Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31250 * 124.05197 * 2 1 4 4 N 1.27329 * 120.03381 * 180.33621 * 3 2 1 5 5 S 1.56632 * 109.74520 * 359.72301 * 4 3 2 6 6 C 1.38243 * 124.05985 * 179.83271 * 2 1 3 7 7 C 1.47171 * 128.47360 * 359.97438 * 6 2 1 8 8 O 1.21623 * 119.99863 * 359.70531 * 7 6 2 9 9 N 1.34769 * 120.00146 * 179.70042 * 7 6 2 10 10 C 1.46500 * 120.00237 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47314 * 55.00214 * 11 10 9 13 13 C 1.52996 * 109.47102 * 295.00080 * 11 10 9 14 14 C 1.52997 * 109.46646 * 175.00104 * 11 10 9 15 15 N 1.46910 * 109.46732 * 185.00048 * 14 11 10 16 16 C 1.46904 * 110.99860 * 179.97438 * 15 14 11 17 17 C 1.50696 * 109.47219 * 179.97438 * 16 15 14 18 18 O 1.21293 * 119.99771 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00202 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00329 * 180.02562 * 19 17 16 21 21 H 1.08010 * 119.99970 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00582 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99555 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00183 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46953 * 89.99845 * 24 22 20 26 26 H 1.48503 * 109.47219 * 209.99759 * 24 22 20 27 27 H 1.48500 * 109.47442 * 329.99860 * 24 22 20 28 28 H 1.09000 * 109.46965 * 270.16823 * 1 2 3 29 29 H 1.08994 * 109.47329 * 30.16739 * 1 2 3 30 30 H 1.08996 * 109.46656 * 150.17265 * 1 2 3 31 31 H 0.97010 * 119.99854 * 0.02562 * 9 7 6 32 32 H 1.08993 * 109.47452 * 60.00368 * 10 9 7 33 33 H 1.09000 * 109.47175 * 300.00158 * 10 9 7 34 34 H 1.08997 * 109.47474 * 60.00037 * 13 11 10 35 35 H 1.09002 * 109.46922 * 180.02562 * 13 11 10 36 36 H 1.09006 * 109.46822 * 299.99923 * 13 11 10 37 37 H 1.09007 * 109.47194 * 304.99526 * 14 11 10 38 38 H 1.08992 * 109.47477 * 65.00207 * 14 11 10 39 39 H 1.00892 * 110.99840 * 56.04653 * 15 14 11 40 40 H 1.09000 * 109.47171 * 300.00091 * 16 15 14 41 41 H 1.09004 * 109.46646 * 59.99788 * 16 15 14 42 42 H 0.97000 * 119.99939 * 359.97438 * 19 17 16 43 43 H 0.96994 * 119.99924 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5121 0.9982 -0.0065 5 16 3.9367 -0.5094 -0.0064 6 6 2.2812 -1.1453 0.0033 7 6 1.8395 -2.5491 0.0080 8 8 0.6523 -2.8130 0.0147 9 7 2.7505 -3.5422 0.0047 10 6 2.3108 -4.9397 0.0087 11 6 3.5338 -5.8592 0.0044 12 1 4.1823 -5.6052 0.8429 13 6 4.3018 -5.6802 -1.3067 14 6 3.0784 -7.3140 0.1343 15 7 4.2545 -8.1867 0.2505 16 6 3.8548 -9.5945 0.3779 17 6 5.0848 -10.4574 0.4940 18 8 6.1861 -9.9494 0.4732 19 7 4.9613 -11.7934 0.6209 20 6 6.0802 -12.5783 0.7271 21 1 7.0609 -12.1260 0.7085 22 6 5.9529 -13.9558 0.8585 23 7 4.7597 -14.5060 0.8816 24 14 7.4776 -15.0252 1.0024 25 1 7.8458 -15.1723 2.4335 26 1 7.1998 -16.3639 0.4226 27 1 8.5994 -14.3898 0.2655 28 1 -0.3633 0.0030 1.0277 29 1 -0.3634 0.8884 -0.5164 30 1 -0.3632 -0.8915 -0.5111 31 1 3.6975 -3.3317 -0.0004 32 1 1.7073 -5.1333 -0.8780 33 1 1.7161 -5.1309 0.9019 34 1 4.6262 -4.6438 -1.3993 35 1 5.1728 -6.3356 -1.3100 36 1 3.6532 -5.9343 -2.1452 37 1 2.4565 -7.4221 1.0230 38 1 2.5034 -7.5949 -0.7480 39 1 4.8383 -7.9055 1.0238 40 1 3.2385 -9.7181 1.2684 41 1 3.2849 -9.8914 -0.5025 42 1 4.0806 -12.1995 0.6380 43 1 4.6708 -15.4675 0.9729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666514387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = -34.863444 kcal Electronic energy + Delta-G solvation = -25655.916057 eV Core-core repulsion = 21669.395528 eV Total energy + Delta-G solvation = -3986.520529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.10136 -40.75024 -40.13111 -38.27750 -36.22336 -35.68811 -34.39071 -33.51675 -33.15390 -29.90081 -28.74912 -28.07484 -27.44300 -26.47808 -24.62051 -23.22009 -21.81787 -21.32634 -20.85425 -19.87994 -19.58687 -18.61989 -17.79786 -17.28630 -17.05618 -16.92952 -16.53254 -16.31118 -16.04753 -15.69907 -15.41634 -15.21292 -15.15601 -14.74519 -14.40185 -14.13490 -13.96639 -13.88774 -13.54233 -13.50144 -13.38679 -13.14702 -12.98252 -12.82810 -12.58348 -12.40400 -12.11845 -12.00199 -11.94029 -11.69380 -11.51847 -11.48811 -11.18511 -10.98983 -10.82006 -10.31921 -10.22185 -9.99813 -9.25842 -8.45432 -5.94022 -1.40726 -0.28247 0.35884 0.79006 1.39120 1.43103 1.55625 1.80406 1.81819 2.07773 2.30482 2.77924 2.97060 3.22281 3.44387 3.55272 3.58653 3.89538 3.99928 4.08706 4.22647 4.35745 4.51233 4.53069 4.61698 4.66211 4.66451 4.75141 4.79982 4.87703 4.98722 5.09607 5.11119 5.22235 5.38363 5.42326 5.57600 5.91100 6.12862 6.22331 6.46579 6.53448 6.61754 6.90204 7.14253 7.58563 8.13638 8.71895 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.033738 B = 0.001508 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.736039 B =18560.559351 C =19211.965626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.097 3.903 3 N -0.276 5.276 4 N -0.285 5.285 5 S 0.499 5.501 6 C -0.312 4.312 7 C 0.605 3.395 8 O -0.542 6.542 9 N -0.706 5.706 10 C 0.131 3.869 11 C -0.090 4.090 12 H 0.086 0.914 13 C -0.140 4.140 14 C 0.066 3.934 15 N -0.678 5.678 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.273 1.273 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.411 0.589 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.345 0.655 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.396 0.604 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 26.004 -1.573 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 N -0.141 5.141 4 N -0.266 5.266 5 S 0.635 5.365 6 C -0.453 4.453 7 C 0.389 3.611 8 O -0.421 6.421 9 N -0.359 5.359 10 C 0.008 3.992 11 C -0.109 4.109 12 H 0.105 0.895 13 C -0.198 4.198 14 C -0.063 4.063 15 N -0.310 5.310 16 C -0.067 4.067 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.198 1.198 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.248 0.752 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.163 0.837 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.950 27.024 -2.260 27.995 hybrid contribution -0.856 -1.427 0.981 1.932 sum -7.805 25.597 -1.279 26.791 Atomic orbital electron populations 1.20585 0.82774 1.05250 1.05034 1.23282 1.01096 0.84996 0.95769 1.70695 0.97151 1.28804 1.17447 1.78655 1.09614 1.18022 1.20261 1.82247 1.07275 0.99161 1.47855 1.27758 0.99649 0.99543 1.18305 1.16444 0.85661 0.82303 0.76688 1.90822 1.16953 1.83498 1.50797 1.45779 1.09825 1.06170 1.74077 1.21417 0.96547 0.78076 1.03177 1.21240 0.96162 0.93263 1.00276 0.89545 1.21749 1.00514 1.01550 0.95950 1.21976 0.91331 0.91370 1.01663 1.60038 1.19465 1.00381 1.51117 1.21520 0.93565 0.88886 1.02771 1.20922 0.91601 0.82914 0.82033 1.90487 1.29645 1.73903 1.56862 1.41945 1.09178 1.05554 1.64507 1.19674 0.88203 0.89275 1.49226 0.90272 1.26028 1.01040 0.97835 0.96371 1.69670 1.23476 1.12882 1.50106 0.84932 0.77517 0.77259 0.78658 1.19646 1.19662 1.19789 0.88429 0.88674 0.88693 0.75199 0.90640 0.90680 0.91693 0.92793 0.92807 0.93814 0.90174 0.83678 0.91596 0.87920 0.76997 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.89 71.24 0.70 -0.27 16 2 C 0.10 1.58 7.00 42.65 0.30 1.88 16 3 N -0.28 -5.30 11.54 -48.18 -0.56 -5.85 16 4 N -0.28 -5.01 12.51 37.02 0.46 -4.55 16 5 S 0.50 5.23 23.05 -56.49 -1.30 3.93 16 6 C -0.31 -4.48 6.81 24.62 0.17 -4.31 16 7 C 0.61 9.60 7.80 86.59 0.68 10.28 16 8 O -0.54 -11.78 14.90 -4.10 -0.06 -11.84 16 9 N -0.71 -8.12 5.28 -466.63 -2.46 -10.58 16 10 C 0.13 1.66 5.06 86.38 0.44 2.09 16 11 C -0.09 -1.24 2.57 -10.79 -0.03 -1.27 16 12 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 13 C -0.14 -2.15 8.95 71.98 0.64 -1.50 16 14 C 0.07 1.20 5.07 86.30 0.44 1.64 16 15 N -0.68 -18.50 5.58 -517.91 -2.89 -21.38 16 16 C 0.07 2.06 6.17 85.55 0.53 2.58 16 17 C 0.44 20.04 7.82 87.66 0.69 20.72 16 18 O -0.62 -33.30 15.78 -3.07 -0.05 -33.35 16 19 N -0.57 -28.81 5.29 -306.99 -1.62 -30.44 16 20 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 24 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.36 6.48 -2.39 -0.02 1.34 16 31 H 0.41 2.91 7.08 -92.70 -0.66 2.25 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 0.70 7.18 -2.39 -0.02 0.68 16 35 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 36 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.34 9.87 8.43 -89.70 -0.76 9.11 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 43 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -72.02 381.87 -1.40 -73.42 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -1.06 Total: 31.31 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.83 Total: 13.74 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -6.79 Total: -121.56 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -0.11 Total: -45.19 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.30 Total: 3.93 kcal Total: -72.02 -1.40 -73.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666514387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.552 kcal (2) G-P(sol) polarization free energy of solvation -72.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds