Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47259 * 2 1 4 4 N 1.31234 * 124.05466 * 89.97187 * 3 2 1 5 5 N 1.27336 * 120.03850 * 180.02562 * 4 3 2 6 6 S 1.56637 * 109.74129 * 0.02562 * 5 4 3 7 7 C 1.38241 * 124.05354 * 269.97592 * 3 2 1 8 8 C 1.47179 * 128.47808 * 359.97438 * 7 3 2 9 9 O 1.21614 * 119.99837 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99934 * 180.02562 * 8 7 3 11 11 C 1.46497 * 119.99666 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46902 * 179.97438 * 11 10 8 13 13 N 1.46905 * 109.47301 * 180.02562 * 12 11 10 14 14 C 1.46903 * 111.00048 * 66.04469 * 13 12 11 15 15 C 1.46897 * 111.00316 * 190.00148 * 13 12 11 16 16 C 1.50698 * 109.47282 * 169.99765 * 15 13 12 17 17 O 1.21288 * 120.00008 * 0.02562 * 16 15 13 18 18 N 1.34778 * 119.99857 * 179.97438 * 16 15 13 19 19 C 1.37098 * 119.99792 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00099 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00231 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99347 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47391 * 59.99933 * 23 21 19 25 25 H 1.48496 * 109.47339 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47306 * 299.99769 * 23 21 19 27 27 H 1.08991 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47298 * 300.00251 * 1 2 3 29 29 H 1.09013 * 109.47130 * 59.99875 * 1 2 3 30 30 H 1.08997 * 109.47298 * 239.99748 * 2 1 3 31 31 H 1.08998 * 109.47094 * 119.99606 * 2 1 3 32 32 H 0.97001 * 120.00005 * 359.97438 * 10 8 7 33 33 H 1.08993 * 109.47793 * 299.99917 * 11 10 8 34 34 H 1.09003 * 109.47026 * 60.00099 * 11 10 8 35 35 H 1.09001 * 109.47174 * 299.99963 * 12 11 10 36 36 H 1.08994 * 109.47731 * 60.00261 * 12 11 10 37 37 H 1.09001 * 109.46954 * 60.00226 * 14 13 12 38 38 H 1.09000 * 109.47078 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.47181 * 300.00381 * 14 13 12 40 40 H 1.09005 * 109.46919 * 289.99787 * 15 13 12 41 41 H 1.09001 * 109.46991 * 49.99490 * 15 13 12 42 42 H 0.96996 * 120.00005 * 0.02562 * 18 16 15 43 43 H 0.96999 * 119.99279 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2768 2.1139 1.0873 5 7 2.6999 3.3116 0.9981 6 16 2.8409 3.7120 -0.5096 7 6 2.2909 2.1505 -1.1453 8 6 2.1446 1.7336 -2.5493 9 8 1.7490 0.6143 -2.8131 10 7 2.4492 2.5923 -3.5424 11 6 2.3041 2.1771 -4.9398 12 6 2.7118 3.3300 -5.8593 13 7 2.5658 2.9139 -7.2606 14 6 1.1547 2.6813 -7.5964 15 6 3.1672 3.9002 -8.1681 16 6 3.2196 3.3329 -9.5632 17 8 2.7969 2.2169 -9.7803 18 7 3.7350 4.0659 -10.5699 19 6 3.7821 3.5500 -11.8392 20 1 3.4066 2.5560 -12.0323 21 6 4.3140 4.3055 -12.8770 22 7 4.7714 5.5148 -12.6418 23 14 4.3789 3.6023 -14.6062 24 1 3.0023 3.2841 -15.0632 25 1 4.9874 4.5991 -15.5235 26 1 5.1992 2.3644 -14.6068 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7644 3.4852 -3.3319 33 1 2.9438 1.3157 -5.1312 34 1 1.2655 1.9085 -5.1331 35 1 2.0717 4.1912 -5.6678 36 1 3.7502 3.5991 -5.6662 37 1 0.5887 3.6002 -7.4439 38 1 1.0753 2.3740 -8.6392 39 1 0.7532 1.8966 -6.9552 40 1 2.5651 4.8089 -8.1677 41 1 4.1777 4.1338 -7.8326 42 1 4.0726 4.9585 -10.3963 43 1 5.1431 6.0421 -13.3662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663221644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = 6.831120 kcal Electronic energy + Delta-G solvation = -26101.289630 eV Core-core repulsion = 22116.577113 eV Total energy + Delta-G solvation = -3984.712517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48022 -39.93953 -38.70280 -36.92013 -35.05914 -34.66101 -33.85957 -31.34189 -31.21956 -29.66998 -28.01888 -27.60766 -25.47147 -24.50451 -23.86652 -22.48926 -21.44402 -20.61794 -19.22620 -18.90346 -17.94721 -17.84687 -16.60969 -16.45438 -16.06019 -15.83383 -15.34266 -15.04915 -14.86935 -14.65182 -14.54329 -14.24809 -14.04843 -13.58650 -13.44329 -13.38416 -13.10946 -12.93266 -12.55438 -12.19234 -11.99931 -11.84384 -11.57552 -11.48775 -11.34893 -11.33114 -11.15517 -10.96284 -10.81764 -10.46246 -10.45889 -10.32625 -10.24130 -10.21651 -9.50796 -9.47334 -8.53981 -8.03650 -7.94595 -6.44715 -3.85546 -0.74957 0.31668 0.98416 1.47958 2.47295 2.53846 3.18135 3.24239 3.28494 3.39250 3.85914 3.94161 4.06253 4.19262 4.27043 4.66747 4.72222 4.86587 4.90763 4.93804 5.04945 5.20680 5.27970 5.37172 5.54614 5.56449 5.60482 5.67716 5.72787 5.75692 5.84674 5.87324 5.92041 5.96947 6.22644 6.49376 6.87110 7.12495 7.19146 7.23730 7.52445 7.60783 8.02856 8.58308 9.15049 9.50730 10.02417 10.72870 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.028462 B = 0.001702 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.543498 B =16442.780948 C =17165.398479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.107 3.893 4 N -0.248 5.248 5 N -0.251 5.251 6 S 0.413 5.587 7 C -0.291 4.291 8 C 0.602 3.398 9 O -0.506 6.506 10 N -0.719 5.719 11 C 0.122 3.878 12 C 0.042 3.958 13 N -0.514 5.514 14 C 0.017 3.983 15 C 0.047 3.953 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.398 0.602 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.016 0.984 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 -0.887 24.941 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.041 4.041 4 N -0.113 5.113 5 N -0.231 5.231 6 S 0.550 5.450 7 C -0.432 4.432 8 C 0.385 3.615 9 O -0.382 6.382 10 N -0.371 5.371 11 C -0.001 4.001 12 C -0.087 4.087 13 N -0.238 5.238 14 C -0.131 4.131 15 C -0.084 4.084 16 C 0.228 3.772 17 O -0.461 6.461 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.232 0.768 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.035 0.965 38 H 0.117 0.883 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.554 -1.202 25.499 25.930 hybrid contribution -0.291 0.526 -1.088 1.243 sum -4.845 -0.676 24.411 24.896 Atomic orbital electron populations 1.21669 0.93195 1.02912 1.02178 1.20344 0.97051 0.86289 1.05239 1.23016 0.96322 0.99759 0.84968 1.70622 1.13810 0.98949 1.27950 1.78921 1.18172 1.10578 1.15462 1.82557 1.46373 1.14274 1.01805 1.27782 1.15125 1.00247 1.00005 1.16358 0.78302 0.85011 0.81814 1.90850 1.45199 1.19256 1.82879 1.45806 1.67896 1.16596 1.06815 1.21467 1.03072 0.98398 0.77163 1.22263 1.01728 0.95288 0.89383 1.61439 1.17616 1.44830 0.99954 1.22643 0.86248 0.99082 1.05079 1.21872 1.00207 0.92973 0.93367 1.19684 0.84715 0.87244 0.85564 1.90494 1.51763 1.20092 1.83713 1.41853 1.54018 1.16728 1.07386 1.19650 1.38101 1.01846 0.83299 0.87925 1.25264 0.96830 0.95516 1.00323 1.69605 1.41097 1.09691 1.33931 0.85911 0.78704 0.78406 0.81167 1.19914 1.20997 1.19872 0.91072 0.92555 0.92169 0.87406 0.89332 0.76776 0.89522 0.90486 0.94369 0.90076 0.96550 0.88276 0.91821 0.93281 0.89269 0.77500 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.05 -0.39 5.95 -27.88 -0.17 -0.55 16 3 C 0.11 1.00 6.25 -82.84 -0.52 0.48 16 4 N -0.25 -2.57 11.54 33.42 0.39 -2.18 16 5 N -0.25 -2.42 12.51 60.35 0.75 -1.66 16 6 S 0.41 2.71 23.05 -107.50 -2.48 0.23 16 7 C -0.29 -2.51 6.81 -35.95 -0.24 -2.75 16 8 C 0.60 5.92 7.80 -12.63 -0.10 5.82 16 9 O -0.51 -6.44 14.89 5.27 0.08 -6.36 16 10 N -0.72 -5.81 5.55 -61.47 -0.34 -6.15 16 11 C 0.12 1.23 5.60 -4.04 -0.02 1.21 16 12 C 0.04 0.44 5.07 -3.82 -0.02 0.42 16 13 N -0.51 -7.73 4.50 -244.37 -1.10 -8.83 16 14 C 0.02 0.26 8.96 60.07 0.54 0.80 16 15 C 0.05 0.77 5.45 -4.98 -0.03 0.75 16 16 C 0.44 9.99 7.48 -10.99 -0.08 9.91 16 17 O -0.58 -14.99 13.91 5.55 0.08 -14.91 16 18 N -0.56 -13.79 5.29 -10.96 -0.06 -13.84 16 19 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 23 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.11 0.95 6.47 -51.93 -0.34 0.62 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.40 2.12 7.90 -40.82 -0.32 1.80 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.84 6.55 -51.93 -0.34 0.50 16 35 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 36 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 37 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 1.86 5.82 -51.93 -0.30 1.56 16 39 H 0.06 0.84 6.47 -51.93 -0.34 0.51 16 40 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 41 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 42 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -32.69 377.13 -7.48 -40.17 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.67 Total: 7.85 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.51 Total: 7.60 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.37 Total: -55.94 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.16 Total: -21.27 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.48 Total: 0.23 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.69 -7.48 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663221644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.002 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds