Wall clock time and date at job start Sat Apr 11 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31250 * 124.05197 * 2 1 4 4 N 1.27329 * 120.03381 * 180.33621 * 3 2 1 5 5 S 1.56632 * 109.74520 * 359.72301 * 4 3 2 6 6 C 1.38243 * 124.05985 * 179.83271 * 2 1 3 7 7 C 1.47171 * 128.47360 * 359.97438 * 6 2 1 8 8 O 1.21623 * 119.99863 * 359.70531 * 7 6 2 9 9 N 1.34769 * 120.00146 * 179.70042 * 7 6 2 10 10 C 1.46500 * 120.00237 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47314 * 55.00214 * 11 10 9 13 13 C 1.52996 * 109.47102 * 295.00080 * 11 10 9 14 14 C 1.52997 * 109.46646 * 175.00104 * 11 10 9 15 15 N 1.46910 * 109.46732 * 185.00048 * 14 11 10 16 16 C 1.46904 * 110.99860 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.47219 * 179.97438 * 16 15 14 18 18 O 1.21293 * 119.99771 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00202 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00329 * 180.02562 * 19 17 16 21 21 H 1.08010 * 119.99970 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00582 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99555 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00183 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46953 * 89.99845 * 24 22 20 26 26 H 1.48503 * 109.47219 * 209.99759 * 24 22 20 27 27 H 1.48500 * 109.47442 * 329.99860 * 24 22 20 28 28 H 1.09000 * 109.46965 * 270.16823 * 1 2 3 29 29 H 1.08994 * 109.47329 * 30.16739 * 1 2 3 30 30 H 1.08996 * 109.46656 * 150.17265 * 1 2 3 31 31 H 0.97010 * 119.99854 * 0.02562 * 9 7 6 32 32 H 1.08993 * 109.47452 * 60.00368 * 10 9 7 33 33 H 1.09000 * 109.47175 * 300.00158 * 10 9 7 34 34 H 1.08997 * 109.47474 * 60.00037 * 13 11 10 35 35 H 1.09002 * 109.46922 * 180.02562 * 13 11 10 36 36 H 1.09006 * 109.46822 * 299.99923 * 13 11 10 37 37 H 1.09007 * 109.47194 * 304.99526 * 14 11 10 38 38 H 1.08992 * 109.47477 * 65.00207 * 14 11 10 39 39 H 1.00892 * 110.99840 * 56.04653 * 15 14 11 40 40 H 1.09000 * 109.47171 * 300.00091 * 16 15 14 41 41 H 1.09004 * 109.46646 * 59.99788 * 16 15 14 42 42 H 0.97000 * 119.99939 * 359.97438 * 19 17 16 43 43 H 0.96994 * 119.99924 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5121 0.9982 -0.0065 5 16 3.9367 -0.5094 -0.0064 6 6 2.2812 -1.1453 0.0033 7 6 1.8395 -2.5491 0.0080 8 8 0.6523 -2.8130 0.0147 9 7 2.7505 -3.5422 0.0047 10 6 2.3108 -4.9397 0.0087 11 6 3.5338 -5.8592 0.0044 12 1 4.1823 -5.6052 0.8429 13 6 4.3018 -5.6802 -1.3067 14 6 3.0784 -7.3140 0.1343 15 7 4.2545 -8.1867 0.2505 16 6 3.8548 -9.5945 0.3779 17 6 5.0848 -10.4574 0.4940 18 8 6.1861 -9.9494 0.4732 19 7 4.9613 -11.7934 0.6209 20 6 6.0802 -12.5783 0.7271 21 1 7.0609 -12.1260 0.7085 22 6 5.9529 -13.9558 0.8585 23 7 4.7597 -14.5060 0.8816 24 14 7.4776 -15.0252 1.0024 25 1 7.8458 -15.1723 2.4335 26 1 7.1998 -16.3639 0.4226 27 1 8.5994 -14.3898 0.2655 28 1 -0.3633 0.0030 1.0277 29 1 -0.3634 0.8884 -0.5164 30 1 -0.3632 -0.8915 -0.5111 31 1 3.6975 -3.3317 -0.0004 32 1 1.7073 -5.1333 -0.8780 33 1 1.7161 -5.1309 0.9019 34 1 4.6262 -4.6438 -1.3993 35 1 5.1728 -6.3356 -1.3100 36 1 3.6532 -5.9343 -2.1452 37 1 2.4565 -7.4221 1.0230 38 1 2.5034 -7.5949 -0.7480 39 1 4.8383 -7.9055 1.0238 40 1 3.2385 -9.7181 1.2684 41 1 3.2849 -9.8914 -0.5025 42 1 4.0806 -12.1995 0.6380 43 1 4.6708 -15.4675 0.9729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666514387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:31 Heat of formation + Delta-G solvation = -8.639055 kcal Electronic energy + Delta-G solvation = -25654.778882 eV Core-core repulsion = 21669.395528 eV Total energy + Delta-G solvation = -3985.383354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48047 -40.07013 -38.42367 -37.34149 -35.10795 -33.91968 -33.78339 -32.54759 -31.22605 -29.26143 -27.49187 -27.44877 -26.69693 -24.92487 -23.47219 -22.47894 -21.14621 -20.47180 -19.24186 -19.01961 -18.04535 -17.81994 -16.66945 -16.55414 -15.99285 -15.91044 -15.42624 -15.10681 -14.78236 -14.62492 -14.38581 -14.28052 -13.75824 -13.57656 -13.50845 -13.48212 -13.27404 -12.91266 -12.72126 -12.46251 -12.05679 -12.01431 -11.73551 -11.54963 -11.23957 -11.18207 -11.03840 -10.99078 -10.86779 -10.53211 -10.41478 -10.38140 -10.24302 -10.23946 -9.60181 -9.53505 -8.50498 -8.10888 -7.98758 -6.44252 -3.85200 -0.79871 0.27847 0.93910 1.42355 2.44642 2.45787 3.15867 3.24837 3.30620 3.36690 3.87836 4.02397 4.02830 4.15272 4.23943 4.59006 4.68558 4.77994 4.84455 5.11457 5.12698 5.21509 5.22669 5.24380 5.34788 5.43923 5.59089 5.62999 5.67744 5.77154 5.80796 5.82164 5.94203 6.07036 6.23202 6.31026 6.80442 7.13447 7.13585 7.51659 7.52716 7.58824 8.03548 8.58360 9.15238 9.51584 10.02757 10.73420 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.033738 B = 0.001508 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.736039 B =18560.559351 C =19211.965626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.104 3.896 3 N -0.250 5.250 4 N -0.249 5.249 5 S 0.419 5.581 6 C -0.297 4.297 7 C 0.603 3.397 8 O -0.513 6.513 9 N -0.716 5.716 10 C 0.124 3.876 11 C -0.102 4.102 12 H 0.079 0.921 13 C -0.142 4.142 14 C 0.066 3.934 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.401 0.599 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.349 0.651 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.395 25.742 -1.702 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 N -0.117 5.117 4 N -0.230 5.230 5 S 0.555 5.445 6 C -0.438 4.438 7 C 0.386 3.614 8 O -0.389 6.389 9 N -0.369 5.369 10 C 0.001 3.999 11 C -0.121 4.121 12 H 0.097 0.903 13 C -0.200 4.200 14 C -0.064 4.064 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.236 0.764 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.168 0.832 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.823 26.743 -2.386 27.703 hybrid contribution -0.948 -1.367 1.036 1.960 sum -7.771 25.376 -1.350 26.573 Atomic orbital electron populations 1.20559 0.83620 1.05143 1.04522 1.23006 1.00314 0.84975 0.95971 1.70647 0.96881 1.27952 1.16194 1.78904 1.09475 1.15583 1.19053 1.82613 1.09590 1.01649 1.50654 1.27751 0.98252 0.99976 1.17798 1.16392 0.85944 0.81919 0.77145 1.90834 1.15720 1.83035 1.49320 1.45884 1.09432 1.06628 1.74911 1.21535 0.97061 0.78134 1.03162 1.21369 0.95941 0.94493 1.00266 0.90310 1.21785 1.01602 1.00835 0.95736 1.21888 0.92647 0.91012 1.00873 1.60045 1.17573 1.01065 1.51127 1.21667 0.96756 0.88746 1.01021 1.19798 0.90030 0.83135 0.84471 1.90519 1.27307 1.73259 1.55764 1.41864 1.09697 1.04760 1.63659 1.19706 0.88119 0.88157 1.47015 0.87912 1.25267 0.98104 0.97255 0.97297 1.69610 1.22100 1.12328 1.50212 0.85852 0.81111 0.78803 0.78486 1.20431 1.20913 1.19405 0.89160 0.89736 0.87960 0.76438 0.90473 0.90755 0.93790 0.90162 0.92594 0.95157 0.90608 0.83217 0.93840 0.89561 0.77451 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 9.89 36.01 0.36 -0.16 16 2 C 0.10 0.89 7.00 -82.84 -0.58 0.31 16 3 N -0.25 -2.47 11.54 33.42 0.39 -2.09 16 4 N -0.25 -2.32 12.51 60.35 0.75 -1.56 16 5 S 0.42 2.60 23.05 -107.50 -2.48 0.12 16 6 C -0.30 -2.34 6.81 -35.95 -0.24 -2.58 16 7 C 0.60 5.24 7.80 -12.64 -0.10 5.14 16 8 O -0.51 -5.82 14.90 5.26 0.08 -5.74 16 9 N -0.72 -4.92 5.28 -61.47 -0.32 -5.25 16 10 C 0.12 0.93 5.06 -4.04 -0.02 0.91 16 11 C -0.10 -0.81 2.57 -90.62 -0.23 -1.05 16 12 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 13 C -0.14 -1.22 8.95 37.16 0.33 -0.88 16 14 C 0.07 0.68 5.07 -3.82 -0.02 0.66 16 15 N -0.67 -9.55 5.58 -115.05 -0.64 -10.20 16 16 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 17 C 0.44 10.05 7.82 -10.99 -0.09 9.96 16 18 O -0.58 -15.36 15.78 5.55 0.09 -15.28 16 19 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 21 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 24 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.74 6.48 -51.93 -0.34 0.41 16 31 H 0.40 1.98 7.08 -40.82 -0.29 1.69 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.29 7.18 -51.93 -0.37 -0.08 16 35 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.35 5.17 8.43 -39.30 -0.33 4.84 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -33.02 381.87 -7.40 -40.42 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.79 Total: 10.37 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.86 Total: 5.22 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.84 Total: -56.60 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.17 Total: -21.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.48 Total: 0.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.02 -7.40 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666514387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.779 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds