Wall clock time and date at job start Sat Apr 11 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31242 * 124.05457 * 2 1 4 4 N 1.27332 * 120.03754 * 180.37291 * 3 2 1 5 5 S 1.56631 * 109.74087 * 359.68581 * 4 3 2 6 6 C 1.38244 * 124.05713 * 179.81762 * 2 1 3 7 7 C 1.47170 * 128.47338 * 359.97325 * 6 2 1 8 8 O 1.21617 * 120.00238 * 359.70180 * 7 6 2 9 9 N 1.34781 * 119.99722 * 179.70471 * 7 6 2 10 10 C 1.46497 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47162 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47076 * 304.99867 * 11 10 9 13 13 C 1.53004 * 109.47412 * 64.99947 * 11 10 9 14 14 C 1.53006 * 109.47268 * 185.00067 * 11 10 9 15 15 N 1.46898 * 109.47138 * 174.99901 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46922 * 90.00327 * 24 22 20 26 26 H 1.48500 * 109.47032 * 210.00074 * 24 22 20 27 27 H 1.48489 * 109.47076 * 330.00276 * 24 22 20 28 28 H 1.09000 * 109.46650 * 270.18518 * 1 2 3 29 29 H 1.08998 * 109.47084 * 30.18259 * 1 2 3 30 30 H 1.08999 * 109.46522 * 150.18562 * 1 2 3 31 31 H 0.96998 * 120.00074 * 0.02562 * 9 7 6 32 32 H 1.09005 * 109.46785 * 59.99797 * 10 9 7 33 33 H 1.09001 * 109.46833 * 299.99849 * 10 9 7 34 34 H 1.09001 * 109.47106 * 179.97438 * 13 11 10 35 35 H 1.09000 * 109.46646 * 300.00184 * 13 11 10 36 36 H 1.08997 * 109.46495 * 60.00353 * 13 11 10 37 37 H 1.08997 * 109.46770 * 54.99847 * 14 11 10 38 38 H 1.08995 * 109.47019 * 295.00060 * 14 11 10 39 39 H 1.00901 * 111.00121 * 56.04666 * 15 14 11 40 40 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 41 41 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 42 42 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 43 43 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9982 -0.0072 5 16 3.9367 -0.5095 -0.0069 6 6 2.2813 -1.1453 0.0036 7 6 1.8395 -2.5491 0.0087 8 8 0.6523 -2.8130 0.0155 9 7 2.7506 -3.5423 0.0057 10 6 2.3109 -4.9397 0.0113 11 6 3.5337 -5.8592 0.0070 12 1 4.1740 -5.6084 -0.8387 13 6 4.3146 -5.6754 1.3099 14 6 3.0772 -7.3146 -0.1129 15 7 4.2520 -8.1876 -0.2374 16 6 3.8511 -9.5960 -0.3556 17 6 5.0799 -10.4592 -0.4818 18 8 6.1813 -9.9511 -0.4735 19 7 4.9550 -11.7956 -0.6038 20 6 6.0730 -12.5809 -0.7180 21 1 7.0537 -12.1286 -0.7107 22 6 5.9443 -13.9587 -0.8432 23 7 4.7510 -14.5091 -0.8517 24 14 7.4675 -15.0287 -0.9996 25 1 7.9218 -15.4436 0.3519 26 1 7.1452 -16.2339 -1.8051 27 1 8.5462 -14.2593 -1.6699 28 1 -0.3633 0.0033 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3632 -0.8917 -0.5110 31 1 3.6975 -3.3319 0.0007 32 1 1.7067 -5.1340 -0.8749 33 1 1.7167 -5.1301 0.9051 34 1 5.1856 -6.3308 1.3070 35 1 4.6398 -4.6385 1.3953 36 1 3.6743 -5.9263 2.1556 37 1 2.4466 -7.4260 -0.9950 38 1 2.5108 -7.5921 0.7760 39 1 4.8847 -8.0552 0.5374 40 1 3.2898 -9.8897 0.5315 41 1 3.2261 -9.7229 -1.2396 42 1 4.0742 -12.2018 -0.6100 43 1 4.6611 -15.4710 -0.9395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666514396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:33 Heat of formation + Delta-G solvation = -8.291289 kcal Electronic energy + Delta-G solvation = -25659.686232 eV Core-core repulsion = 21674.317959 eV Total energy + Delta-G solvation = -3985.368274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48010 -40.07549 -38.44690 -37.38841 -35.11634 -33.92221 -33.78247 -32.52227 -31.22311 -29.27195 -27.48933 -27.47247 -26.82368 -24.94668 -23.51786 -22.47717 -21.11764 -20.34406 -19.27600 -19.01931 -18.04043 -17.83524 -16.75045 -16.62830 -16.05662 -15.82668 -15.51990 -15.12582 -14.70766 -14.57905 -14.42065 -14.29228 -13.78826 -13.57190 -13.53666 -13.46525 -13.08214 -12.94919 -12.87373 -12.72492 -12.12860 -12.05140 -11.64135 -11.57772 -11.31586 -11.13172 -11.06706 -10.99147 -10.87084 -10.53553 -10.41439 -10.38036 -10.24234 -10.23923 -9.60367 -9.53525 -8.50613 -8.11707 -7.98758 -6.44157 -3.85148 -0.79804 0.27924 0.94003 1.42470 2.44716 2.45763 3.15933 3.24901 3.30737 3.36769 3.87790 4.02718 4.03158 4.15163 4.24310 4.58940 4.63918 4.76090 4.80085 5.08155 5.12741 5.21709 5.24082 5.24343 5.30852 5.39240 5.50213 5.60897 5.63997 5.73109 5.75226 5.83873 5.94367 5.99741 6.07394 6.23508 6.80401 7.13619 7.14153 7.51671 7.52815 7.59770 8.03623 8.58428 9.15255 9.51579 10.02744 10.73475 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.001508 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.677101 B =18560.899504 C =19211.413520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.105 3.895 3 N -0.251 5.251 4 N -0.249 5.249 5 S 0.419 5.581 6 C -0.297 4.297 7 C 0.603 3.397 8 O -0.513 6.513 9 N -0.717 5.717 10 C 0.125 3.875 11 C -0.103 4.103 12 H 0.091 0.909 13 C -0.155 4.155 14 C 0.066 3.934 15 N -0.668 5.668 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.400 0.600 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.349 0.651 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.392 0.608 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 25.670 3.350 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 N -0.117 5.117 4 N -0.230 5.230 5 S 0.555 5.445 6 C -0.438 4.438 7 C 0.386 3.614 8 O -0.389 6.389 9 N -0.369 5.369 10 C 0.002 3.998 11 C -0.123 4.123 12 H 0.109 0.891 13 C -0.212 4.212 14 C -0.064 4.064 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.236 0.764 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.170 0.830 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.226 0.774 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.838 26.801 2.655 27.787 hybrid contribution -0.871 -1.541 0.825 1.953 sum -7.709 25.260 3.481 26.639 Atomic orbital electron populations 1.20562 0.83617 1.05156 1.04508 1.23005 1.00315 0.84974 0.95969 1.70644 0.96882 1.27959 1.16195 1.78906 1.09473 1.15579 1.19056 1.82611 1.09589 1.01657 1.50645 1.27752 0.98252 0.99977 1.17802 1.16391 0.85941 0.81916 0.77139 1.90833 1.15720 1.83030 1.49302 1.45885 1.09427 1.06632 1.74938 1.21515 0.96990 0.78096 1.03201 1.21393 0.96152 0.94710 1.00005 0.89057 1.21928 1.00931 1.01766 0.96573 1.21869 0.92896 0.90963 1.00660 1.60083 1.14824 1.04298 1.50987 1.21674 0.96978 0.88315 1.01274 1.19801 0.90013 0.83044 0.84598 1.90517 1.27290 1.73203 1.55857 1.41864 1.09738 1.04691 1.63667 1.19706 0.88166 0.88097 1.47033 0.87906 1.25268 0.98099 0.97259 0.97292 1.69614 1.22076 1.12290 1.50266 0.85851 0.81060 0.79037 0.78301 1.20427 1.20911 1.19405 0.89170 0.89734 0.87952 0.76449 0.90472 0.90675 0.91156 0.92829 0.92464 0.90647 0.95061 0.83030 0.93818 0.89527 0.77440 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 9.89 36.01 0.36 -0.16 16 2 C 0.10 0.89 7.00 -82.84 -0.58 0.31 16 3 N -0.25 -2.47 11.54 33.42 0.39 -2.08 16 4 N -0.25 -2.32 12.51 60.35 0.75 -1.56 16 5 S 0.42 2.59 23.05 -107.50 -2.48 0.11 16 6 C -0.30 -2.33 6.81 -35.95 -0.24 -2.57 16 7 C 0.60 5.22 7.80 -12.63 -0.10 5.12 16 8 O -0.51 -5.80 14.90 5.26 0.08 -5.72 16 9 N -0.72 -4.89 5.28 -61.47 -0.32 -5.21 16 10 C 0.13 0.93 5.06 -4.05 -0.02 0.91 16 11 C -0.10 -0.83 2.63 -90.62 -0.24 -1.07 16 12 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.15 -1.18 8.84 37.16 0.33 -0.85 16 14 C 0.07 0.69 5.14 -3.82 -0.02 0.67 16 15 N -0.67 -9.81 6.12 -115.05 -0.70 -10.51 16 16 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 17 C 0.44 10.11 7.82 -10.99 -0.09 10.03 16 18 O -0.58 -15.47 15.78 5.55 0.09 -15.38 16 19 N -0.56 -14.01 5.29 -10.97 -0.06 -14.07 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 24 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.74 6.48 -51.93 -0.34 0.41 16 31 H 0.40 1.95 7.08 -40.82 -0.29 1.66 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.64 6.68 -51.93 -0.35 0.30 16 35 H 0.05 0.32 7.18 -51.93 -0.37 -0.06 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.35 5.26 6.68 -39.29 -0.26 5.00 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -33.29 379.61 -7.38 -40.67 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.67 Total: 10.51 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.87 Total: 5.28 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.78 Total: -56.93 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.17 Total: -21.10 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.48 Total: 0.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.29 -7.38 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666514396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.374 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds