Wall clock time and date at job start Sat Apr 11 2020 06:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.46690 * 2 1 4 4 N 1.31240 * 124.05586 * 270.17117 * 3 2 1 5 5 N 1.27334 * 120.03264 * 180.34268 * 4 3 2 6 6 S 1.56636 * 109.74588 * 359.71353 * 5 4 3 7 7 C 1.38244 * 124.05320 * 90.00502 * 3 2 1 8 8 C 1.47176 * 128.47549 * 359.97438 * 7 3 2 9 9 O 1.21617 * 120.00168 * 359.70616 * 8 7 3 10 10 N 1.34774 * 119.99772 * 179.70501 * 8 7 3 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 H 1.08993 * 109.47322 * 64.99970 * 12 11 10 14 14 C 1.53001 * 109.46997 * 185.00271 * 12 11 10 15 15 N 1.46905 * 109.47150 * 304.99686 * 12 11 10 16 16 C 1.46899 * 110.99900 * 154.99998 * 15 12 11 17 17 C 1.50695 * 109.47055 * 180.02562 * 16 15 12 18 18 O 1.21298 * 120.00181 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00370 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00373 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99745 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99934 * 180.02562 * 20 19 17 23 23 N 1.31406 * 119.99825 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99691 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47147 * 60.00094 * 24 22 20 26 26 H 1.48497 * 109.46761 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46929 * 299.99945 * 24 22 20 28 28 H 1.08999 * 109.47331 * 60.00050 * 1 2 3 29 29 H 1.09006 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47203 * 299.99783 * 1 2 3 31 31 H 1.08995 * 109.47236 * 240.00600 * 2 1 3 32 32 H 1.08999 * 109.47331 * 119.99950 * 2 1 3 33 33 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 35 35 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 36 36 H 1.09002 * 109.46801 * 299.99817 * 14 12 11 37 37 H 1.08993 * 109.47331 * 59.99704 * 14 12 11 38 38 H 1.09000 * 109.46933 * 179.97438 * 14 12 11 39 39 H 1.00908 * 110.99452 * 31.04903 * 15 12 11 40 40 H 1.09002 * 109.47283 * 300.00108 * 16 15 12 41 41 H 1.08998 * 109.47032 * 60.00093 * 16 15 12 42 42 H 0.96999 * 119.99496 * 359.97438 * 19 17 16 43 43 H 0.97005 * 119.99793 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2741 2.1149 -1.0873 5 7 2.7039 3.3102 -0.9980 6 16 2.8494 3.7090 0.5097 7 6 2.2903 2.1508 1.1454 8 6 2.1427 1.7343 2.5492 9 8 1.7415 0.6169 2.8131 10 7 2.4521 2.5912 3.5424 11 6 2.3057 2.1765 4.9399 12 6 2.7198 3.3271 5.8594 13 1 2.0291 4.1605 5.7321 14 6 2.6864 2.8546 7.3142 15 7 4.0806 3.7621 5.5170 16 6 4.3008 5.1603 5.9101 17 6 5.7038 5.5702 5.5434 18 8 6.4470 4.7758 5.0068 19 7 6.1328 6.8194 5.8115 20 6 7.4091 7.1924 5.4774 21 1 8.0708 6.4851 4.9997 22 6 7.8515 8.4802 5.7543 23 7 7.0467 9.3403 6.3370 24 14 9.5906 8.9882 5.2997 25 1 9.7787 8.8519 3.8330 26 1 9.8134 10.4014 5.6976 27 1 10.5620 8.1153 6.0065 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7725 3.4823 3.3320 34 1 1.2659 1.9131 5.1337 35 1 2.9412 1.3116 5.1307 36 1 1.6768 2.5318 7.5683 37 1 3.3771 2.0211 7.4415 38 1 2.9819 3.6742 7.9693 39 1 4.2660 3.6293 4.5341 40 1 3.5880 5.8005 5.3903 41 1 4.1620 5.2613 6.9865 42 1 5.5383 7.4547 6.2402 43 1 7.3555 10.2394 6.5300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662273019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:23 Heat of formation + Delta-G solvation = -29.014211 kcal Electronic energy + Delta-G solvation = -26767.343541 eV Core-core repulsion = 22781.076654 eV Total energy + Delta-G solvation = -3986.266887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19347 -40.87247 -40.12038 -38.23981 -35.97814 -35.47624 -35.09719 -33.26662 -32.32607 -31.43353 -29.03541 -28.11974 -27.12940 -25.70554 -24.88922 -23.30471 -21.81047 -21.38223 -21.07531 -19.90874 -19.58649 -18.90322 -17.72869 -17.28272 -17.17553 -16.88160 -16.72009 -16.32602 -15.90849 -15.83999 -15.51632 -15.46897 -15.14778 -14.99396 -14.29104 -14.09999 -13.74079 -13.64561 -13.55399 -13.46663 -13.26375 -13.18026 -12.92378 -12.79259 -12.55926 -12.42401 -12.40684 -12.12437 -11.95964 -11.86435 -11.56538 -11.48357 -11.20368 -11.03222 -10.90196 -10.32814 -10.30393 -9.99441 -9.36223 -8.45346 -5.93287 -1.45182 -0.33024 0.30890 0.75291 1.40163 1.42881 1.52741 1.71607 1.79025 2.07893 2.29563 2.71799 2.87940 3.22742 3.37178 3.47254 3.52204 3.71282 4.04072 4.18696 4.27831 4.31112 4.33729 4.40296 4.48187 4.63140 4.64329 4.78128 4.82283 4.97457 4.99352 5.07675 5.09133 5.13663 5.30247 5.42661 5.48246 5.89177 6.07359 6.10895 6.35108 6.48747 6.62155 6.80017 7.14850 7.59175 8.14430 8.71567 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002622 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.025362 B =10676.806295 C =12430.525681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 C 0.101 3.899 4 N -0.269 5.269 5 N -0.280 5.280 6 S 0.476 5.524 7 C -0.308 4.308 8 C 0.609 3.391 9 O -0.531 6.531 10 N -0.716 5.716 11 C 0.123 3.877 12 C 0.075 3.925 13 H 0.072 0.928 14 C -0.137 4.137 15 N -0.681 5.681 16 C 0.063 3.937 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.572 5.572 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.988 3.012 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.403 0.597 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.341 0.659 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.397 0.603 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.133 -12.036 -5.342 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.047 4.047 4 N -0.133 5.133 5 N -0.261 5.261 6 S 0.613 5.387 7 C -0.449 4.449 8 C 0.393 3.607 9 O -0.409 6.409 10 N -0.368 5.368 11 C 0.000 4.000 12 C -0.034 4.034 13 H 0.090 0.910 14 C -0.195 4.195 15 N -0.316 5.316 16 C -0.069 4.069 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.210 5.210 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.812 3.188 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.239 0.761 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.161 0.839 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.231 0.769 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.072 -11.850 -5.993 20.849 hybrid contribution 0.185 0.584 -0.220 0.651 sum -15.888 -11.266 -6.213 20.444 Atomic orbital electron populations 1.21631 0.92397 1.03705 1.01582 1.20396 0.97661 0.85377 1.05347 1.23310 0.96191 1.00361 0.84834 1.70658 1.14730 0.99244 1.28675 1.78727 1.18841 1.11032 1.17459 1.82606 1.43510 1.12726 0.99869 1.27816 1.15835 1.01404 0.99873 1.16358 0.77651 0.84615 0.82095 1.90803 1.46655 1.20105 1.83340 1.45909 1.67070 1.17005 1.06863 1.21752 1.03175 0.97700 0.77349 1.21921 0.88265 0.96604 0.96647 0.90970 1.21745 1.02746 1.01789 0.93237 1.60125 1.26508 1.19918 1.25097 1.21640 0.92347 0.89797 1.03165 1.20911 0.90963 0.82179 0.83512 1.90509 1.58988 1.52617 1.48854 1.41920 1.13401 1.11518 1.54123 1.19593 0.90720 0.97331 1.38512 0.90392 1.25962 1.03336 0.95261 0.96520 1.69652 1.37772 1.06431 1.42108 0.85060 0.77597 0.77435 0.78713 1.19726 1.19624 1.19919 0.92549 0.89473 0.93277 0.88221 0.88162 0.76105 0.88308 0.90833 0.89777 0.92646 0.92344 0.83857 0.90691 0.87578 0.76909 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.05 -0.83 5.95 29.85 0.18 -0.65 16 3 C 0.10 2.21 6.25 42.65 0.27 2.48 16 4 N -0.27 -6.63 11.54 -48.18 -0.56 -7.19 16 5 N -0.28 -6.85 12.51 37.02 0.46 -6.39 16 6 S 0.48 9.17 23.05 -56.49 -1.30 7.87 16 7 C -0.31 -6.46 6.81 24.62 0.17 -6.29 16 8 C 0.61 13.04 7.80 86.59 0.68 13.71 16 9 O -0.53 -13.40 14.90 -4.08 -0.06 -13.46 16 10 N -0.72 -12.94 4.99 -466.62 -2.33 -15.26 16 11 C 0.12 2.07 5.31 86.38 0.46 2.53 16 12 C 0.07 1.31 2.81 44.91 0.13 1.43 16 13 H 0.07 1.02 7.80 -2.39 -0.02 1.00 16 14 C -0.14 -2.21 9.41 71.98 0.68 -1.54 16 15 N -0.68 -17.91 5.93 -495.59 -2.94 -20.85 16 16 C 0.06 1.83 5.96 85.56 0.51 2.34 16 17 C 0.44 19.17 7.82 87.66 0.69 19.85 16 18 O -0.62 -32.51 15.78 -3.08 -0.05 -32.56 16 19 N -0.57 -27.66 5.29 -306.98 -1.62 -29.28 16 20 C -0.33 -18.16 9.68 84.04 0.81 -17.34 16 21 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 22 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 23 N -0.92 -48.00 13.05 21.66 0.28 -47.72 16 24 Si 0.99 41.93 29.55 68.60 2.03 43.96 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.91 6.48 -2.39 -0.02 1.89 16 33 H 0.40 6.57 6.80 -92.71 -0.63 5.94 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.02 7.45 -2.39 -0.02 1.00 16 39 H 0.34 9.41 6.41 -89.69 -0.57 8.83 16 40 H 0.08 1.77 8.06 -2.39 -0.02 1.75 16 41 H 0.11 2.81 7.43 -2.39 -0.02 2.79 16 42 H 0.40 18.10 7.90 -92.71 -0.73 17.37 16 43 H 0.28 13.65 8.31 -92.70 -0.77 12.87 16 Total: -1.00 -69.55 380.02 -1.19 -70.74 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -0.85 Total: 35.00 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.74 Total: 15.13 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -6.70 Total: -126.69 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.11 Total: -46.02 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 9.17 SS G_CDS: -1.30 Total: 7.87 kcal Total: -69.55 -1.19 -70.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662273019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.726 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds