at job start Sat Apr 11 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30212 * 126.78799 * 2 1 4 4 O 1.20920 * 111.65067 * 179.97438 * 3 2 1 5 5 C 1.34072 * 111.54955 * 359.75982 * 4 3 2 6 6 Cl 1.73594 * 126.79793 * 180.25529 * 5 4 3 7 7 C 1.35677 * 106.40286 * 0.38082 * 5 4 3 8 8 C 1.50697 * 128.01157 * 179.90591 * 7 5 4 9 9 C 1.50701 * 109.47492 * 269.68139 * 8 7 5 10 10 O 1.21279 * 119.99625 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00145 * 179.97438 * 9 8 7 12 12 C 1.46921 * 120.62857 * 354.34156 * 11 9 8 13 13 C 1.53200 * 108.77468 * 233.62300 * 12 11 9 14 14 C 1.53034 * 109.33972 * 305.35312 * 13 12 11 15 15 C 1.53112 * 109.50810 * 61.34274 * 14 13 12 16 16 C 1.46928 * 120.63218 * 174.35557 * 11 9 8 17 17 H 1.09002 * 109.58657 * 246.30776 * 16 11 9 18 18 C 1.53000 * 109.58281 * 6.58679 * 16 11 9 19 19 N 1.46497 * 109.47584 * 292.83965 * 18 16 11 20 20 C 1.36935 * 120.00506 * 185.82279 * 19 18 16 21 21 H 1.07998 * 119.99916 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00217 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00030 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00182 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47245 * 89.99714 * 24 22 20 26 26 H 1.48495 * 109.47375 * 209.99840 * 24 22 20 27 27 H 1.48499 * 109.47050 * 330.00089 * 24 22 20 28 28 H 1.08997 * 109.47287 * 270.02141 * 1 2 3 29 29 H 1.08999 * 109.47471 * 30.02891 * 1 2 3 30 30 H 1.09006 * 109.46576 * 150.02532 * 1 2 3 31 31 H 1.09002 * 109.47054 * 149.67909 * 8 7 5 32 32 H 1.09005 * 109.47302 * 29.68306 * 8 7 5 33 33 H 1.09000 * 109.59054 * 113.84425 * 12 11 9 34 34 H 1.08992 * 109.70699 * 353.48123 * 12 11 9 35 35 H 1.09002 * 109.49096 * 65.31579 * 13 12 11 36 36 H 1.08992 * 109.50113 * 185.38176 * 13 12 11 37 37 H 1.08997 * 109.46587 * 181.39918 * 14 13 12 38 38 H 1.09006 * 109.46163 * 301.35527 * 14 13 12 39 39 H 1.08998 * 109.49207 * 178.70214 * 15 14 13 40 40 H 1.09003 * 109.51061 * 58.62588 * 15 14 13 41 41 H 1.09000 * 109.47272 * 52.84255 * 18 16 11 42 42 H 1.09003 * 109.47172 * 172.84002 * 18 16 11 43 43 H 0.97006 * 119.99422 * 5.82388 * 19 18 16 44 44 H 0.96995 * 120.00292 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0428 0.0000 4 8 3.4540 0.7270 0.0005 5 6 3.6037 -0.6053 0.0061 6 17 5.1012 -1.4833 0.0150 7 6 2.3531 -1.1314 0.0007 8 6 1.9581 -2.5857 0.0016 9 6 1.8262 -3.0714 -1.4189 10 8 2.0331 -2.3115 -2.3412 11 7 1.4794 -4.3504 -1.6643 12 6 1.3472 -5.3146 -0.5635 13 6 2.2185 -6.5366 -0.8711 14 6 1.8404 -7.0958 -2.2445 15 6 2.0992 -6.0347 -3.3176 16 6 1.2265 -4.8072 -3.0377 17 1 0.1746 -5.0713 -3.1471 18 6 1.5802 -3.6911 -4.0226 19 7 0.6435 -2.5772 -3.8554 20 6 0.6886 -1.5101 -4.7124 21 1 1.4145 -1.4898 -5.5118 22 6 -0.1986 -0.4543 -4.5536 23 7 -1.0835 -0.4792 -3.5796 24 14 -0.1366 1.0017 -5.7221 25 1 -1.0334 0.7472 -6.8780 26 1 -0.5816 2.2267 -5.0106 27 1 1.2546 1.1885 -6.2068 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5135 31 1 1.0041 -2.7027 0.5157 32 1 2.7218 -3.1693 0.5157 33 1 0.3058 -5.6226 -0.4705 34 1 1.6772 -4.8558 0.3684 35 1 3.2683 -6.2432 -0.8743 36 1 2.0563 -7.2999 -0.1103 37 1 2.4419 -7.9802 -2.4548 38 1 0.7843 -7.3659 -2.2485 39 1 1.8515 -6.4412 -4.2982 40 1 3.1501 -5.7460 -3.2981 41 1 2.5954 -3.3443 -3.8295 42 1 1.5140 -4.0716 -5.0419 43 1 -0.0087 -2.5956 -3.1376 44 1 -1.7033 0.2586 -3.4684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661955105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:20 Heat of formation + Delta-G solvation = 55.098043 kcal Electronic energy + Delta-G solvation = -29653.626399 eV Core-core repulsion = 25636.670435 eV Total energy + Delta-G solvation = -4016.955964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.08394 -41.36481 -38.35100 -38.10534 -36.66069 -35.97090 -34.01368 -33.52280 -33.10111 -31.43339 -30.00189 -29.38621 -27.48711 -25.71290 -24.23523 -23.80821 -22.58536 -22.30619 -21.44815 -19.95519 -19.13505 -18.82980 -18.66989 -17.51493 -16.89927 -16.69705 -16.42738 -16.03919 -15.40015 -15.28435 -14.97980 -14.89797 -14.64421 -14.44377 -14.19354 -14.02445 -13.90829 -13.69210 -13.55090 -13.51575 -13.39198 -13.07400 -13.01096 -12.84324 -12.76738 -12.64770 -12.16611 -11.99384 -11.89723 -11.82325 -11.65607 -11.39731 -11.27843 -10.94120 -10.80798 -10.32477 -9.70538 -9.34706 -8.49663 -7.79927 -4.94497 -0.01829 0.23469 1.05708 1.39359 1.41751 1.47696 2.09027 2.29036 2.60658 2.61572 3.07430 3.52940 3.56946 3.75610 3.84575 3.91200 3.93400 4.06226 4.19664 4.24314 4.42512 4.44948 4.49634 4.56995 4.61811 4.67428 4.72986 4.77997 4.80281 4.87143 4.94482 5.06682 5.12212 5.21049 5.22992 5.26027 5.31700 5.40951 5.55380 5.60582 5.94273 6.41240 6.78223 7.06560 7.49244 7.70517 8.28620 8.53352 9.42858 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.007688 B = 0.006721 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.016946 B = 4164.935957 C = 6587.376982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.045 3.955 3 N -0.381 5.381 4 O 0.094 5.906 5 C 0.000 4.000 6 Cl 0.065 6.935 7 C -0.142 4.142 8 C -0.055 4.055 9 C 0.469 3.531 10 O -0.494 6.494 11 N -0.613 5.613 12 C 0.101 3.899 13 C -0.129 4.129 14 C -0.113 4.113 15 C -0.120 4.120 16 C 0.151 3.849 17 H 0.061 0.939 18 C 0.165 3.835 19 N -0.694 5.694 20 C -0.209 4.209 21 H 0.050 0.950 22 C -0.068 4.068 23 N -0.950 5.950 24 Si 0.945 3.055 25 H -0.286 1.286 26 H -0.301 1.301 27 H -0.289 1.289 28 H 0.111 0.889 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.017 0.983 42 H 0.006 0.994 43 H 0.371 0.629 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.985 -15.368 14.568 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.113 4.113 3 N -0.090 5.090 4 O 0.030 5.970 5 C -0.090 4.090 6 Cl 0.093 6.907 7 C -0.147 4.147 8 C -0.095 4.095 9 C 0.255 3.745 10 O -0.365 6.365 11 N -0.351 5.351 12 C -0.020 4.020 13 C -0.167 4.167 14 C -0.150 4.150 15 C -0.159 4.159 16 C 0.047 3.953 17 H 0.079 0.921 18 C 0.039 3.961 19 N -0.335 5.335 20 C -0.342 4.342 21 H 0.068 0.932 22 C -0.260 4.260 23 N -0.603 5.603 24 Si 0.777 3.223 25 H -0.214 1.214 26 H -0.228 1.228 27 H -0.215 1.215 28 H 0.129 0.871 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.024 0.976 43 H 0.203 0.797 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.121 -13.603 13.903 21.078 hybrid contribution -0.100 0.708 -0.954 1.192 sum 8.021 -12.895 12.949 19.958 Atomic orbital electron populations 1.20095 0.84361 1.03780 1.03589 1.23636 0.99876 0.88105 0.99722 1.73852 0.88993 1.24019 1.22143 1.84813 1.21977 1.21515 1.68724 1.24667 0.91610 0.84708 1.08057 1.98415 1.27086 1.68476 1.96689 1.20400 0.89510 0.97874 1.06925 1.20096 1.05977 0.87827 0.95583 1.20757 0.80300 0.82152 0.91278 1.91175 1.45088 1.55657 1.44549 1.47936 1.70637 1.09229 1.07307 1.21989 1.01016 0.89734 0.89286 1.21905 0.99666 0.97283 0.97804 1.21499 1.02261 0.97274 0.94012 1.21857 0.99183 0.94451 1.00365 1.21266 0.98665 0.93919 0.81451 0.92102 1.20859 0.93832 0.87043 0.94390 1.42218 1.38065 1.18626 1.34599 1.19288 1.11307 0.97706 1.05899 0.93171 1.25046 1.00067 1.00249 1.00661 1.69722 1.23552 1.32668 1.34354 0.85541 0.76844 0.80799 0.79083 1.21400 1.22763 1.21496 0.87094 0.92643 0.90406 0.85540 0.84944 0.90759 0.87845 0.91967 0.88144 0.90215 0.91355 0.90676 0.92367 0.96538 0.97594 0.79657 0.94851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.14 10.39 71.23 0.74 -1.40 16 2 C 0.04 1.69 7.32 43.55 0.32 2.01 16 3 N -0.38 -15.34 12.07 -49.42 -0.60 -15.93 16 4 O 0.09 3.49 11.20 71.33 0.80 4.28 16 5 C 0.00 -0.01 8.12 67.23 0.55 0.54 16 6 Cl 0.07 1.62 29.23 -2.72 -0.08 1.54 16 7 C -0.14 -4.66 4.82 -19.71 -0.10 -4.76 16 8 C -0.05 -1.40 4.51 29.10 0.13 -1.26 16 9 C 0.47 15.86 6.96 87.66 0.61 16.47 16 10 O -0.49 -22.88 9.70 -3.03 -0.03 -22.91 16 11 N -0.61 -16.78 2.97 -795.03 -2.36 -19.15 16 12 C 0.10 1.64 6.32 86.37 0.55 2.19 16 13 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 14 C -0.11 -1.72 5.89 30.64 0.18 -1.53 16 15 C -0.12 -2.71 5.37 30.70 0.16 -2.55 16 16 C 0.15 4.68 2.95 44.97 0.13 4.81 16 17 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 18 C 0.17 7.13 4.87 86.38 0.42 7.55 16 19 N -0.69 -36.75 3.15 -343.45 -1.08 -37.84 16 20 C -0.21 -12.57 9.69 84.03 0.81 -11.76 16 21 H 0.05 3.06 7.83 -2.91 -0.02 3.04 16 22 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 23 N -0.95 -58.50 13.06 21.65 0.28 -58.22 16 24 Si 0.94 50.44 29.55 68.60 2.03 52.47 16 25 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 26 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 27 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 28 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 31 H 0.13 2.61 8.12 -2.39 -0.02 2.59 16 32 H 0.13 2.36 7.46 -2.38 -0.02 2.34 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.18 5.97 -2.39 -0.01 1.17 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.00 8.14 -2.38 -0.02 0.99 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.02 0.80 6.49 -2.39 -0.02 0.79 16 42 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.37 20.53 6.82 -92.70 -0.63 19.90 16 44 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -77.65 369.76 4.52 -73.14 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.39 Total: 17.43 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.16 Total: 5.19 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -3.76 Total: -131.14 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.77 Total: -18.63 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.03 Total: 52.47 kcal Atomic # 17 Polarization: 1.62 SS G_CDS: -0.08 Total: 1.54 kcal Total: -77.65 4.52 -73.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661955105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.236 kcal (2) G-P(sol) polarization free energy of solvation -77.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds