Wall clock time and date at job start Sat Apr 11 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.46690 * 2 1 4 4 N 1.31240 * 124.05586 * 270.17117 * 3 2 1 5 5 N 1.27334 * 120.03264 * 180.34268 * 4 3 2 6 6 S 1.56636 * 109.74588 * 359.71353 * 5 4 3 7 7 C 1.38244 * 124.05320 * 90.00502 * 3 2 1 8 8 C 1.47176 * 128.47549 * 359.97438 * 7 3 2 9 9 O 1.21617 * 120.00168 * 359.70616 * 8 7 3 10 10 N 1.34774 * 119.99772 * 179.70501 * 8 7 3 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 H 1.08993 * 109.47322 * 64.99970 * 12 11 10 14 14 C 1.53001 * 109.46997 * 185.00271 * 12 11 10 15 15 N 1.46905 * 109.47150 * 304.99686 * 12 11 10 16 16 C 1.46899 * 110.99900 * 154.99998 * 15 12 11 17 17 C 1.50695 * 109.47055 * 180.02562 * 16 15 12 18 18 O 1.21298 * 120.00181 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00370 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00373 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99745 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99934 * 180.02562 * 20 19 17 23 23 N 1.31406 * 119.99825 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99691 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47147 * 60.00094 * 24 22 20 26 26 H 1.48497 * 109.46761 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46929 * 299.99945 * 24 22 20 28 28 H 1.08999 * 109.47331 * 60.00050 * 1 2 3 29 29 H 1.09006 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47203 * 299.99783 * 1 2 3 31 31 H 1.08995 * 109.47236 * 240.00600 * 2 1 3 32 32 H 1.08999 * 109.47331 * 119.99950 * 2 1 3 33 33 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 35 35 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 36 36 H 1.09002 * 109.46801 * 299.99817 * 14 12 11 37 37 H 1.08993 * 109.47331 * 59.99704 * 14 12 11 38 38 H 1.09000 * 109.46933 * 179.97438 * 14 12 11 39 39 H 1.00908 * 110.99452 * 31.04903 * 15 12 11 40 40 H 1.09002 * 109.47283 * 300.00108 * 16 15 12 41 41 H 1.08998 * 109.47032 * 60.00093 * 16 15 12 42 42 H 0.96999 * 119.99496 * 359.97438 * 19 17 16 43 43 H 0.97005 * 119.99793 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2741 2.1149 -1.0873 5 7 2.7039 3.3102 -0.9980 6 16 2.8494 3.7090 0.5097 7 6 2.2903 2.1508 1.1454 8 6 2.1427 1.7343 2.5492 9 8 1.7415 0.6169 2.8131 10 7 2.4521 2.5912 3.5424 11 6 2.3057 2.1765 4.9399 12 6 2.7198 3.3271 5.8594 13 1 2.0291 4.1605 5.7321 14 6 2.6864 2.8546 7.3142 15 7 4.0806 3.7621 5.5170 16 6 4.3008 5.1603 5.9101 17 6 5.7038 5.5702 5.5434 18 8 6.4470 4.7758 5.0068 19 7 6.1328 6.8194 5.8115 20 6 7.4091 7.1924 5.4774 21 1 8.0708 6.4851 4.9997 22 6 7.8515 8.4802 5.7543 23 7 7.0467 9.3403 6.3370 24 14 9.5906 8.9882 5.2997 25 1 9.7787 8.8519 3.8330 26 1 9.8134 10.4014 5.6976 27 1 10.5620 8.1153 6.0065 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7725 3.4823 3.3320 34 1 1.2659 1.9131 5.1337 35 1 2.9412 1.3116 5.1307 36 1 1.6768 2.5318 7.5683 37 1 3.3771 2.0211 7.4415 38 1 2.9819 3.6742 7.9693 39 1 4.2660 3.6293 4.5341 40 1 3.5880 5.8005 5.3903 41 1 4.1620 5.2613 6.9865 42 1 5.5383 7.4547 6.2402 43 1 7.3555 10.2394 6.5300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662273019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:24 Heat of formation + Delta-G solvation = -3.921486 kcal Electronic energy + Delta-G solvation = -26766.255439 eV Core-core repulsion = 22781.076654 eV Total energy + Delta-G solvation = -3985.178785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32604 -39.96899 -38.50411 -37.12720 -34.71910 -34.30489 -33.86945 -31.51312 -31.16380 -30.58314 -28.18524 -26.77203 -26.08291 -24.25702 -23.97067 -22.47715 -20.94006 -20.51386 -19.39283 -18.77360 -18.11364 -17.82147 -16.50352 -16.34161 -16.24486 -15.69827 -15.41237 -15.03920 -14.80333 -14.53336 -14.48144 -14.44560 -13.95356 -13.53387 -13.31088 -12.95117 -12.85198 -12.74609 -12.61755 -12.40167 -11.98855 -11.88600 -11.77477 -11.69870 -11.49474 -11.25377 -11.12218 -10.96868 -10.67710 -10.48652 -10.33959 -10.26976 -10.16175 -10.06650 -9.56131 -9.49417 -8.57032 -8.23672 -8.03071 -6.47727 -3.88783 -0.58224 0.50257 1.16721 1.62540 2.56844 2.63784 3.15988 3.22533 3.26590 3.54564 3.81834 3.93852 4.18230 4.20696 4.31335 4.51945 4.80118 4.86542 4.98374 5.01285 5.06281 5.15659 5.19296 5.37279 5.45964 5.56690 5.59809 5.62407 5.67909 5.78954 5.85568 5.87347 5.89052 5.97548 6.14934 6.25254 6.89784 7.03075 7.35068 7.43104 7.49463 7.64997 7.99309 8.54017 9.11506 9.46972 9.97907 10.69691 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002622 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.025362 B =10676.806295 C =12430.525681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.106 3.894 4 N -0.251 5.251 5 N -0.251 5.251 6 S 0.431 5.569 7 C -0.299 4.299 8 C 0.608 3.392 9 O -0.511 6.511 10 N -0.722 5.722 11 C 0.119 3.881 12 C 0.070 3.930 13 H 0.051 0.949 14 C -0.138 4.138 15 N -0.664 5.664 16 C 0.048 3.952 17 C 0.438 3.562 18 O -0.583 6.583 19 N -0.561 5.561 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.024 3.976 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.398 0.602 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.345 0.655 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.969 -12.228 -5.855 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.041 4.041 4 N -0.116 5.116 5 N -0.231 5.231 6 S 0.568 5.432 7 C -0.440 4.440 8 C 0.391 3.609 9 O -0.388 6.388 10 N -0.375 5.375 11 C -0.004 4.004 12 C -0.041 4.041 13 H 0.069 0.931 14 C -0.196 4.196 15 N -0.299 5.299 16 C -0.084 4.084 17 C 0.223 3.777 18 O -0.467 6.467 19 N -0.198 5.198 20 C -0.431 4.431 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.234 0.766 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.166 0.834 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.883 -12.058 -6.518 20.234 hybrid contribution -0.157 0.687 -0.104 0.712 sum -15.040 -11.372 -6.622 19.984 Atomic orbital electron populations 1.21662 0.93337 1.02710 1.02157 1.20314 0.96921 0.86418 1.05139 1.22983 0.96506 0.99637 0.85016 1.70630 1.14002 0.99044 1.27902 1.78890 1.17838 1.10654 1.15747 1.82845 1.45079 1.13879 1.01443 1.27750 1.15554 1.00792 0.99924 1.16339 0.77872 0.84786 0.81884 1.90813 1.45574 1.19304 1.83058 1.45934 1.67706 1.17015 1.06843 1.21740 1.02417 0.98379 0.77853 1.21845 0.90075 0.95907 0.96227 0.93112 1.21733 1.01448 1.02453 0.93980 1.60132 1.23559 1.20964 1.25246 1.21774 0.96474 0.88289 1.01887 1.19766 0.88813 0.83480 0.85651 1.90536 1.56975 1.51705 1.47518 1.41855 1.14021 1.10503 1.53375 1.19650 0.89363 0.96999 1.37041 0.87946 1.25262 0.99962 0.95676 0.96914 1.69598 1.36503 1.06172 1.41908 0.85922 0.81855 0.77406 0.79089 1.19884 1.20946 1.19842 0.92546 0.91225 0.92243 0.89375 0.87530 0.76639 0.90125 0.89618 0.92371 0.91396 0.91821 0.83366 0.93760 0.89244 0.77452 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.89 37.16 0.37 -0.75 16 2 C -0.05 -0.43 5.95 -27.88 -0.17 -0.59 16 3 C 0.11 1.18 6.25 -82.84 -0.52 0.67 16 4 N -0.25 -3.12 11.54 33.42 0.39 -2.74 16 5 N -0.25 -3.10 12.51 60.35 0.75 -2.35 16 6 S 0.43 4.32 23.05 -107.50 -2.48 1.84 16 7 C -0.30 -3.24 6.81 -35.95 -0.24 -3.48 16 8 C 0.61 6.82 7.80 -12.63 -0.10 6.72 16 9 O -0.51 -6.67 14.90 5.26 0.08 -6.59 16 10 N -0.72 -7.12 4.99 -61.46 -0.31 -7.43 16 11 C 0.12 1.13 5.31 -4.04 -0.02 1.11 16 12 C 0.07 0.70 2.81 -67.71 -0.19 0.51 16 13 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 14 C -0.14 -1.29 9.41 37.16 0.35 -0.94 16 15 N -0.66 -9.33 5.93 -108.00 -0.64 -9.97 16 16 C 0.05 0.76 5.96 -4.98 -0.03 0.73 16 17 C 0.44 9.67 7.82 -10.99 -0.09 9.58 16 18 O -0.58 -15.03 15.78 5.54 0.09 -14.94 16 19 N -0.56 -13.52 5.29 -10.96 -0.06 -13.58 16 20 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 21 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -23.78 13.05 55.50 0.72 -23.05 16 24 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.04 6.48 -51.93 -0.34 0.70 16 33 H 0.40 3.61 6.80 -40.82 -0.28 3.33 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 39 H 0.35 4.99 6.41 -39.29 -0.25 4.74 16 40 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 41 H 0.09 1.30 7.43 -51.93 -0.39 0.92 16 42 H 0.39 9.01 7.90 -40.82 -0.32 8.68 16 43 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -32.08 380.02 -7.30 -39.38 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.68 Total: 12.33 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.88 Total: 5.81 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.86 Total: -59.11 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.17 Total: -21.53 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -2.48 Total: 1.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.08 -7.30 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662273019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.458 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds